HEADER OXIDOREDUCTASE 03-MAR-11 3QY9 TITLE THE CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE REDUCTASE FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE REDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DHPR; COMPND 5 EC: 1.3.1.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: DAPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ROSSMANN FOLD, REDUCTASE, NADH, NADPH, DIHYDRODIPICOLINATE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.S.GIRISH,B.GOPAL REVDAT 3 01-NOV-23 3QY9 1 REMARK SEQADV REVDAT 2 28-SEP-11 3QY9 1 JRNL REVDAT 1 03-AUG-11 3QY9 0 JRNL AUTH T.S.GIRISH,V.NAVRATNA,B.GOPAL JRNL TITL STRUCTURE AND NUCLEOTIDE SPECIFICITY OF STAPHYLOCOCCUS JRNL TITL 2 AUREUS DIHYDRODIPICOLINATE REDUCTASE (DAPB) JRNL REF FEBS LETT. V. 585 2561 2011 JRNL REFN ISSN 0014-5793 JRNL PMID 21803042 JRNL DOI 10.1016/J.FEBSLET.2011.07.021 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 109818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5791 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7515 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 429 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7495 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 711 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.31000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.435 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7769 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10571 ; 1.046 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 969 ; 5.509 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 368 ;32.251 ;25.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1293 ;13.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.810 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1199 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5863 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4816 ; 0.388 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7771 ; 0.738 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2953 ; 1.257 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2794 ; 2.076 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8080 31.4920 0.9080 REMARK 3 T TENSOR REMARK 3 T11: 0.7471 T22: 0.0901 REMARK 3 T33: 0.2622 T12: 0.0728 REMARK 3 T13: 0.1232 T23: 0.0613 REMARK 3 L TENSOR REMARK 3 L11: 3.5789 L22: 6.1007 REMARK 3 L33: 8.6835 L12: 1.0462 REMARK 3 L13: 0.9882 L23: -3.0460 REMARK 3 S TENSOR REMARK 3 S11: -0.0925 S12: 0.0638 S13: 0.6426 REMARK 3 S21: 0.8830 S22: 0.3515 S23: 0.5381 REMARK 3 S31: -2.2065 S32: -0.3773 S33: -0.2590 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): -32.8910 23.1770 -9.4660 REMARK 3 T TENSOR REMARK 3 T11: 0.3866 T22: 0.5846 REMARK 3 T33: 0.5968 T12: -0.0396 REMARK 3 T13: -0.1079 T23: 0.3895 REMARK 3 L TENSOR REMARK 3 L11: 1.5894 L22: 7.2874 REMARK 3 L33: 8.2353 L12: -3.0430 REMARK 3 L13: 1.0126 L23: -2.6754 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: -0.0205 S13: -0.2211 REMARK 3 S21: -0.2751 S22: 0.6477 S23: 1.2359 REMARK 3 S31: -0.8843 S32: -1.3009 S33: -0.5623 