HEADER HYDROLASE/HYDROLASE INHIBITOR 07-MAR-11 3QZQ TITLE HUMAN ENTEROVIRUS 71 3C PROTEASE MUTANT E71D IN COMPLEX WITH TITLE 2 RUPINTRIVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 3C PROTEASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS 71; SOURCE 3 ORGANISM_TAXID: 39054; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS CHYMOTRYPSIN-FOLD, BETA-RIBBON, HYDROLYSIS, NUCLEUS, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,T.FAN,X.YAO,Z.WU,L.GUO,X.LEI,J.WANG,M.WANG,Q.JIN,S.CUI REVDAT 5 21-FEB-24 3QZQ 1 REMARK SEQADV REVDAT 4 06-MAY-15 3QZQ 1 COMPND REVDAT 3 28-SEP-11 3QZQ 1 JRNL REVDAT 2 24-AUG-11 3QZQ 1 AUTHOR JRNL REVDAT 1 10-AUG-11 3QZQ 0 JRNL AUTH J.WANG,T.FAN,X.YAO,Z.WU,L.GUO,X.LEI,J.WANG,M.WANG,Q.JIN, JRNL AUTH 2 S.CUI JRNL TITL CRYSTAL STRUCTURES OF ENTEROVIRUS 71 3C PROTEASE COMPLEXED JRNL TITL 2 WITH RUPINTRIVIR REVEAL THE ROLES OF CATALYTICALLY IMPORTANT JRNL TITL 3 RESIDUES. JRNL REF J.VIROL. V. 85 10021 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21813612 JRNL DOI 10.1128/JVI.05107-11 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 73112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0629 - 5.0271 0.93 2932 144 0.2427 0.2531 REMARK 3 2 5.0271 - 3.9939 0.98 2903 169 0.1616 0.1917 REMARK 3 3 3.9939 - 3.4901 0.99 2899 160 0.1806 0.2149 REMARK 3 4 3.4901 - 3.1715 1.00 2911 152 0.1827 0.2195 REMARK 3 5 3.1715 - 2.9444 1.00 2910 153 0.1940 0.2492 REMARK 3 6 2.9444 - 2.7710 1.00 2877 147 0.1852 0.2600 REMARK 3 7 2.7710 - 2.6323 1.00 2873 159 0.1982 0.2338 REMARK 3 8 2.6323 - 2.5178 1.00 2872 160 0.1885 0.2846 REMARK 3 9 2.5178 - 2.4209 0.99 2837 172 0.1815 0.2840 REMARK 3 10 2.4209 - 2.3374 0.99 2839 146 0.1875 0.2654 REMARK 3 11 2.3374 - 2.2644 0.98 2765 153 0.1933 0.2520 REMARK 3 12 2.2644 - 2.1997 0.97 2821 144 0.1899 0.2522 REMARK 3 13 2.1997 - 2.1418 0.97 2758 141 0.1845 0.2577 REMARK 3 14 2.1418 - 2.0896 0.96 2752 145 0.1714 0.2551 REMARK 3 15 2.0896 - 2.0421 0.95 2694 150 0.1722 0.2484 REMARK 3 16 2.0421 - 1.9986 0.93 2666 124 0.1801 0.2721 REMARK 3 17 1.9986 - 1.9587 0.90 2572 125 0.1893 0.2755 REMARK 3 18 1.9587 - 1.9217 0.88 2521 107 0.1872 0.2685 REMARK 3 19 1.9217 - 1.8874 0.87 2467 138 0.1987 0.3080 REMARK 3 20 1.8874 - 1.8554 0.86 2456 140 0.1853 0.2641 REMARK 3 21 1.8554 - 1.8255 0.87 2453 130 0.1874 0.2898 REMARK 3 22 1.8255 - 1.7974 0.85 2438 131 0.1881 0.3143 REMARK 3 23 1.7974 - 1.7710 0.86 2432 129 0.1984 0.2690 REMARK 3 24 1.7710 - 1.7460 0.85 2373 132 0.2018 0.2820 REMARK 3 25 1.7460 - 1.7224 0.82 2345 121 0.2204 0.3340 REMARK 3 26 1.7224 - 1.7001 0.73 2082 92 0.2206 0.3269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.67 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 5942 REMARK 3 ANGLE : 1.021 8066 REMARK 3 CHIRALITY : 0.103 908 REMARK 3 PLANARITY : 0.007 1046 REMARK 3 DIHEDRAL : 15.885 2320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GE MULTILAYERS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73601 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 3.180 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.77 REMARK 200 R MERGE FOR SHELL (I) : 0.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 22.