HEADER HYDROLASE/HYDROLASE INHIBITOR 07-MAR-11 3QZQ
TITLE HUMAN ENTEROVIRUS 71 3C PROTEASE MUTANT E71D IN COMPLEX WITH
TITLE 2 RUPINTRIVIR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 3C PROTEIN;
COMPND 3 CHAIN: A, B, C, D;
COMPND 4 SYNONYM: 3C PROTEASE;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS 71;
SOURCE 3 ORGANISM_TAXID: 39054;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A
KEYWDS CHYMOTRYPSIN-FOLD, BETA-RIBBON, HYDROLYSIS, NUCLEUS, HYDROLASE-
KEYWDS 2 HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.WANG,T.FAN,X.YAO,Z.WU,L.GUO,X.LEI,J.WANG,M.WANG,Q.JIN,S.CUI
REVDAT 5 21-FEB-24 3QZQ 1 REMARK SEQADV
REVDAT 4 06-MAY-15 3QZQ 1 COMPND
REVDAT 3 28-SEP-11 3QZQ 1 JRNL
REVDAT 2 24-AUG-11 3QZQ 1 AUTHOR JRNL
REVDAT 1 10-AUG-11 3QZQ 0
JRNL AUTH J.WANG,T.FAN,X.YAO,Z.WU,L.GUO,X.LEI,J.WANG,M.WANG,Q.JIN,
JRNL AUTH 2 S.CUI
JRNL TITL CRYSTAL STRUCTURES OF ENTEROVIRUS 71 3C PROTEASE COMPLEXED
JRNL TITL 2 WITH RUPINTRIVIR REVEAL THE ROLES OF CATALYTICALLY IMPORTANT
JRNL TITL 3 RESIDUES.
JRNL REF J.VIROL. V. 85 10021 2011
JRNL REFN ISSN 0022-538X
JRNL PMID 21813612
JRNL DOI 10.1128/JVI.05107-11
REMARK 2
REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.06
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8
REMARK 3 NUMBER OF REFLECTIONS : 73112
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.201
REMARK 3 R VALUE (WORKING SET) : 0.198
REMARK 3 FREE R VALUE : 0.254
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010
REMARK 3 FREE R VALUE TEST SET COUNT : 3664
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 28.0629 - 5.0271 0.93 2932 144 0.2427 0.2531
REMARK 3 2 5.0271 - 3.9939 0.98 2903 169 0.1616 0.1917
REMARK 3 3 3.9939 - 3.4901 0.99 2899 160 0.1806 0.2149
REMARK 3 4 3.4901 - 3.1715 1.00 2911 152 0.1827 0.2195
REMARK 3 5 3.1715 - 2.9444 1.00 2910 153 0.1940 0.2492
REMARK 3 6 2.9444 - 2.7710 1.00 2877 147 0.1852 0.2600
REMARK 3 7 2.7710 - 2.6323 1.00 2873 159 0.1982 0.2338
REMARK 3 8 2.6323 - 2.5178 1.00 2872 160 0.1885 0.2846
REMARK 3 9 2.5178 - 2.4209 0.99 2837 172 0.1815 0.2840
REMARK 3 10 2.4209 - 2.3374 0.99 2839 146 0.1875 0.2654
REMARK 3 11 2.3374 - 2.2644 0.98 2765 153 0.1933 0.2520
REMARK 3 12 2.2644 - 2.1997 0.97 2821 144 0.1899 0.2522
REMARK 3 13 2.1997 - 2.1418 0.97 2758 141 0.1845 0.2577
REMARK 3 14 2.1418 - 2.0896 0.96 2752 145 0.1714 0.2551
REMARK 3 15 2.0896 - 2.0421 0.95 2694 150 0.1722 0.2484
REMARK 3 16 2.0421 - 1.9986 0.93 2666 124 0.1801 0.2721
REMARK 3 17 1.9986 - 1.9587 0.90 2572 125 0.1893 0.2755
REMARK 3 18 1.9587 - 1.9217 0.88 2521 107 0.1872 0.2685
REMARK 3 19 1.9217 - 1.8874 0.87 2467 138 0.1987 0.3080
REMARK 3 20 1.8874 - 1.8554 0.86 2456 140 0.1853 0.2641
REMARK 3 21 1.8554 - 1.8255 0.87 2453 130 0.1874 0.2898
REMARK 3 22 1.8255 - 1.7974 0.85 2438 131 0.1881 0.3143
REMARK 3 23 1.7974 - 1.7710 0.86 2432 129 0.1984 0.2690
REMARK 3 24 1.7710 - 1.7460 0.85 2373 132 0.2018 0.2820
REMARK 3 25 1.7460 - 1.7224 0.82 2345 121 0.2204 0.3340
REMARK 3 26 1.7224 - 1.7001 0.73 2082 92 0.2206 0.3269
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : 0.40
REMARK 3 B_SOL : 40.67
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.390
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.018 5942
REMARK 3 ANGLE : 1.021 8066
REMARK 3 CHIRALITY : 0.103 908
REMARK 3 PLANARITY : 0.007 1046
REMARK 3 DIHEDRAL : 15.885 2320
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3QZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-11.