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): -32.8480 -1.4890 7.9220 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.0870 REMARK 3 T33: 0.0341 T12: 0.0307 REMARK 3 T13: -0.0220 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 1.0686 L22: 1.2441 REMARK 3 L33: 1.1729 L12: 0.3758 REMARK 3 L13: -0.0788 L23: 0.0788 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.1596 S13: 0.0425 REMARK 3 S21: -0.1617 S22: -0.0216 S23: 0.0954 REMARK 3 S31: -0.0943 S32: -0.1511 S33: 0.0490 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0770 16.8280 -4.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.1486 REMARK 3 T33: 0.0908 T12: -0.0669 REMARK 3 T13: 0.0177 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.8213 L22: 2.6972 REMARK 3 L33: 7.5454 L12: 0.1539 REMARK 3 L13: 0.8910 L23: -3.0647 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: 0.3064 S13: 0.0752 REMARK 3 S21: -0.2072 S22: 0.2418 S23: 0.0086 REMARK 3 S31: -0.0923 S32: 0.2755 S33: -0.2136 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9570 -38.0410 0.8760 REMARK 3 T TENSOR REMARK 3 T11: 0.0458 T22: 0.0669 REMARK 3 T33: 0.1273 T12: 0.0114 REMARK 3 T13: 0.0346 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 3.1526 L22: 3.1355 REMARK 3 L33: 2.9497 L12: -1.8633 REMARK 3 L13: -1.8786 L23: 1.7307 REMARK 3 S TENSOR REMARK 3 S11: -0.1954 S12: 0.0408 S13: -0.5064 REMARK 3 S21: 0.2803 S22: -0.0684 S23: 0.3280 REMARK 3 S31: 0.2664 S32: -0.0529 S33: 0.2638 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8290 -28.7070 -10.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.2336 REMARK 3 T33: 0.1255 T12: 0.0540 REMARK 3 T13: 0.0198 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 3.3843 L22: 4.8573 REMARK 3 L33: 2.5240 L12: -1.8671 REMARK 3 L13: -1.6510 L23: 2.1374 REMARK 3 S TENSOR REMARK 3 S11: 0.3192 S12: 0.3180 S13: 0.0518 REMARK 3 S21: -0.6658 S22: -0.2030 S23: -0.3901 REMARK 3 S31: -0.5138 S32: 0.0448 S33: -0.1161 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5190 -6.2940 7.1570 REMARK 3 T TENSOR REMARK 3 T11: 0.0528 T22: 0.1053 REMARK 3 T33: 0.0295 T12: 0.0119 REMARK 3 T13: 0.0266 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.9936 L22: 1.5771 REMARK 3 L33: 1.2583 L12: -0.1877 REMARK 3 L13: 0.3904 L23: -0.0490 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.1527 S13: 0.0199 REMARK 3 S21: -0.1633 S22: -0.0372 S23: -0.1537 REMARK 3 S31: -0.0459 S32: 0.2801 S33: 0.0184 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 211 B 240 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3020 -25.5820 -4.0010 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.1109 REMARK 3 T33: 0.1039 T12: 0.0684 REMARK 3 T13: -0.0135 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.7123 L22: 0.9038 REMARK 3 L33: 4.5876 L12: 0.7243 REMARK 3 L13: 0.3898 L23: 0.1452 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: 0.0621 S13: 0.0975 REMARK 3 S21: -0.1347 S22: -0.0315 S23: 0.1728 REMARK 3 S31: -0.1798 S32: -0.2713 S33: 0.0993 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 69 REMARK 3 ORIGIN FOR THE GROUP (A): -31.6300 -37.9800 31.5820 REMARK 3 T TENSOR REMARK 3 T11: 0.0587 T22: 0.0576 REMARK 3 T33: 0.1781 T12: -0.0412 REMARK 3 T13: 0.0093 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.0842 L22: 4.3013 REMARK 3 L33: 3.7722 L12: 2.3010 REMARK 3 L13: -2.0325 L23: -2.1283 REMARK 3 S TENSOR REMARK 3 S11: -0.1085 S12: -0.0345 S13: -0.5511 REMARK 3 S21: -0.2152 S22: -0.1358 S23: -0.4621 REMARK 3 S31: 0.2437 S32: -0.0886 S33: 0.2443 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 70 C 104 REMARK 3 ORIGIN FOR THE GROUP (A): -36.4310 -29.1780 42.8000 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.2015 REMARK 3 T33: 0.0903 T12: -0.1222 REMARK 3 T13: 0.0496 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 4.1851 L22: 7.5986 REMARK 3 L33: 3.6155 L12: 3.9532 REMARK 3 L13: -2.0146 L23: -2.2430 REMARK 3 S TENSOR REMARK 3 S11: 0.5896 S12: -0.4047 S13: 0.1827 REMARK 3 S21: 0.8576 S22: -0.5002 S23: 0.5329 REMARK 3 S31: -0.6501 S32: -0.1138 S33: -0.0894 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 105 C 210 REMARK 3 ORIGIN FOR THE GROUP (A): -32.4440 -3.4060 26.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0695 REMARK 3 T33: 0.0298 T12: -0.0118 REMARK 3 T13: 0.0174 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.0284 L22: 1.1610 REMARK 3 L33: 1.0855 L12: -0.0796 REMARK 3 L13: 0.2065 L23: 0.1893 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.1083 S13: 0.0020 REMARK 3 S21: 0.1541 S22: -0.0926 S23: 0.1176 REMARK 3 S31: -0.0605 S32: -0.1808 S33: 0.0647 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 211 C 240 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8190 -25.1230 37.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.1632 REMARK 3 T33: 0.1125 T12: -0.1444 REMARK 3 T13: -0.0648 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 2.5033 L22: 4.0516 REMARK 3 L33: 5.3740 L12: 1.5051 REMARK 3 L13: -0.6566 L23: -2.8112 REMARK 3 S TENSOR REMARK 3 S11: 0.3970 S12: -0.5381 S13: -0.3055 REMARK 3 S21: 0.5843 S22: -0.5336 S23: -0.4754 REMARK 3 S31: -0.3327 S32: 0.4370 S33: 0.1366 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 69 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7370 29.9410 33.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.0974 T22: 0.0573 REMARK 3 T33: 0.0706 T12: -0.0117 REMARK 3 T13: -0.0314 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.0174 L22: 2.7745 REMARK 3 L33: 2.6686 L12: 0.7301 REMARK 3 L13: 0.5738 L23: 1.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.1173 S12: 0.1123 S13: 0.1983 REMARK 3 S21: -0.4493 S22: -0.0012 S23: 0.0962 REMARK 3 S31: -0.3771 S32: -0.0458 S33: 0.1185 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 70 D 104 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3300 21.0100 43.4900 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.1241 REMARK 3 T33: 0.0917 T12: 0.0167 REMARK 3 T13: -0.0263 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.4567 L22: 3.1509 REMARK 3 L33: 3.4988 L12: 0.7496 REMARK 3 L13: 0.6692 L23: 0.3623 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: 0.0765 S13: -0.0833 