HEADER HYDROLASE 07-MAR-11 3R09 TITLE CRYSTAL STRUCTURE OF PROBABLE HAD FAMILY HYDROLASE FROM PSEUDOMONAS TITLE 2 FLUORESCENS PF-5 WITH BOUND MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROLASE, HALOACID DEHALOGENASE-LIKE FAMILY; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE HAD FAMILY HYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 220664; SOURCE 4 STRAIN: PF-5 / ATCC BAA-477; SOURCE 5 GENE: PF-5, PFL_5400; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, ENZYME FUNCTION INTITIATIVE, UNKNOWN FUNCTION, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, NYSGXRC, HALOALKANE DEHALOGENASE FAMILY, KEYWDS 4 POSSIBLE HYDROLASE, ENZYME FUNCTION INITIATIVE, EFI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,Y.PATSKOVSKY,R.TORO,J.FREEMAN,S.MILLER,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,D.DUNAWAY-MARIANO,K.N.ALLEN,J.A.GERLT,S.C.ALMO,ENZYME AUTHOR 3 FUNCTION INITIATIVE (EFI),NEW YORK SGX RESEARCH CENTER FOR AUTHOR 4 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 06-DEC-23 3R09 1 REMARK REVDAT 6 13-SEP-23 3R09 1 REMARK REVDAT 5 10-FEB-21 3R09 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 21-NOV-18 3R09 1 AUTHOR REVDAT 3 20-NOV-13 3R09 1 JRNL TITLE REVDAT 2 16-NOV-11 3R09 1 VERSN HETATM REVDAT 1 20-APR-11 3R09 0 JRNL AUTH M.W.VETTING,Y.PATSKOVSKY,R.TORO,J.FREEMAN,S.MILLER, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,D.DUNAWAY-MARIANO,K.N.ALLEN,J.A.GERLT, JRNL AUTH 3 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PROBABLE HAD FAMILY HYDROLASE FROM JRNL TITL 2 PSEUDOMONAS FLUORESCENS PF-5 WITH BOUND MG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 17198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0561 - 3.9950 0.99 2996 159 0.1689 0.1744 REMARK 3 2 3.9950 - 3.1718 0.99 2797 145 0.1738 0.2072 REMARK 3 3 3.1718 - 2.7711 0.99 2715 144 0.1838 0.2453 REMARK 3 4 2.7711 - 2.5179 0.98 2681 143 0.1874 0.1881 REMARK 3 5 2.5179 - 2.3375 0.96 2605 136 0.1982 0.2694 REMARK 3 6 2.3375 - 2.1997 0.95 2547 130 0.1940 0.2381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 33.54 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82820 REMARK 3 B22 (A**2) : 0.82820 REMARK 3 B33 (A**2) : -1.65640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1577 REMARK 3 ANGLE : 0.925 2157 REMARK 3 CHIRALITY : 0.060 242 REMARK 3 PLANARITY : 0.005 285 REMARK 3 DIHEDRAL : 12.691 577 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:23) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5088 6.0248 19.5366 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.0585 REMARK 3 T33: 0.1025 T12: 0.0859 REMARK 3 T13: 0.0371 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.0169 L22: 0.0263 REMARK 3 L33: 0.0162 L12: 0.0075 REMARK 3 L13: -0.0080 L23: -0.0214 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: -0.0157 S13: 0.0034 REMARK 3 S21: -0.0187 S22: 0.0210 S23: -0.0087 REMARK 3 S31: 0.0088 S32: -0.0005 S33: -0.0053 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 24:60) REMARK 3 ORIGIN FOR THE GROUP (A): 65.0748 -7.8634 -2.2895 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.0724 REMARK 3 T33: 0.1468 T12: 0.0183 REMARK 3 T13: -0.0474 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.0380 L22: 0.0113 REMARK 3 L33: 0.0056 L12: -0.0059 REMARK 3 L13: -0.0137 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: -0.0124 S13: 0.0109 REMARK 3 S21: -0.0025 S22: 0.0295 S23: -0.0612 REMARK 3 S31: 0.0238 S32: 0.0362 S33: 0.0212 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 61:85) REMARK 3 ORIGIN FOR THE GROUP (A): 52.0637 -1.8676 16.9236 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.1160 REMARK 3 T33: 0.1582 T12: 0.0532 REMARK 3 T13: 0.0136 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.0772 L22: 0.0345 REMARK 3 L33: 0.0333 L12: 0.0462 REMARK 3 L13: 0.0047 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: 0.0059 S13: -0.0564 