REMARK 100 THE DEPOSITION ID IS D_1000064307.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-DEC-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.3
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : GE MULTILAYERS
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK
REMARK 200 DATA SCALING SOFTWARE : D*TREK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73601
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700
REMARK 200 RESOLUTION RANGE LOW (A) : 28.490
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3
REMARK 200 DATA REDUNDANCY : 3.180
REMARK 200 R MERGE (I) : 0.05500
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76
REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5
REMARK 200 DATA REDUNDANCY IN SHELL : 1.77
REMARK 200 R MERGE FOR SHELL (I) : 0.02000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 22.70
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.1
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.59
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES 0.1M, PEG4000 10%, ISO-PROPANOL
REMARK 280 20%, PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.0K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.78200
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 71.22150
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 71.22150
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.39100
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 71.22150
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 71.22150
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.17300
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 71.22150
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.22150
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.39100
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 71.22150
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.22150
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.17300
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.78200
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3, 4
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 4
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH C 390 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 HIS A -1
REMARK 465 MET A 0
REMARK 465 GLY A 1
REMARK 465 PRO A 2
REMARK 465 SER A 3
REMARK 465 LEU A 4
REMARK 465 SER A 181
REMARK 465 GLU A 182
REMARK 465 GLN A 183
REMARK 465 GLY B -3
REMARK 465 SER B -2
REMARK 465 HIS B -1
REMARK 465 MET B 0
REMARK 465 GLY B 1
REMARK 465 PRO B 2
REMARK 465 SER B 3
REMARK 465 LEU B 4
REMARK 465 ASP B 5
REMARK 465 GLU B 182
REMARK 465 GLN B 183
REMARK 465 GLY C -3
REMARK 465 SER C -2
REMARK 465 HIS C -1
REMARK 465 MET C 0
REMARK 465 GLY C 1
REMARK 465 PRO C 2
REMARK 465 SER C 181
REMARK 465 GLU C 182
REMARK 465 GLN C 183
REMARK 465 GLY D -3
REMARK 465 SER D -2
REMARK 465 HIS D -1
REMARK 465 MET D 0
REMARK 465 GLY D 1
REMARK 465 PRO D 2
REMARK 465 SER D 3
REMARK 465 LEU D 4
REMARK 465 ASP D 5
REMARK 465 SER D 181
REMARK 465 GLU D 182
REMARK 465 GLN D 183
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 SER B 181 OG
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 PHE A 124 CE2