REMARK 3 S21: 0.1928 S22: 0.0124 S23: -0.4203 REMARK 3 S31: 0.2691 S32: 0.4410 S33: -0.0728 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 105 D 210 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8850 -4.5100 26.1340 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.0762 REMARK 3 T33: 0.0231 T12: -0.0128 REMARK 3 T13: -0.0223 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.7531 L22: 1.2187 REMARK 3 L33: 0.9805 L12: -0.1150 REMARK 3 L13: -0.1282 L23: 0.1281 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.0644 S13: -0.0084 REMARK 3 S21: 0.1320 S22: -0.0248 S23: -0.1436 REMARK 3 S31: 0.0060 S32: 0.2272 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 211 D 240 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3200 15.8080 38.6510 REMARK 3 T TENSOR REMARK 3 T11: 0.0556 T22: 0.0649 REMARK 3 T33: 0.0588 T12: -0.0430 REMARK 3 T13: -0.0004 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.6831 L22: 1.7265 REMARK 3 L33: 4.2775 L12: -0.2207 REMARK 3 L13: -0.3822 L23: 1.3294 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: -0.0427 S13: -0.0553 REMARK 3 S21: 0.0569 S22: 0.0069 S23: 0.0933 REMARK 3 S31: 0.2606 S32: -0.3337 S33: 0.0385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115798 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : 0.60700 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ARZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 0.2M SODIUM REMARK 280 ACTETATE , PH 4.5, MICROBATCH UNDER OIL SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.80500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.80500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -331.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 36 REMARK 465 THR A 37 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 MET C -2 REMARK 465 ALA C -1 REMARK 465 MET D -2 REMARK 465 ALA D -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 32 CG OD1 ND2 REMARK 470 THR A 33 OG1 CG2 REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 PHE A 65 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 81 OG1 CG2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ASN A 89 CG OD1 ND2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 SER B 0 OG REMARK 470 SER C 0 OG REMARK 470 THR C 37 OG1 CG2 REMARK 470 SER D 0 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 35 CG CD CE NZ REMARK 480 LYS A 50 CB CG CD CE NZ REMARK 480 LYS B 35 CD CE NZ REMARK 480 LYS B 50 CG CD CE NZ REMARK 480 LYS D 35 CD CE NZ REMARK 480 LYS D 50 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 35 CG LYS B 35 CD -0.230 REMARK 500 LYS B 50 CB LYS B 50 CG 0.244 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 35 CB - CG - CD ANGL. DEV. = 25.3 DEGREES REMARK 500 LYS D 50 CB - CG - CD ANGL. DEV. = 17.0 DEGREES REMARK 500 LYS D 50 CG - CD - CE ANGL. DEV. = 18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 8 54.42 -140.97 REMARK 500 LYS A 50 -72.32 -48.76 REMARK 500 SER A 59 -130.05 -141.58 REMARK 500 PRO B 39 34.08 -87.56 REMARK 500 THR C 37 -0.65 77.87 REMARK 500 GLU C 169 19.85 55.