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES 0.1M, PEG4000 10%, ISO-PROPANOL REMARK 280 20%, PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.78200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 71.22150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 71.22150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.39100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 71.22150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 71.22150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.17300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 71.22150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.22150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.39100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 71.22150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.22150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.17300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.78200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 390 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 SER A 181 REMARK 465 GLU A 182 REMARK 465 GLN A 183 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 GLU B 182 REMARK 465 GLN B 183 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 SER C 181 REMARK 465 GLU C 182 REMARK 465 GLN C 183 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 GLY D 1 REMARK 465 PRO D 2 REMARK 465 SER D 3 REMARK 465 LEU D 4 REMARK 465 ASP D 5 REMARK 465 SER D 181 REMARK 465 GLU D 182 REMARK 465 GLN D 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 181 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE A 124 CE2 REMARK 480 PHE B 124 CE2 REMARK 480 PHE C 124 CE2 REMARK 480 PHE D 124 CE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 266 O HOH D 485 1.83 REMARK 500 O HOH C 547 O HOH C 557 1.94 REMARK 500 SG CYS C 147 C19 AG7 C 501 1.96 REMARK 500 SG CYS A 147 C19 AG7 A 501 1.98 REMARK 500 OE1 GLN D 66 O HOH D 291 1.98 REMARK 500 SG CYS B 147 C19 AG7 B 501 1.99 REMARK 500 O GLU D 81 O HOH D 554 2.00 REMARK 500 SG CYS D 147 C19 AG7 D 501 2.02 REMARK 500 OD1 ASP B 58 O HOH B 556 2.04 REMARK 500 O HOH D 322 O HOH D 362 2.05 REMARK 500 O TYR A 122 O HOH A 284 2.07 REMARK 500 O HOH A 284 O HOH B 449 2.10 REMARK 500 O ALA A 180 O HOH A 578 2.12 REMARK 500 O HOH A 224 O HOH A 592 2.12 REMARK 500 OD2 ASP A 32 O HOH A 516 2.13 REMARK 500 O HOH A 478 O HOH A 488 2.13 REMARK 500 O ARG D 13 O HOH D 232 2.14 REMARK 500 O HOH C 459 O HOH C 515 2.15 REMARK 500 O HOH A 235 O HOH A 292 2.16 REMARK 500 O HOH A 217 O HOH A 244 2.16 REMARK 500 O HOH A 306 O HOH D 406 2.18 REMARK 500 O HOH B 385 O HOH B 416 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 -5.48 -141.68 REMARK 500 ASP A 32 -114.68 49.64 REMARK 500 TYR A 122 -42.68 -132.51 REMARK 500 VAL A 154 51.56 39.28 REMARK 500 ASP B 32 -124.81 51.06 REMARK 500 TYR B 122 -43.62 -132.10 REMARK 500 ASN C 14 -0.66 -140.57 REMARK 500 ARG C 31 146.39 -174.96 REMARK 500 ASP C 32 -117.98 51.59 REMARK 500 ASP C 64 -155.08 -142.17 REMARK 500 SER C 111 63.69 36.76 REMARK 500 TYR C 122 -50.15 -123.21 REMARK 500 VAL C 154 90.35 7.52 REMARK 500 ASP D 32 -120.92 47.80 REMARK 500 ASP D 64 -156.01 -140.88 REMARK 500 SER D 111 65.48 39.61 REMARK 500 TYR D 122 -54.12 -126.72 REMARK 500 VAL D 154 58.13 36.