HEADER TRANSCRIPTION/NUCLEAR PROTEIN 07-MAR-11 3QZV TITLE CRYSTAL STRUCTURE OF BPTF PHD-LINKER-BROMO IN COMPLEX WITH HISTONE TITLE 2 H4K12AC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BPTF (UNP RESIDUES 2865-3033); COMPND 5 SYNONYM: BROMODOMAIN AND PHD FINGER-CONTAINING TRANSCRIPTION FACTOR, COMPND 6 FETAL ALZ-50 CLONE 1 PROTEIN, FETAL ALZHEIMER ANTIGEN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: HISTONE H4 7-17; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BPTF, FAC1, FALZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 14 ORGANISM_COMMON: CLAWED FROG,COMMON PLATANNA,PLATANNA; SOURCE 15 ORGANISM_TAXID: 8355; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS PROTEIN-PEPTIDE COMPLEX, ZINC FINGER, ALPHA HELIX BUNDLE, KEYWDS 2 TRANSCRIPTION, HISTONE H4, NUCLEAR, TRANSCRIPTION-NUCLEAR PROTEIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,A.J.RUTHENBURG,D.J.PATEL REVDAT 5 27-NOV-24 3QZV 1 REMARK REVDAT 4 06-DEC-23 3QZV 1 REMARK REVDAT 3 13-SEP-23 3QZV 1 REMARK SEQADV LINK REVDAT 2 15-JUN-11 3QZV 1 JRNL REVDAT 1 01-JUN-11 3QZV 0 JRNL AUTH A.J.RUTHENBURG,H.LI,T.A.MILNE,S.DEWELL,R.K.MCGINTY,M.YUEN, JRNL AUTH 2 B.UEBERHEIDE,Y.DOU,T.W.MUIR,D.J.PATEL,C.D.ALLIS JRNL TITL RECOGNITION OF A MONONUCLEOSOMAL HISTONE MODIFICATION JRNL TITL 2 PATTERN BY BPTF VIA MULTIVALENT INTERACTIONS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 145 692 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 21596426 JRNL DOI 10.1016/J.CELL.2011.03.053 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 13758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1044 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 884 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : 1.95000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1463 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1971 ; 1.159 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 4.805 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;33.028 ;24.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 252 ;15.731 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.741 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 202 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1125 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 866 ; 0.511 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1400 ; 0.984 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 596 ; 1.664 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 571 ; 2.780 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 64 REMARK 3 RESIDUE RANGE : A 175 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6130 -15.1880 -38.7700 REMARK 3 T TENSOR REMARK 3 T11: 0.5358 T22: 0.7776 REMARK 3 T33: 0.2149 T12: 0.1527 REMARK 3 T13: 0.0124 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 4.5704 L22: 5.5395 REMARK 3 L33: 7.3913 L12: -0.9637 REMARK 3 L13: -4.1710 L23: 5.1804 REMARK 3 S TENSOR REMARK 3 S11: -0.6373 S12: 0.2771 S13: -0.2453 REMARK 3 S21: -0.5060 S22: 0.5083 S23: -0.0458 REMARK 3 S31: -0.1029 S32: -0.0588 S33: 0.1290 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4440 6.0700 -15.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1961 REMARK 3 T33: 0.0665 T12: 0.1010 REMARK 3 T13: 0.0038 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 5.4712 L22: 2.0665 REMARK 3 L33: 3.3434 L12: -1.7924 REMARK 3 L13: -1.6224 L23: 0.4629 REMARK 3 S TENSOR REMARK 3 S11: 0.3406 S12: 0.3304 S13: 0.0738 REMARK 3 S21: -0.1784 S22: -0.2972 S23: -0.0301 REMARK 3 S31: 0.0370 S32: 0.0351 S33: -0.0434 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0510 3.6830 -9.1480 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.5349 REMARK 3 T33: 0.3167 T12: -0.0538 REMARK 3 T13: 0.0078 T23: -0.0867 REMARK 3 L TENSOR REMARK 3 L11: 28.1135 L22: 11.8645 REMARK 3 L33: 10.8610 L12: 7.7624 REMARK 3 L13: -0.2130 L23: 1.5922 REMARK 3 S TENSOR REMARK 3 S11: -0.7422 S12: 1.3531 S13: -0.4771 REMARK 3 S21: -0.2239 S22: 0.5510 S23: 0.6176 REMARK 3 S31: 0.4819 S32: -1.6664 S33: 