REMARK 480 PHE B 124 CE2
REMARK 480 PHE C 124 CE2
REMARK 480 PHE D 124 CE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH D 266 O HOH D 485 1.83
REMARK 500 O HOH C 547 O HOH C 557 1.94
REMARK 500 SG CYS C 147 C19 AG7 C 501 1.96
REMARK 500 SG CYS A 147 C19 AG7 A 501 1.98
REMARK 500 OE1 GLN D 66 O HOH D 291 1.98
REMARK 500 SG CYS B 147 C19 AG7 B 501 1.99
REMARK 500 O GLU D 81 O HOH D 554 2.00
REMARK 500 SG CYS D 147 C19 AG7 D 501 2.02
REMARK 500 OD1 ASP B 58 O HOH B 556 2.04
REMARK 500 O HOH D 322 O HOH D 362 2.05
REMARK 500 O TYR A 122 O HOH A 284 2.07
REMARK 500 O HOH A 284 O HOH B 449 2.10
REMARK 500 O ALA A 180 O HOH A 578 2.12
REMARK 500 O HOH A 224 O HOH A 592 2.12
REMARK 500 OD2 ASP A 32 O HOH A 516 2.13
REMARK 500 O HOH A 478 O HOH A 488 2.13
REMARK 500 O ARG D 13 O HOH D 232 2.14
REMARK 500 O HOH C 459 O HOH C 515 2.15
REMARK 500 O HOH A 235 O HOH A 292 2.16
REMARK 500 O HOH A 217 O HOH A 244 2.16
REMARK 500 O HOH A 306 O HOH D 406 2.18
REMARK 500 O HOH B 385 O HOH B 416 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 14 -5.48 -141.68
REMARK 500 ASP A 32 -114.68 49.64
REMARK 500 TYR A 122 -42.68 -132.51
REMARK 500 VAL A 154 51.56 39.28
REMARK 500 ASP B 32 -124.81 51.06
REMARK 500 TYR B 122 -43.62 -132.10
REMARK 500 ASN C 14 -0.66 -140.57
REMARK 500 ARG C 31 146.39 -174.96
REMARK 500 ASP C 32 -117.98 51.59
REMARK 500 ASP C 64 -155.08 -142.17
REMARK 500 SER C 111 63.69 36.76
REMARK 500 TYR C 122 -50.15 -123.21
REMARK 500 VAL C 154 90.35 7.52
REMARK 500 ASP D 32 -120.92 47.80
REMARK 500 ASP D 64 -156.01 -140.88
REMARK 500 SER D 111 65.48 39.61
REMARK 500 TYR D 122 -54.12 -126.72
REMARK 500 VAL D 154 58.13 36.51
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 B 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 C 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 D 501
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3OSY RELATED DB: PDB
REMARK 900 THIS IS THE APO STRUCTURE OF THE SAME PROTEIN
DBREF 3QZQ A 1 183 UNP E7E815 E7E815_9ENTO 1 183
DBREF 3QZQ B 1 183 UNP E7E815 E7E815_9ENTO 1 183
DBREF 3QZQ C 1 183 UNP E7E815 E7E815_9ENTO 1 183
DBREF 3QZQ D 1 183 UNP E7E815 E7E815_9ENTO 1 183
SEQADV 3QZQ GLY A -3 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ SER A -2 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ HIS A -1 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ MET A 0 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ ASP A 71 UNP E7E815 GLU 71 ENGINEERED MUTATION
SEQADV 3QZQ GLY B -3 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ SER B -2 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ HIS B -1 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ MET B 0 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ ASP B 71 UNP E7E815 GLU 71 ENGINEERED MUTATION
SEQADV 3QZQ GLY C -3 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ SER C -2 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ HIS C -1 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ MET C 0 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ ASP C 71 UNP E7E815 GLU 71 ENGINEERED MUTATION