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 D 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OSY RELATED DB: PDB REMARK 900 THIS IS THE APO STRUCTURE OF THE SAME PROTEIN DBREF 3QZQ A 1 183 UNP E7E815 E7E815_9ENTO 1 183 DBREF 3QZQ B 1 183 UNP E7E815 E7E815_9ENTO 1 183 DBREF 3QZQ C 1 183 UNP E7E815 E7E815_9ENTO 1 183 DBREF 3QZQ D 1 183 UNP E7E815 E7E815_9ENTO 1 183 SEQADV 3QZQ GLY A -3 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ SER A -2 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ HIS A -1 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ MET A 0 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ ASP A 71 UNP E7E815 GLU 71 ENGINEERED MUTATION SEQADV 3QZQ GLY B -3 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ SER B -2 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ HIS B -1 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ MET B 0 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ ASP B 71 UNP E7E815 GLU 71 ENGINEERED MUTATION SEQADV 3QZQ GLY C -3 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ SER C -2 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ HIS C -1 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ MET C 0 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ ASP C 71 UNP E7E815 GLU 71 ENGINEERED MUTATION SEQADV 3QZQ GLY D -3 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ SER D -2 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ HIS D -1 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ MET D 0 UNP E7E815 EXPRESSION TAG SEQADV 3QZQ ASP D 71 UNP E7E815 GLU 71 ENGINEERED MUTATION SEQRES 1 A 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER SEQRES 2 A 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN SEQRES 3 A 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA SEQRES 4 A 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP SEQRES 5 A 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU SEQRES 6 A 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ASP LEU THR LEU SEQRES 7 A 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR SEQRES 8 A 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA SEQRES 9 A 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE SEQRES 10 A 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN SEQRES 11 A 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN SEQRES 12 A 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SEQRES 13 A 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN SEQRES 14 A 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR SEQRES 15 A 187 PHE ALA SER GLU GLN SEQRES 1 B 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER SEQRES 2 B 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN SEQRES 3 B 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA SEQRES 4 B 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP SEQRES 5 B 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU SEQRES 6 B 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ASP LEU THR LEU SEQRES 7 B 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR SEQRES 8 B 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA SEQRES 9 B 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE SEQRES 10 B 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN SEQRES 11 B 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN SEQRES 12 B 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SEQRES 13 B 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN SEQRES 14 B 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR SEQRES 15 B 187 PHE ALA SER GLU GLN SEQRES 1 C 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER SEQRES 2 C 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN SEQRES 3 C 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA SEQRES 4 C 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP SEQRES 5 C 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU SEQRES 6 C 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ASP LEU THR LEU SEQRES 7 C 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR SEQRES 8 C 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA SEQRES 9 C 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE SEQRES 10 C 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN SEQRES 11 C 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN SEQRES 12 C 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SEQRES 13 C 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN SEQRES 14 C 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR SEQRES 15 C 187 PHE ALA SER GLU GLN SEQRES 1 D 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER SEQRES 2 D 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN SEQRES 3 D 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA SEQRES 4 D 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP SEQRES 5 D 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU SEQRES 6 D 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ASP LEU THR LEU SEQRES 7 D 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR SEQRES 8 D 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA SEQRES 9 D 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE SEQRES 10 D 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN SEQRES 11 D 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN SEQRES 12 D 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SEQRES 13 D 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN SEQRES 14 D 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR SEQRES 15 D 187 PHE ALA SER GLU GLN HET AG7 A 501 83 HET AG7 B 501 83 HET AG7 C 501 83 HET AG7 D 501 83 HETNAM AG7 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE- HETNAM 2 AG7 3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO- HETNAM 3 AG7 PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER HETSYN AG7 RUPINTRIVIR, BOUND FORM FORMUL 5 AG7 4(C31 H41 F N4 O7) FORMUL 9 HOH *598(H2 O) HELIX 1 1 ASP A 5 ASN A 14 1 10 HELIX 2 2 HIS A 40 GLN A 42 5 3 HELIX 3 3 ILE A 86 ILE A 90 5 5 HELIX 4 4 LYS A 175 ALA A 180 5 6 HELIX 5 5 PHE B 6 ASN B 14 1 9 HELIX 6 6 HIS B 40 GLN B 42 5 3 HELIX 7 7 ILE B 86 ILE B 90 5 5 HELIX 8 8 LYS B 175 ALA B 180 5 6 HELIX 9 9 SER C 3 ASN C 14 1 12 HELIX 10 10 HIS C 40 GLN C 42 5 3 HELIX 11 11 ILE C 86 ILE C 90 5 5 HELIX 12 12 LYS C 175 ALA C 180 5 6 HELIX 13 13 PHE D 6 ASN D 14 1 9 HELIX 14 14 HIS D 40 GLN D 42 5 3 HELIX 15 15 ILE D 86 ILE D 90 5 5 HELIX 16 16 LYS D 175 ALA D 180 5 6 SHEET 1 A 7 VAL A 15 THR A 20 0 SHEET 2 A 7 GLY A 23 ARG A 31 -1 O MET A 27 N ARG A 16 SHEET 3 A 7 LEU A 34 PRO A 38 -1 O LEU A 34 N ARG A 31 SHEET 4 A 7 LEU A 72 LEU A 77 -1 O THR A 73 N LEU A 37 SHEET 5 A 7 LYS A 52 GLU A 61 -1 N VAL A 60 O LEU A 74 SHEET 6 A 7 THR A 46 ILE A 49 -1 N ILE A 49 O LYS A 52 SHEET 7 A 7 VAL A 15 THR A 20 -1 N GLN A 19 O TRP A 48 SHEET 1 B 7 ALA A 97 ILE A 104 0 SHEET 2 B 7 MET A 112 LEU A 127 -1 O VAL A 114 N LEU A 102 SHEET 3 B 7 LYS A 130 TYR A 138 -1 O THR A 135 N GLY A 123 SHEET 4 B 7 GLY A 169 GLY A 173 -1 O GLY A 169 N TYR A 138 SHEET 5 B 7 LYS A 156 GLY A 164 -1 N ILE A 160 O ALA A 172 SHEET 6 B 7 VAL A 150 SER A 153 -1 N VAL A 151 O GLY A 159 SHEET 7 B 7 ALA A 97 ILE A 104 -1 N THR A 101 O THR A 152 SHEET 1 C 7 VAL B 15 THR B 20 0 SHEET 2 C 7 GLY B 23 