REMARK 3 S21: 0.0112 S22: 0.0548 S23: 0.0129 REMARK 3 S31: 0.0318 S32: -0.0135 S33: 0.0029 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 86:96) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2451 7.5974 20.9798 REMARK 3 T TENSOR REMARK 3 T11: 0.1681 T22: 0.0953 REMARK 3 T33: 0.1372 T12: 0.0827 REMARK 3 T13: -0.0440 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.0037 L22: 0.0032 REMARK 3 L33: 0.0113 L12: -0.0034 REMARK 3 L13: 0.0064 L23: -0.0054 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.0074 S13: -0.0221 REMARK 3 S21: -0.0082 S22: -0.0032 S23: 0.0081 REMARK 3 S31: 0.0032 S32: -0.0035 S33: -0.0106 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 97:139) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1659 6.7817 18.8018 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1231 REMARK 3 T33: 0.2082 T12: 0.0461 REMARK 3 T13: -0.0268 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 0.1025 L22: 0.0762 REMARK 3 L33: 0.2163 L12: -0.0791 REMARK 3 L13: -0.1161 L23: 0.0757 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: -0.0052 S13: -0.0852 REMARK 3 S21: 0.0116 S22: -0.0650 S23: 0.1033 REMARK 3 S31: -0.0054 S32: -0.1120 S33: 0.0511 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 140:187) REMARK 3 ORIGIN FOR THE GROUP (A): 53.1554 15.8212 17.4592 REMARK 3 T TENSOR REMARK 3 T11: 0.3177 T22: 0.0355 REMARK 3 T33: 0.0997 T12: 0.1586 REMARK 3 T13: 0.0254 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.0137 L22: 0.0143 REMARK 3 L33: 0.0013 L12: -0.0021 REMARK 3 L13: -0.0005 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.0009 S13: -0.0099 REMARK 3 S21: -0.0578 S22: -0.0096 S23: 0.0362 REMARK 3 S31: -0.0711 S32: -0.0252 S33: -0.0099 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 188:198) REMARK 3 ORIGIN FOR THE GROUP (A): 60.8318 8.2115 27.4667 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.1643 REMARK 3 T33: 0.1361 T12: 0.0923 REMARK 3 T13: 0.0219 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.0548 L22: 0.0620 REMARK 3 L33: 0.0213 L12: -0.0334 REMARK 3 L13: -0.0149 L23: 0.0224 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: -0.0202 S13: 0.0002 REMARK 3 S21: 0.0060 S22: 0.0084 S23: -0.0047 REMARK 3 S31: -0.0119 S32: 0.0060 S33: -0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17605 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 20.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 51.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 15.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44500 REMARK 200 FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3M9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 10 MM HEPES PH 8.5, 150 MM REMARK 280 NACL, 10% GLYCEROL, 5 MM DTT, 10 MM MGCL2, RESERVOIR (2.5 M NAK REMARK 280 PHOSPHATE PH 5.0, 150 MM NACITRATE), SOAK (1.5 M MGSO4, 200 MM REMARK 280 MES PH 5.3, 20% GLYCEROL, 10 MIN, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.76333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 167.52667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.64500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 209.40833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.88167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.76333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 167.52667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 209.40833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 125.64500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.88167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 212 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 13 -76.13 -100.92 REMARK 500 MSE A 13 -75.93 -103.41 REMARK 500 ASP A 174 -149.98 -134.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD2 REMARK 620 2 ASP A 14 O 74.4 REMARK 620 3 ASP A 152 OD1 83.3 90.0 REMARK 620 4 HOH A 314 O 89.1 82.7 170.7 REMARK 620 5 HOH A 342 O 151.4 77.2 99.8 84.3 REMARK 620 6 HOH A 343 O 100.0 152.9 116.0 70.6 103.