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 247 DBREF 3QY9 A 1 240 UNP Q5HG24 DAPB_STAAC 1 240 DBREF 3QY9 B 1 240 UNP Q5HG24 DAPB_STAAC 1 240 DBREF 3QY9 C 1 240 UNP Q5HG24 DAPB_STAAC 1 240 DBREF 3QY9 D 1 240 UNP Q5HG24 DAPB_STAAC 1 240 SEQADV 3QY9 MET A -2 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 ALA A -1 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 SER A 0 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 MET B -2 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 ALA B -1 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 SER B 0 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 MET C -2 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 ALA C -1 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 SER C 0 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 MET D -2 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 ALA D -1 UNP Q5HG24 EXPRESSION TAG SEQADV 3QY9 SER D 0 UNP Q5HG24 EXPRESSION TAG SEQRES 1 A 243 MET ALA SER MET LYS ILE LEU LEU ILE GLY TYR GLY ALA SEQRES 2 A 243 MET ASN GLN ARG VAL ALA ARG LEU ALA GLU GLU LYS GLY SEQRES 3 A 243 HIS GLU ILE VAL GLY VAL ILE GLU ASN THR PRO LYS ALA SEQRES 4 A 243 THR THR PRO TYR GLN GLN TYR GLN HIS ILE ALA ASP VAL SEQRES 5 A 243 LYS GLY ALA ASP VAL ALA ILE ASP PHE SER ASN PRO ASN SEQRES 6 A 243 LEU LEU PHE PRO LEU LEU ASP GLU ASP PHE HIS LEU PRO SEQRES 7 A 243 LEU VAL VAL ALA THR THR GLY GLU LYS GLU LYS LEU LEU SEQRES 8 A 243 ASN LYS LEU ASP GLU LEU SER GLN ASN MET PRO VAL PHE SEQRES 9 A 243 PHE SER ALA ASN MET SER TYR GLY VAL HIS ALA LEU THR SEQRES 10 A 243 LYS ILE LEU ALA ALA ALA VAL PRO LEU LEU ASP ASP PHE SEQRES 11 A 243 ASP ILE GLU LEU THR GLU ALA HIS HIS ASN LYS LYS VAL SEQRES 12 A 243 ASP ALA PRO SER GLY THR LEU GLU LYS LEU TYR ASP VAL SEQRES 13 A 243 ILE VAL SER LEU LYS GLU ASN VAL THR PRO VAL TYR ASP SEQRES 14 A 243 ARG HIS GLU LEU ASN GLU LYS ARG GLN PRO GLN ASP ILE SEQRES 15 A 243 GLY ILE HIS SER ILE ARG GLY GLY THR ILE VAL GLY GLU SEQRES 16 A 243 HIS GLU VAL LEU PHE ALA GLY THR ASP GLU THR ILE GLN SEQRES 17 A 243 ILE THR HIS ARG ALA GLN SER LYS ASP ILE PHE ALA ASN SEQRES 18 A 243 GLY ALA ILE GLN ALA ALA GLU ARG LEU VAL ASN LYS PRO SEQRES 19 A 243 ASN GLY PHE TYR THR PHE ASP ASN LEU SEQRES 1 B 243 MET ALA SER MET LYS ILE LEU LEU ILE GLY TYR GLY ALA SEQRES 2 B 243 MET ASN GLN ARG VAL ALA ARG LEU ALA GLU GLU LYS GLY SEQRES 3 B 243 HIS GLU ILE VAL GLY VAL ILE GLU ASN THR PRO LYS ALA SEQRES 4 B 243 THR THR PRO TYR GLN GLN TYR GLN HIS ILE ALA ASP VAL SEQRES 5 B 243 LYS GLY ALA ASP VAL ALA ILE ASP PHE SER ASN PRO ASN SEQRES 6 B 243 LEU LEU PHE PRO LEU LEU ASP GLU ASP PHE HIS LEU PRO SEQRES 7 B 243 LEU VAL VAL ALA THR THR GLY GLU LYS GLU LYS LEU LEU SEQRES 8 B 243 ASN LYS LEU ASP GLU LEU SER GLN ASN MET PRO VAL PHE SEQRES 9 B 243 PHE SER ALA ASN MET SER TYR GLY VAL HIS ALA LEU THR SEQRES 10 B 243 LYS ILE LEU ALA ALA ALA VAL PRO LEU LEU ASP ASP PHE SEQRES 11 B 243 ASP ILE GLU LEU THR GLU ALA HIS HIS ASN LYS LYS VAL SEQRES 12 B 243 ASP ALA PRO SER GLY THR LEU GLU LYS LEU TYR ASP VAL SEQRES 13 B 243 ILE VAL SER LEU LYS