SEQADV 3QZQ GLY D -3 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ SER D -2 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ HIS D -1 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ MET D 0 UNP E7E815 EXPRESSION TAG
SEQADV 3QZQ ASP D 71 UNP E7E815 GLU 71 ENGINEERED MUTATION
SEQRES 1 A 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER
SEQRES 2 A 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN
SEQRES 3 A 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA
SEQRES 4 A 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP
SEQRES 5 A 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU
SEQRES 6 A 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ASP LEU THR LEU
SEQRES 7 A 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR
SEQRES 8 A 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA
SEQRES 9 A 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE
SEQRES 10 A 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN
SEQRES 11 A 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN
SEQRES 12 A 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR
SEQRES 13 A 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN
SEQRES 14 A 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR
SEQRES 15 A 187 PHE ALA SER GLU GLN
SEQRES 1 B 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER
SEQRES 2 B 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN
SEQRES 3 B 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA
SEQRES 4 B 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP
SEQRES 5 B 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU
SEQRES 6 B 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ASP LEU THR LEU
SEQRES 7 B 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR
SEQRES 8 B 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA
SEQRES 9 B 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE
SEQRES 10 B 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN
SEQRES 11 B 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN
SEQRES 12 B 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR
SEQRES 13 B 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN
SEQRES 14 B 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR
SEQRES 15 B 187 PHE ALA SER GLU GLN
SEQRES 1 C 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER
SEQRES 2 C 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN
SEQRES 3 C 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA
SEQRES 4 C 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP
SEQRES 5 C 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU
SEQRES 6 C 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ASP LEU THR LEU
SEQRES 7 C 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR
SEQRES 8 C 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA
SEQRES 9 C 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE
SEQRES 10 C 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN
SEQRES 11 C 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN
SEQRES 12 C 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR
SEQRES 13 C 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN
SEQRES 14 C 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR
SEQRES 15 C 187 PHE ALA SER GLU GLN
SEQRES 1 D 187 GLY SER HIS MET GLY PRO SER LEU ASP PHE ALA LEU SER
SEQRES 2 D 187 LEU LEU ARG ARG ASN VAL ARG GLN VAL GLN THR ASP GLN
SEQRES 3 D 187 GLY HIS PHE THR MET LEU GLY VAL ARG ASP ARG LEU ALA
SEQRES 4 D 187 VAL LEU PRO ARG HIS SER GLN PRO GLY LYS THR ILE TRP
SEQRES 5 D 187 ILE GLU HIS LYS LEU VAL ASN VAL LEU ASP ALA VAL GLU
SEQRES 6 D 187 LEU VAL ASP GLU GLN GLY VAL ASN LEU ASP LEU THR LEU
SEQRES 7 D 187 ILE THR LEU ASP THR ASN GLU LYS PHE ARG ASP ILE THR
SEQRES 8 D 187 LYS PHE ILE PRO GLU ASN ILE SER THR ALA SER ASP ALA
SEQRES 9 D 187 THR LEU VAL ILE ASN THR GLU HIS MET PRO SER MET PHE
SEQRES 10 D 187 VAL PRO VAL GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN
SEQRES 11 D 187 LEU SER GLY LYS PRO THR HIS ARG THR MET MET TYR ASN
SEQRES 12 D 187 PHE PRO THR LYS ALA GLY GLN CYS GLY GLY VAL VAL THR
SEQRES 13 D 187 SER VAL GLY LYS ILE ILE GLY ILE HIS ILE GLY GLY ASN
SEQRES 14 D 187 GLY ARG GLN GLY PHE CYS ALA GLY LEU LYS ARG SER TYR
SEQRES 15 D 187 PHE ALA SER GLU GLN
HET AG7 A 501 83
HET AG7 B 501 83
HET AG7 C 501 83
HET AG7 D 501 83
HETNAM AG7 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-
HETNAM 2 AG7 3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-
HETNAM 3 AG7 PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
HETSYN AG7 RUPINTRIVIR, BOUND FORM
FORMUL 5 AG7 4(C31 H41 F N4 O7)
FORMUL 9 HOH *598(H2 O)
HELIX 1 1 ASP A 5 ASN A 14 1 10
HELIX 2 2 HIS A 40 GLN A 42 5 3
HELIX 3 3 ILE A 86 ILE A 90 5 5
HELIX 4 4 LYS A 175 ALA A 180 5 6
HELIX 5 5 PHE B 6 ASN B 14 1 9
HELIX 6 6 HIS B 40 GLN B 42 5 3
HELIX 7 7 ILE B 86 ILE B 90 5 5
HELIX 8 8 LYS B 175 ALA B 180 5 6
HELIX 9 9 SER C 3 ASN C 14 1 12
HELIX 10 10 HIS C 40 GLN C 42 5 3
HELIX 11 11 ILE C 86 ILE C 90 5 5
HELIX 12 12 LYS C 175 ALA C 180 5 6
HELIX 13 13 PHE D 6 ASN D 14 1 9
HELIX 14 14 HIS D 40 GLN D 42 5 3
HELIX 15 15 ILE D 86 ILE D 90 5 5
HELIX 16 16 LYS D 175 ALA D 180 5 6
SHEET 1 A 7 VAL A 15 THR A 20 0
SHEET 2 A 7 GLY A 23 ARG A 31 -1 O MET A 27 N ARG A 16
SHEET 3 A 7 LEU A 34 PRO A 38 -1 O LEU A 34 N ARG A 31
SHEET 4 A 7 LEU A 72 LEU A 77 -1 O THR A 73 N LEU A 37
SHEET 5 A 7 LYS A 52 GLU A 61 -1 N VAL A 60 O LEU A 74
SHEET 6 A 7 THR A 46 ILE A 49 -1 N ILE A 49 O LYS A 52
SHEET 7 A 7 VAL A 15 THR A 20 -1 N GLN A 19 O TRP A 48
SHEET 1 B 7 ALA A 97 ILE A 104 0
SHEET 2 B 7 MET A 112 LEU A 127 -1 O VAL A 114 N LEU A 102
SHEET 3 B 7 LYS A 130 TYR A 138 -1 O THR A 135 N GLY A 123
SHEET 4 B 7 GLY A 169 GLY A 173 -1 O GLY A 169 N TYR A 138
SHEET 5 B 7 LYS A 156 GLY A 164 -1 N ILE A 160 O ALA A 172
SHEET 6 B 7 VAL A 150 SER A 153 -1 N VAL A 151 O GLY A 159
SHEET 7 B 7 ALA A 97 ILE A 104 -1 N THR A 101 O THR A 152
SHEET 1 C 7 VAL B 15 THR B 20 0
SHEET 2 C 7 GLY B 23 ARG B 31 -1 O MET B 27 N ARG B 16
SHEET 3 C 7 LEU B 34 PRO B 38 -1 O LEU B 34 N ARG B 31
SHEET 4 C 7 LEU B 72 LEU B 77 -1 O ILE B 75 N ALA B 35
SHEET 5 C 7 LYS B 52 GLU B 61 -1 N VAL B 60 O LEU B 74
SHEET 6 C 7 THR B 46 ILE B 49 -1 N ILE B 49 O LYS B 52
SHEET 7 C 7 VAL B 15 THR B 20 -1 N GLN B 19 O TRP B 48
SHEET 1 D 7 ALA B 97 ILE B 104 0