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M9L RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT MG BOUND REMARK 900 RELATED ID: NYSGXRC-22261A RELATED DB: TARGETDB DBREF 3R09 A 1 197 UNP Q4K5L5 Q4K5L5_PSEF5 1 197 SEQADV 3R09 GLU A 198 UNP Q4K5L5 EXPRESSION TAG SEQADV 3R09 GLY A 199 UNP Q4K5L5 EXPRESSION TAG SEQADV 3R09 HIS A 200 UNP Q4K5L5 EXPRESSION TAG SEQADV 3R09 HIS A 201 UNP Q4K5L5 EXPRESSION TAG SEQADV 3R09 HIS A 202 UNP Q4K5L5 EXPRESSION TAG SEQADV 3R09 HIS A 203 UNP Q4K5L5 EXPRESSION TAG SEQADV 3R09 HIS A 204 UNP Q4K5L5 EXPRESSION TAG SEQADV 3R09 HIS A 205 UNP Q4K5L5 EXPRESSION TAG SEQRES 1 A 205 MSE SER LEU SER GLU ILE LYS HIS TRP VAL PHE ASP MSE SEQRES 2 A 205 ASP GLY THR LEU THR ILE ALA VAL HIS ASP PHE ALA ALA SEQRES 3 A 205 ILE ARG GLU ALA LEU SER ILE PRO ALA GLU ASP ASP ILE SEQRES 4 A 205 LEU THR HIS LEU ALA ALA LEU PRO ALA ASP GLU SER ALA SEQRES 5 A 205 ALA LYS HIS ALA TRP LEU LEU GLU HIS GLU ARG ASP LEU SEQRES 6 A 205 ALA GLN GLY SER ARG PRO ALA PRO GLY ALA VAL GLU LEU SEQRES 7 A 205 VAL ARG GLU LEU ALA GLY ARG GLY TYR ARG LEU GLY ILE SEQRES 8 A 205 LEU THR ARG ASN ALA ARG GLU LEU ALA HIS VAL THR LEU SEQRES 9 A 205 GLU ALA ILE GLY LEU ALA ASP CYS PHE ALA GLU ALA ASP SEQRES 10 A 205 VAL LEU GLY ARG ASP GLU ALA PRO PRO LYS PRO HIS PRO SEQRES 11 A 205 GLY GLY LEU LEU LYS LEU ALA GLU ALA TRP ASP VAL SER SEQRES 12 A 205 PRO SER ARG MSE VAL MSE VAL GLY ASP TYR ARG PHE ASP SEQRES 13 A 205 LEU ASP CYS GLY ARG ALA ALA GLY THR ARG THR VAL LEU SEQRES 14 A 205 VAL ASN LEU PRO ASP ASN PRO TRP PRO GLU LEU THR ASP SEQRES 15 A 205 TRP HIS ALA ARG ASP CYS ALA GLN LEU ARG ASP LEU LEU SEQRES 16 A 205 SER ALA GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3R09 MSE A 13 MET SELENOMETHIONINE MODRES 3R09 MSE A 147 MET SELENOMETHIONINE MODRES 3R09 MSE A 149 MET SELENOMETHIONINE HET MSE A 13 16 HET MSE A 147 8 HET MSE A 149 8 HET MG A 206 1 HET SO4 A 207 5 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *158(H2 O) HELIX 1 1 SER A 2 ILE A 6 5 5 HELIX 2 2 ASP A 23 LEU A 31 1 9 HELIX 3 3 ASP A 38 LEU A 46 1 9 HELIX 4 4 PRO A 47 HIS A 61 1 15 HELIX 5 5 HIS A 61 LEU A 65 1 5 HELIX 6 6 GLY A 74 ARG A 85 1 12 HELIX 7 7 ALA A 96 ILE A 107 1 12 HELIX 8 8 LEU A 109 PHE A 113 5 5 HELIX 9 9 ALA A 114 ALA A 116 5 3 HELIX 10 10 PRO A 130 ASP A 141 1 12 HELIX 11 11 SER A 143 SER A 145 5 3 HELIX 12 12 TYR A 153 GLY A 164 1 12 HELIX 13 13 TRP A 177 THR A 181 5 5 HELIX 14 14 ASP A 187 GLU A 198 1 12 SHEET 1 A 6 VAL A 118 LEU A 119 0 SHEET 2 A 6 ARG A 88 LEU A 92 1 N ILE A 91 O LEU A 119 SHEET 3 A 6 HIS A 8 PHE A 11 1 N TRP A 9 O GLY A 90 SHEET 4 A 6 MSE A 147 GLY A 151 1 O VAL A 150 N VAL A 10 SHEET 5 A 6 ARG A 166 VAL A 170 1 O VAL A 168 N MSE A 149 SHEET 6 A 6 TRP A 183 ALA A 185 1 O ALA A 185 N LEU A 169 SHEET 1 B 2 THR A 18 HIS A 22 0 SHEET 2 B 2 ALA A 66 PRO A 71 -1 O ARG A 70 N ILE A 19 LINK C ASP A 12 N AMSE A 13 1555 1555 1.33 LINK C ASP A 12 N BMSE A 13 1555 1555 1.33 LINK C AMSE A 13 N ASP A 14 1555 1555 1.33 LINK C BMSE A 13 N ASP A 14 1555 1555 1.33 LINK C ARG A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N VAL A 148 1555 1555 1.33 LINK C VAL A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N VAL A 150 1555 1555 1.34 LINK OD2 ASP A 12 MG MG A 206 1555 1555 2.29 LINK O ASP A 14 MG MG A 206 1555 1555 2.35 LINK OD1 ASP A 152 MG MG A 206 1555 1555 2.53 LINK MG MG A 206 O HOH A 314 1555 1555 2.45 LINK MG MG A 206 O HOH A 342 1555 1555 2.25 LINK MG MG A 206 O HOH A 343 1555 1555 2.36 CISPEP 1 LYS A 127 PRO A 128 0 4.22 SITE 1 AC1 7 ASP A 12 ASP A 14 ASP A 152 ASP A 156 SITE 2 AC1 7 HOH A 314 HOH A 342 HOH A 343 SITE 1 AC2 3 HIS A 8 ARG A 146 HOH A 219 CRYST1 66.299 66.299 251.290 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015083 0.008708 0.000000 0.00000 SCALE2 0.000000 0.017417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003979 0.00000