0.1912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3QZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2F6J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG3000, 0.3 M NAACETATE, REMARK 280 0.1 M NA-HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.76250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.25650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.76250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.25650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 THR A 7 REMARK 465 GLY C 13 REMARK 465 GLY C 14 REMARK 465 ALA C 15 REMARK 465 LYS C 16 REMARK 465 ARG C 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 165.24 67.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 175 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 13 SG 108.7 REMARK 620 3 HIS A 34 ND1 100.0 90.6 REMARK 620 4 CYS A 37 SG 112.8 122.3 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 176 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 CYS A 29 SG 108.0 REMARK 620 3 CYS A 53 SG 111.7 114.2 REMARK 620 4 CYS A 56 SG 109.7 107.0 106.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 176 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QZS RELATED DB: PDB REMARK 900 H4K16AC COMPLEX P21 SPACE GROUP REMARK 900 RELATED ID: 3QZT RELATED DB: PDB REMARK 900 H4K16AC COMPLEX C2 SPACE GROUP DBREF 3QZV A 6 174 UNP Q12830 BPTF_HUMAN 2865 3033 DBREF 3QZV C 7 17 UNP P62805 H4_HUMAN 8 18 SEQADV 3QZV GLY A 1 UNP Q12830 EXPRESSION TAG SEQADV 3QZV PRO A 2 UNP Q12830 EXPRESSION TAG SEQADV 3QZV LEU A 3 UNP Q12830 EXPRESSION TAG SEQADV 3QZV GLY A 4 UNP Q12830 EXPRESSION TAG SEQADV 3QZV SER A 5 UNP Q12830 EXPRESSION TAG SEQRES 1 A 174 GLY PRO LEU GLY SER ASP THR LYS LEU TYR CYS ILE CYS SEQRES 2 A 174 LYS THR PRO TYR ASP GLU SER LYS PHE TYR ILE GLY CYS SEQRES 3 A 174 ASP ARG CYS GLN ASN TRP TYR HIS GLY ARG CYS VAL GLY SEQRES 4 A 174 ILE LEU GLN SER GLU ALA GLU LEU ILE ASP GLU TYR VAL SEQRES 5 A 174 CYS PRO GLN CYS GLN SER THR GLU ASP ALA MET THR VAL SEQRES 6 A 174 LEU THR PRO LEU THR GLU LYS ASP TYR GLU GLY LEU LYS SEQRES 7 A 174 ARG VAL LEU ARG SER LEU GLN ALA HIS LYS MET ALA TRP SEQRES 8 A 174 PRO PHE LEU GLU PRO VAL ASP PRO ASN ASP ALA PRO ASP SEQRES 9 A 174 TYR TYR GLY VAL ILE LYS GLU PRO MET ASP LEU ALA THR SEQRES 10 A 174 MET GLU GLU ARG VAL GLN ARG ARG TYR TYR GLU LYS LEU SEQRES 11 A 174 THR GLU PHE VAL ALA ASP MET THR LYS ILE PHE ASP ASN SEQRES 12 A 174 CYS ARG TYR TYR ASN PRO SER ASP SER PRO PHE TYR GLN SEQRES 13 A 174 CYS ALA GLU VAL LEU GLU SER PHE PHE VAL GLN LYS LEU SEQRES 14 A 174 LYS GLY PHE LYS ALA SEQRES 1 C 11 GLY LYS GLY LEU GLY ALY GLY GLY ALA LYS ARG MODRES 3QZV ALY C 12 LYS N(6)-ACETYLLYSINE HET ALY C 12 12 HET ZN A 175 1 HET ZN A 176 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION FORMUL 2 ALY C8 H16 N2 O3 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *142(H2 O) HELIX 1 1 ARG A 36 GLY A 39 5 4 HELIX 2 2 LEU A 41 GLU A 46 1 6 HELIX 3 3 CYS A 53 THR A 64 1 12 HELIX 4 4 THR A 70 ALA A 86 1 17 HELIX 5 5 ALA A 90 LEU A 94 5 5 HELIX 6 6 ASP A 104 ILE A 109 1 6 HELIX 7 7 ASP A 114 ARG A 124 1 11 HELIX 8 8 LYS A 129 ASN A 148 1 20 HELIX 9 9 SER A 152 LEU A 169 1 18 SHEET 1 A 2 LEU A 9 TYR A 10 0 SHEET 2 A 2 THR A 15 PRO A 16 -1 O THR A 15 N TYR A 10 SHEET 1 B 2 TYR A 23 GLY A 25 0 SHEET 2 B 2 TRP A 32 HIS A 34 -1 O TYR A 33 N ILE A 24 LINK C GLY C 11 N ALY C 12 1555 1555 1.33 LINK SG CYS A 11 ZN ZN A 175 1555 1555 2.33 LINK SG CYS A 13 ZN ZN A 175 1555 1555 2.34 LINK SG CYS A 26 ZN ZN A 176 1555 1555 2.30 LINK SG CYS A 29 ZN ZN A 176 1555 1555 2.32 LINK ND1 HIS A 34 ZN ZN A 175 1555 1555 2.16 LINK SG CYS A 37 ZN ZN A 175 1555 1555 2.34 LINK SG CYS A 53 ZN ZN A 176 1555 1555 2.33 LINK SG CYS A 56 ZN ZN A 176 1555 1555 2.32 SITE 1 AC1 4 CYS A 11 CYS A 13 HIS A 34 CYS A 37 SITE 1 AC2 4 CYS A 26 CYS A 29 CYS A 53 CYS A 56 CRYST1 65.525 38.513 87.752 90.00 111.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015261 0.000000 0.005919 0.00000 SCALE2 0.000000 0.025965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012223 0.00000