ARG B 31 -1 O MET B 27 N ARG B 16 SHEET 3 C 7 LEU B 34 PRO B 38 -1 O LEU B 34 N ARG B 31 SHEET 4 C 7 LEU B 72 LEU B 77 -1 O ILE B 75 N ALA B 35 SHEET 5 C 7 LYS B 52 GLU B 61 -1 N VAL B 60 O LEU B 74 SHEET 6 C 7 THR B 46 ILE B 49 -1 N ILE B 49 O LYS B 52 SHEET 7 C 7 VAL B 15 THR B 20 -1 N GLN B 19 O TRP B 48 SHEET 1 D 7 ALA B 97 ILE B 104 0 SHEET 2 D 7 MET B 112 LEU B 127 -1 O VAL B 114 N LEU B 102 SHEET 3 D 7 LYS B 130 TYR B 138 -1 O THR B 132 N LEU B 125 SHEET 4 D 7 GLY B 169 GLY B 173 -1 O GLY B 169 N TYR B 138 SHEET 5 D 7 LYS B 156 GLY B 164 -1 N ILE B 160 O ALA B 172 SHEET 6 D 7 VAL B 150 SER B 153 -1 N VAL B 151 O GLY B 159 SHEET 7 D 7 ALA B 97 ILE B 104 -1 N THR B 101 O THR B 152 SHEET 1 E 7 VAL C 15 THR C 20 0 SHEET 2 E 7 GLY C 23 ARG C 31 -1 O PHE C 25 N VAL C 18 SHEET 3 E 7 LEU C 34 PRO C 38 -1 O LEU C 34 N ARG C 31 SHEET 4 E 7 LEU C 72 LEU C 77 -1 O ILE C 75 N ALA C 35 SHEET 5 E 7 LYS C 52 GLU C 61 -1 N VAL C 60 O LEU C 74 SHEET 6 E 7 THR C 46 ILE C 49 -1 N ILE C 49 O LYS C 52 SHEET 7 E 7 VAL C 15 THR C 20 -1 N GLN C 19 O TRP C 48 SHEET 1 F 7 ALA C 97 ILE C 104 0 SHEET 2 F 7 MET C 112 LEU C 127 -1 O VAL C 114 N LEU C 102 SHEET 3 F 7 LYS C 130 TYR C 138 -1 O THR C 132 N LEU C 125 SHEET 4 F 7 GLY C 169 GLY C 173 -1 O GLY C 169 N TYR C 138 SHEET 5 F 7 LYS C 156 GLY C 164 -1 N ILE C 162 O PHE C 170 SHEET 6 F 7 VAL C 150 SER C 153 -1 N VAL C 151 O GLY C 159 SHEET 7 F 7 ALA C 97 ILE C 104 -1 N VAL C 103 O VAL C 150 SHEET 1 G 7 VAL D 15 THR D 20 0 SHEET 2 G 7 GLY D 23 ARG D 31 -1 O PHE D 25 N VAL D 18 SHEET 3 G 7 LEU D 34 PRO D 38 -1 O LEU D 34 N ARG D 31 SHEET 4 G 7 LEU D 72 LEU D 77 -1 O ILE D 75 N ALA D 35 SHEET 5 G 7 LYS D 52 GLU D 61 -1 N VAL D 60 O LEU D 74 SHEET 6 G 7 THR D 46 ILE D 49 -1 N ILE D 49 O LYS D 52 SHEET 7 G 7 VAL D 15 THR D 20 -1 N GLN D 19 O TRP D 48 SHEET 1 H 7 ALA D 97 ILE D 104 0 SHEET 2 H 7 MET D 112 LEU D 127 -1 O VAL D 114 N LEU D 102 SHEET 3 H 7 LYS D 130 TYR D 138 -1 O THR D 132 N LEU D 125 SHEET 4 H 7 GLY D 169 GLY D 173 -1 O GLY D 169 N TYR D 138 SHEET 5 H 7 LYS D 156 GLY D 164 -1 N ILE D 162 O PHE D 170 SHEET 6 H 7 VAL D 150 SER D 153 -1 N VAL D 151 O GLY D 159 SHEET 7 H 7 ALA D 97 ILE D 104 -1 N VAL D 103 O VAL D 150 SITE 1 AC1 17 ARG A 39 HIS A 40 ASN A 126 LEU A 127 SITE 2 AC1 17 SER A 128 LYS A 130 THR A 142 LYS A 143 SITE 3 AC1 17 ALA A 144 GLY A 145 CYS A 147 HIS A 161 SITE 4 AC1 17 ILE A 162 GLY A 163 GLY A 164 ASN A 165 SITE 5 AC1 17 PHE A 170 SITE 1 AC2 20 LEU A 53 ARG B 39 HIS B 40 TYR B 122 SITE 2 AC2 20 LEU B 125 ASN B 126 LEU B 127 SER B 128 SITE 3 AC2 20 LYS B 130 THR B 142 LYS B 143 ALA B 144 SITE 4 AC2 20 GLY B 145 CYS B 147 HIS B 161 ILE B 162 SITE 5 AC2 20 GLY B 163 GLY B 164 ASN B 165 PHE B 170 SITE 1 AC3 20 ARG C 39 HIS C 40 LEU C 125 ASN C 126 SITE 2 AC3 20 LEU C 127 SER C 128 LYS C 130 THR C 142 SITE 3 AC3 20 LYS C 143 ALA C 144 GLY C 145 CYS C 147 SITE 4 AC3 20 HIS C 161 ILE C 162 GLY C 163 GLY C 164 SITE 5 AC3 20 ASN C 165 PHE C 170 HOH C 194 HOH C 198 SITE 1 AC4 21 HOH B 193 ARG D 39 HIS D 40 LEU D 125 SITE 2 AC4 21 ASN D 126 LEU D 127 SER D 128 LYS D 130 SITE 3 AC4 21 THR D 142 LYS D 143 ALA D 144 GLY D 145 SITE 4 AC4 21 CYS D 147 HIS D 161 ILE D 162 GLY D 163 SITE 5 AC4 21 GLY D 164 ASN D 165 PHE D 170 HOH D 258 SITE 6 AC4 21 HOH D 479 CRYST1 142.443 142.443 69.564 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007020 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014375 0.00000