GLU ASN VAL THR PRO VAL TYR ASP SEQRES 14 B 243 ARG HIS GLU LEU ASN GLU LYS ARG GLN PRO GLN ASP ILE SEQRES 15 B 243 GLY ILE HIS SER ILE ARG GLY GLY THR ILE VAL GLY GLU SEQRES 16 B 243 HIS GLU VAL LEU PHE ALA GLY THR ASP GLU THR ILE GLN SEQRES 17 B 243 ILE THR HIS ARG ALA GLN SER LYS ASP ILE PHE ALA ASN SEQRES 18 B 243 GLY ALA ILE GLN ALA ALA GLU ARG LEU VAL ASN LYS PRO SEQRES 19 B 243 ASN GLY PHE TYR THR PHE ASP ASN LEU SEQRES 1 C 243 MET ALA SER MET LYS ILE LEU LEU ILE GLY TYR GLY ALA SEQRES 2 C 243 MET ASN GLN ARG VAL ALA ARG LEU ALA GLU GLU LYS GLY SEQRES 3 C 243 HIS GLU ILE VAL GLY VAL ILE GLU ASN THR PRO LYS ALA SEQRES 4 C 243 THR THR PRO TYR GLN GLN TYR GLN HIS ILE ALA ASP VAL SEQRES 5 C 243 LYS GLY ALA ASP VAL ALA ILE ASP PHE SER ASN PRO ASN SEQRES 6 C 243 LEU LEU PHE PRO LEU LEU ASP GLU ASP PHE HIS LEU PRO SEQRES 7 C 243 LEU VAL VAL ALA THR THR GLY GLU LYS GLU LYS LEU LEU SEQRES 8 C 243 ASN LYS LEU ASP GLU LEU SER GLN ASN MET PRO VAL PHE SEQRES 9 C 243 PHE SER ALA ASN MET SER TYR GLY VAL HIS ALA LEU THR SEQRES 10 C 243 LYS ILE LEU ALA ALA ALA VAL PRO LEU LEU ASP ASP PHE SEQRES 11 C 243 ASP ILE GLU LEU THR GLU ALA HIS HIS ASN LYS LYS VAL SEQRES 12 C 243 ASP ALA PRO SER GLY THR LEU GLU LYS LEU TYR ASP VAL SEQRES 13 C 243 ILE VAL SER LEU LYS GLU ASN VAL THR PRO VAL TYR ASP SEQRES 14 C 243 ARG HIS GLU LEU ASN GLU LYS ARG GLN PRO GLN ASP ILE SEQRES 15 C 243 GLY ILE HIS SER ILE ARG GLY GLY THR ILE VAL GLY GLU SEQRES 16 C 243 HIS GLU VAL LEU PHE ALA GLY THR ASP GLU THR ILE GLN SEQRES 17 C 243 ILE THR HIS ARG ALA GLN SER LYS ASP ILE PHE ALA ASN SEQRES 18 C 243 GLY ALA ILE GLN ALA ALA GLU ARG LEU VAL ASN LYS PRO SEQRES 19 C 243 ASN GLY PHE TYR THR PHE ASP ASN LEU SEQRES 1 D 243 MET ALA SER MET LYS ILE LEU LEU ILE GLY TYR GLY ALA SEQRES 2 D 243 MET ASN GLN ARG VAL ALA ARG LEU ALA GLU GLU LYS GLY SEQRES 3 D 243 HIS GLU ILE VAL GLY VAL ILE GLU ASN THR PRO LYS ALA SEQRES 4 D 243 THR THR PRO TYR GLN GLN TYR GLN HIS ILE ALA ASP VAL SEQRES 5 D 243 LYS GLY ALA ASP VAL ALA ILE ASP PHE SER ASN PRO ASN SEQRES 6 D 243 LEU LEU PHE PRO LEU LEU ASP GLU ASP PHE HIS LEU PRO SEQRES 7 D 243 LEU VAL VAL ALA THR THR GLY GLU LYS GLU LYS LEU LEU SEQRES 8 D 243 ASN LYS LEU ASP GLU LEU SER GLN ASN MET PRO VAL PHE SEQRES 9 D 243 PHE SER ALA ASN MET SER TYR GLY VAL HIS ALA LEU THR SEQRES 10 D 243 LYS ILE LEU ALA ALA ALA VAL PRO LEU LEU ASP ASP PHE SEQRES 11 D 243 ASP ILE GLU LEU THR GLU ALA HIS HIS ASN LYS LYS VAL SEQRES 12 D 243 ASP ALA PRO SER GLY THR LEU GLU LYS LEU TYR ASP VAL SEQRES 13 D 243 ILE VAL SER LEU LYS GLU ASN VAL THR PRO VAL TYR ASP SEQRES 14 D 243 ARG HIS GLU LEU ASN GLU LYS ARG GLN PRO GLN ASP ILE SEQRES 15 D 243 GLY ILE HIS SER ILE ARG GLY GLY THR ILE VAL GLY GLU SEQRES 16 D 243 HIS GLU VAL LEU PHE ALA GLY THR ASP GLU THR ILE GLN SEQRES 17 D 243 ILE THR HIS ARG ALA GLN SER LYS ASP ILE PHE ALA ASN SEQRES 18 D 243 GLY ALA ILE GLN ALA ALA GLU ARG LEU VAL ASN LYS PRO SEQRES 19 D 243 ASN GLY PHE TYR THR PHE ASP ASN LEU HET SO4 A 241 5 HET SO4 A 242 5 HET SO4 A 243 5 HET SO4 A 244 5 HET GOL A 245 6 HET ACT B 241 4 HET SO4 B 242 5 