SHEET 2 D 7 MET B 112 LEU B 127 -1 O VAL B 114 N LEU B 102
SHEET 3 D 7 LYS B 130 TYR B 138 -1 O THR B 132 N LEU B 125
SHEET 4 D 7 GLY B 169 GLY B 173 -1 O GLY B 169 N TYR B 138
SHEET 5 D 7 LYS B 156 GLY B 164 -1 N ILE B 160 O ALA B 172
SHEET 6 D 7 VAL B 150 SER B 153 -1 N VAL B 151 O GLY B 159
SHEET 7 D 7 ALA B 97 ILE B 104 -1 N THR B 101 O THR B 152
SHEET 1 E 7 VAL C 15 THR C 20 0
SHEET 2 E 7 GLY C 23 ARG C 31 -1 O PHE C 25 N VAL C 18
SHEET 3 E 7 LEU C 34 PRO C 38 -1 O LEU C 34 N ARG C 31
SHEET 4 E 7 LEU C 72 LEU C 77 -1 O ILE C 75 N ALA C 35
SHEET 5 E 7 LYS C 52 GLU C 61 -1 N VAL C 60 O LEU C 74
SHEET 6 E 7 THR C 46 ILE C 49 -1 N ILE C 49 O LYS C 52
SHEET 7 E 7 VAL C 15 THR C 20 -1 N GLN C 19 O TRP C 48
SHEET 1 F 7 ALA C 97 ILE C 104 0
SHEET 2 F 7 MET C 112 LEU C 127 -1 O VAL C 114 N LEU C 102
SHEET 3 F 7 LYS C 130 TYR C 138 -1 O THR C 132 N LEU C 125
SHEET 4 F 7 GLY C 169 GLY C 173 -1 O GLY C 169 N TYR C 138
SHEET 5 F 7 LYS C 156 GLY C 164 -1 N ILE C 162 O PHE C 170
SHEET 6 F 7 VAL C 150 SER C 153 -1 N VAL C 151 O GLY C 159
SHEET 7 F 7 ALA C 97 ILE C 104 -1 N VAL C 103 O VAL C 150
SHEET 1 G 7 VAL D 15 THR D 20 0
SHEET 2 G 7 GLY D 23 ARG D 31 -1 O PHE D 25 N VAL D 18
SHEET 3 G 7 LEU D 34 PRO D 38 -1 O LEU D 34 N ARG D 31
SHEET 4 G 7 LEU D 72 LEU D 77 -1 O ILE D 75 N ALA D 35
SHEET 5 G 7 LYS D 52 GLU D 61 -1 N VAL D 60 O LEU D 74
SHEET 6 G 7 THR D 46 ILE D 49 -1 N ILE D 49 O LYS D 52
SHEET 7 G 7 VAL D 15 THR D 20 -1 N GLN D 19 O TRP D 48
SHEET 1 H 7 ALA D 97 ILE D 104 0
SHEET 2 H 7 MET D 112 LEU D 127 -1 O VAL D 114 N LEU D 102
SHEET 3 H 7 LYS D 130 TYR D 138 -1 O THR D 132 N LEU D 125
SHEET 4 H 7 GLY D 169 GLY D 173 -1 O GLY D 169 N TYR D 138
SHEET 5 H 7 LYS D 156 GLY D 164 -1 N ILE D 162 O PHE D 170
SHEET 6 H 7 VAL D 150 SER D 153 -1 N VAL D 151 O GLY D 159
SHEET 7 H 7 ALA D 97 ILE D 104 -1 N VAL D 103 O VAL D 150
SITE 1 AC1 17 ARG A 39 HIS A 40 ASN A 126 LEU A 127
SITE 2 AC1 17 SER A 128 LYS A 130 THR A 142 LYS A 143
SITE 3 AC1 17 ALA A 144 GLY A 145 CYS A 147 HIS A 161
SITE 4 AC1 17 ILE A 162 GLY A 163 GLY A 164 ASN A 165
SITE 5 AC1 17 PHE A 170
SITE 1 AC2 20 LEU A 53 ARG B 39 HIS B 40 TYR B 122
SITE 2 AC2 20 LEU B 125 ASN B 126 LEU B 127 SER B 128
SITE 3 AC2 20 LYS B 130 THR B 142 LYS B 143 ALA B 144
SITE 4 AC2 20 GLY B 145 CYS B 147 HIS B 161 ILE B 162
SITE 5 AC2 20 GLY B 163 GLY B 164 ASN B 165 PHE B 170
SITE 1 AC3 20 ARG C 39 HIS C 40 LEU C 125 ASN C 126
SITE 2 AC3 20 LEU C 127 SER C 128 LYS C 130 THR C 142
SITE 3 AC3 20 LYS C 143 ALA C 144 GLY C 145 CYS C 147
SITE 4 AC3 20 HIS C 161 ILE C 162 GLY C 163 GLY C 164
SITE 5 AC3 20 ASN C 165 PHE C 170 HOH C 194 HOH C 198
SITE 1 AC4 21 HOH B 193 ARG D 39 HIS D 40 LEU D 125
SITE 2 AC4 21 ASN D 126 LEU D 127 SER D 128 LYS D 130
SITE 3 AC4 21 THR D 142 LYS D 143 ALA D 144 GLY D 145
SITE 4 AC4 21 CYS D 147 HIS D 161 ILE D 162 GLY D 163
SITE 5 AC4 21 GLY D 164 ASN D 165 PHE D 170 HOH D 258
SITE 6 AC4 21 HOH D 479
CRYST1 142.443 142.443 69.564 90.00 90.00 90.00 P 41 21 2 32
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007020 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007020 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014375 0.00000