HET SO4 B 243 5 HET SO4 B 244 5 HET SO4 B 245 5 HET SO4 B 246 5 HET SO4 B 247 5 HET GOL B 248 6 HET SO4 C 241 5 HET SO4 C 242 5 HET SO4 C 243 5 HET SO4 C 244 5 HET SO4 C 245 5 HET SO4 C 246 5 HET ACT D 241 4 HET SO4 D 242 5 HET SO4 D 243 5 HET SO4 D 244 5 HET SO4 D 245 5 HET SO4 D 246 5 HET SO4 D 247 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 22(O4 S 2-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 10 ACT 2(C2 H3 O2 1-) FORMUL 31 HOH *711(H2 O) HELIX 1 1 GLY A 9 LYS A 22 1 14 HELIX 2 2 ASN A 60 ASP A 69 1 10 HELIX 3 3 GLU A 83 SER A 95 1 13 HELIX 4 4 SER A 107 LEU A 124 1 18 HELIX 5 5 SER A 144 LYS A 158 1 15 HELIX 6 6 LYS A 213 VAL A 228 1 16 HELIX 7 7 GLY B 9 LYS B 22 1 14 HELIX 8 8 HIS B 45 VAL B 49 5 5 HELIX 9 9 ASN B 60 ASP B 69 5 10 HELIX 10 10 LYS B 84 SER B 95 1 12 HELIX 11 11 SER B 107 LEU B 124 1 18 HELIX 12 12 SER B 144 LYS B 158 1 15 HELIX 13 13 ASP B 166 ASN B 171 1 6 HELIX 14 14 LYS B 213 VAL B 228 1 16 HELIX 15 15 GLY C 9 LYS C 22 1 14 HELIX 16 16 HIS C 45 VAL C 49 5 5 HELIX 17 17 ASN C 60 ASP C 69 5 10 HELIX 18 18 LYS C 84 SER C 95 1 12 HELIX 19 19 SER C 107 LEU C 124 1 18 HELIX 20 20 SER C 144 LYS C 158 1 15 HELIX 21 21 LYS C 213 VAL C 228 1 16 HELIX 22 22 GLY D 9 LYS D 22 1 14 HELIX 23 23 HIS D 45 VAL D 49 5 5 HELIX 24 24 ASN D 60 ASP D 69 5 10 HELIX 25 25 LYS D 84 SER D 95 1 12 HELIX 26 26 SER D 107 LEU D 124 1 18 HELIX 27 27 SER D 144 LYS D 158 1 15 HELIX 28 28 LYS D 213 VAL D 228 1 16 SHEET 1 A 6 GLU A 25 ILE A 30 0 SHEET 2 A 6 LYS A 2 ILE A 6 1 N ILE A 3 O GLU A 25 SHEET 3 A 6 VAL A 54 ASP A 57 1 O VAL A 54 N LEU A 4 SHEET 4 A 6 LEU A 76 VAL A 78 1 O VAL A 77 N ASP A 57 SHEET 5 A 6 PRO A 99 PHE A 102 1 O PHE A 101 N LEU A 76 SHEET 6 A 6 GLY A 233 TYR A 235 1 O TYR A 235 N VAL A 100 SHEET 1 B10 THR A 162 VAL A 164 0 SHEET 2 B10 ASP A 178 ARG A 185 1 O ILE A 181 N VAL A 164 SHEET 3 B10 ASP A 128 HIS A 135 1 N LEU A 131 O GLY A 180 SHEET 4 B10 GLY A 191 ALA A 198 -1 O ALA A 198 N ASP A 128 SHEET 5 B10 GLU A 202 ALA A 210 -1 O ALA A 210 N GLY A 191 SHEET 6 B10 GLU B 202 ALA B 210 -1 O THR B 207 N GLN A 205 SHEET 7 B10 GLY B 191 ALA B 198 -1 N PHE B 197 O ILE B 204 SHEET 8 B10 ASP B 128 HIS B 135 -1 N THR B 132 O GLU B 194 SHEET 9 B10 ASP B 178 ARG B 185 1 O ILE B 184 N GLU B 133 SHEET 10 B10 THR B 162 VAL B 164 1 N VAL B 164 O ILE B 181 SHEET 1 C 6 GLU B 25 ILE B 30 0 SHEET 2 C 6 LYS B 2 ILE B 6 1 N ILE B 3 O GLU B 25 SHEET 3 C 6 VAL B 54 PHE B 58 1 O VAL B 54 N LEU B 4 SHEET 4 C 6 LEU B 76 ALA B 79 1 O VAL B 77 N ASP B 57 SHEET 5 C 6 PRO B 99 PHE B 102 1 O PHE B 101 N LEU B 76 SHEET 6 C 6 GLY B 233 TYR B 235 1 O TYR B 235 N VAL B 100 SHEET 1 D 7 GLN C 42 TYR C 43 0 SHEET 2 D 7 GLU C 25 ILE C 30 1 N VAL C 29 O TYR C 43 SHEET 3 D 7 LYS C 2 ILE C 6 1 N ILE C 3 O GLU C 25 SHEET 4 D 7 VAL C 54 PHE C 58 1 O VAL C 54 N LEU C 4 SHEET 5 D 7 LEU C 76 ALA C 79 1 O VAL C 77 N ASP C 57 SHEET 6 D 7 PRO C 99 PHE C 102 1 O PHE C 101 N LEU C 76 SHEET 7 D 7 GLY C 233 TYR C 235 1 O TYR C 235 N VAL C 100 SHEET 1 E10 THR C 162 VAL C 164 0 SHEET 2 E10 ASP C 178 ARG C 185 1 O ILE C 179 N THR C 162 SHEET 3 E10 ASP C 128 HIS C 135 1 N LEU C 131 O GLY C 180 SHEET 4 E10 GLY C 191 ALA C 198 -1 O GLU C 194 N THR C 132 SHEET 5 E10 GLU C 202 ALA C 210 -1 O ALA C 210 N GLY C 191 SHEET 6 E10 GLU D 202 ALA D 210 -1 O GLN D 205 N THR C 207 SHEET 7 E10 GLY D 191 ALA D 198 -1 N GLY D 191 O ALA D 210 SHEET 8 E10 ASP D 128 HIS D 135 -1 N THR D 132 O GLU D 194 SHEET 9 E10 ASP D 178 ARG D 185 1 O GLY D 180 N LEU D 131 SHEET 10 E10 THR D 162 VAL D 164 1 N VAL D 164 O ILE D 181 SHEET 1 F 7 GLN D 42 TYR D 43 0 SHEET 2 F 7 GLU D 25 ILE D 30 1 N VAL D 29 O TYR D 43 SHEET 3 F 7 LYS D 2 ILE D 6 1 N ILE D 3 O GLU D 25 SHEET 4 F 7 VAL D 54 PHE D 58 1 O VAL D 54 N LEU D 4 SHEET 5 F 7 LEU D 76 ALA D 79 1 O VAL D 77 N ASP D 57 SHEET 6 F 7 PRO D 99 PHE D 102 1 O PHE D 101 N LEU D 76 SHEET 7 F 7 GLY D 233 TYR D 235 1 O TYR D 235 N VAL D 100 CISPEP 1 ALA A 142 PRO A 143 0 -0.61 CISPEP 2 ALA B 142 PRO B 143 0 -3.48 CISPEP 3 ALA C 142 PRO C 143 0 -3.18 CISPEP 4 ALA D 142 PRO D 143 0 -1.52 SITE 1 AC1 5 HIS A 136 LYS A 213 SO4 A 243 HOH A 273 SITE 2 AC1 5 HOH A 423 SITE 1 AC2 8 LYS A 139 SER A 144 GLY A 145 THR A 146 SITE 2 AC2 8 HOH A 268 HOH A 308 HOH A 505 HOH A 699 SITE 1 AC3 6 LYS A 139 VAL A 140 ASP A 141 SO4 A 241 SITE 2 AC3 6 HOH A 423 HOH A 601 SITE 1 AC4 4 ALA A 10 ARG A 14 LYS A 213 HOH A 508 SITE 1 AC5 5 ARG A 14 SER A 212 LYS A 213 HOH A 269 SITE 2 AC5 5 HOH A 590 SITE 1 AC6 8 LYS B 138 LYS B 139 VAL B 140 ASP B 141 SITE 2 AC6 8 SO4 B 245 HOH B 279 HOH D 303 HOH D 304 SITE 1 AC7 4 ARG B 14 HOH B 257 HOH B 259 HOH C 284 SITE 1 AC8 5 ALA B 10 ARG B 14 LYS B 213 HOH B 304 SITE 2 AC8 5 HOH B 305 SITE 1 AC9 5 VAL B 164 TYR B 165 ASP B 166 LEU B 170 SITE 2 AC9 5 HOH B 478 SITE 1 BC1 6 HIS B 136 LYS B 139 LYS B 213 ACT B 241 SITE 2 BC1 6 HOH B 275 HOH B 279 SITE 1 BC2 9 SER B 103 ALA B 104 ASN B 105 HIS B 111 SITE 2 BC2 9 LYS B 149 PHE B 237 HOH B 341 HOH B 351 SITE 3 BC2 9 HOH B 443 SITE 1 BC3 3 THR B 162 GLN B 177 HOH B 283 SITE 1 BC4 7 HOH B 257 ARG C 14 SER C 212 HOH C 260 SITE 2 BC4 7 HOH C 262 HOH C 284 HOH C 542 SITE 1 BC5 6 THR B 81 LYS B 139 SER B 144 GLY B 145 SITE 2 BC5 6 THR B 146 HOH B 277 SITE 1 BC6 6 LYS C 139 SER C 144 GLY C 145 THR C 146 SITE 2 BC6 6 HOH C 310 HOH C 486 SITE 1 BC7 6 LYS C 139 VAL C 140 ASP C 141 SO4 C 244 SITE 2 BC7 6 HOH C 339 HOH C 598 SITE 1 BC8 6 HIS C 136 LYS C 213 SO4 C 243 HOH C 313 SITE 2 BC8 6 HOH C 339 HOH C 688 SITE 1 BC9 4 ARG C 14 LYS C 213 HOH C 330 HOH C 627 SITE 1 CC1 3 GLY C 9 ALA C 10 HOH C 338 SITE 1 CC2 5 SER D 59 ASN D 60 PRO D 61 THR D 80 SITE 2 CC2 5 HOH D 321 SITE 1 CC3 6 LYS D 139 SER D 144 GLY D 145 THR D 146 SITE 2 CC3 6 HOH D 257 HOH D 300 SITE 1 CC4 6 HIS D 136 LYS D 139 LYS D 213 SO4 D 245 SITE 2 CC4 6 HOH D 316 HOH D 502 SITE 1 CC5 4 ARG D 14 LYS D 213 HOH D 342 HOH D 343 SITE 1 CC6 5 LYS D 139 VAL D 140 ASP D 141 SO4 D 243 SITE 2 CC6 5 HOH D 502 SITE 1 CC7 3 GLY D 9 ALA D 10 HOH D 348 SITE 1 CC8 7 ARG B 226 LYS B 230 ASN D 97 ASN D 232 SITE 2 CC8 7 HOH D 271 HOH D 621 HOH D 689 CRYST1 85.900 112.440 131.610 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007598 0.00000