HEADER DNA BINDING PROTEIN 08-MAR-11 3R0J TITLE STRUCTURE OF PHOP FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL COMPND 3 POSITIVE REGULATOR PHOP; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: PHOP, RV0757; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BETA-ALPHA FOLD, WINGED HELIX-TURN-HELIX, TRANSCRIPTION REGULATOR, KEYWDS 2 DNA BINDING, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MENON,S.WANG REVDAT 3 29-OCT-14 3R0J 1 AUTHOR REVDAT 2 31-AUG-11 3R0J 1 FORMUL REVDAT 1 13-JUL-11 3R0J 0 JRNL AUTH S.MENON,S.WANG JRNL TITL STRUCTURE OF THE RESPONSE REGULATOR PHOP FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS REVEALS A DIMER THROUGH THE RECEIVER DOMAIN. JRNL REF BIOCHEMISTRY V. 50 5948 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21634789 JRNL DOI 10.1021/BI2005575 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 21622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1528 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.80000 REMARK 3 B22 (A**2) : 3.32000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.929 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3598 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4879 ; 1.589 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 5.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;33.365 ;22.606 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 617 ;16.952 ;15.049 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;22.333 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2682 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2205 ; 0.756 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3562 ; 1.458 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1393 ; 2.495 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1317 ; 4.048 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 19 A 84 3 REMARK 3 1 B 19 B 84 3 REMARK 3 2 A 86 A 139 3 REMARK 3 2 B 86 B 139 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 480 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 A (A): 440 ; 0.050 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 480 ; 0.130 ; 0.500 REMARK 3 LOOSE THERMAL 1 A (A**2): 440 ; 0.150 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 151 A 225 3 REMARK 3 1 B 151 B 225 3 REMARK 3 2 A 230 A 243 3 REMARK 3 2 B 230 B 243 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 356 ; 0.060 ; 0.050 REMARK 3 LOOSE POSITIONAL 2 A (A): 373 ; 0.070 ; 5.000 REMARK 3 TIGHT THERMAL 2 A (A**2): 356 ; 0.110 ; 0.500 REMARK 3 LOOSE THERMAL 2 A (A**2): 373 ; 0.130 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8270 30.2730 -11.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.1279 REMARK 3 T33: 0.1571 T12: -0.0130 REMARK 3 T13: -0.0084 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.8757 L22: 2.4314 REMARK 3 L33: 2.8109 L12: -0.3957 REMARK 3 L13: -0.6525 L23: -0.3799 REMARK 3 S TENSOR REMARK 3 S11: -0.0840 S12: -0.1199 S13: -0.2753 REMARK 3 S21: 0.0604 S22: 0.0709 S23: 0.1727 REMARK 3 S31: 0.3284 S32: 0.0594 S33: 0.0131 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 246 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1770 11.6600 -47.1140 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.0797 REMARK 3 T33: 0.6041 T12: -0.0097 REMARK 3 T13: 0.0065 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 14.0430 L22: 6.4624 REMARK 3 L33: 1.5237 L12: -2.2286 REMARK 3 L13: -2.3518 L23: 0.6376 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.2600 S13: -2.0722 REMARK 3 S21: -0.1773 S22: -0.1441 S23: -0.3347 REMARK 3 S31: 0.0717 S32: -0.0564 S33: 0.1613 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 62.3510 30.4160 -18.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.1449 REMARK 3 T33: 0.1318 T12: 0.0221 REMARK 3 T13: -0.0050 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 4.2501 L22: 2.4192 REMARK 3 L33: 3.3952 L12: 0.3443 REMARK 3 L13: -0.8215 L23: 0.1648 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.2031 S13: -0.2333 REMARK 3 S21: -0.0400 S22: 0.0142 S23: -0.1496 REMARK 3 S31: 0.2693 S32: -0.0727 S33: 0.0200 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 150 B 246 REMARK 3 ORIGIN FOR THE GROUP (A): 69.8910 10.6720 16.0720 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.0106 REMARK 3 T33: 0.1909 T12: -0.0005 REMARK 3 T13: -0.0037 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.9762 L22: 7.7618 REMARK 3 L33: 2.6595 L12: 0.3820 REMARK 3 L13: -0.6833 L23: -1.0236 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: 0.0933 S13: -0.0730 REMARK 3 S21: 0.0752 S22: 0.1800 S23: 0.6796 REMARK 3 S31: 0.1328 S32: -0.1134 S33: -0.1580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3R0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-11. REMARK 100 THE RCSB ID CODE IS RCSB064336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9804, 0.9800, 0.9537 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.8 M AMMONIUM SULFATE, REMARK 280 1.5% PEG 400, 12% 1.2-PROPANEDIOL, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.61400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.12100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.61400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.12100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 THR A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 ASP A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 THR A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 THR A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 142 REMARK 465 ASN A 143 REMARK 465 LYS A 144 REMARK 465 GLU A 145 REMARK 465 PRO A 146 REMARK 465 ARG A 147 REMARK 465 ARG A 247 REMARK 465 GLY B -2 REMARK 465 THR B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 4 REMARK 465 VAL B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 7 REMARK 465 VAL B 8 REMARK 465 THR B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 THR B 12 REMARK 465 PRO B 13 REMARK 465 GLY B 14 REMARK 465 GLU B 15 REMARK 465 ASN B 16 REMARK 465 THR B 17 REMARK 465 GLY B 142 REMARK 465 ASN B 143 REMARK 465 LYS B 144 REMARK 465 GLU B 145 REMARK 465 PRO B 146 REMARK 465 ARG B 147 REMARK 465 ASN B 148 REMARK 465 VAL B 149 REMARK 465 ARG B 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 237 CZ ARG A 237 NH1 0.138 REMARK 500 GLU A 245 CG GLU A 245 CD -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 222 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 222 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 103 33.86 -99.46 REMARK 500 ALA A 154 -121.84 49.03 REMARK 500 HIS A 163 8.92 83.19 REMARK 500 GLU A 229 -134.02 46.75 REMARK 500 VAL A 239 -54.55 -122.33 REMARK 500 ARG B 64 73.30 41.88 REMARK 500 SER B 103 32.78 -97.55 REMARK 500 ALA B 154 -118.13 46.70 REMARK 500 HIS B 163 11.92 81.97 REMARK 500 ASP B 226 60.07 -111.06 REMARK 500 VAL B 239 -56.49 -127.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR B 248 DBREF 3R0J A 1 247 UNP P71814 P71814_MYCTU 1 247 DBREF 3R0J B 1 247 UNP P71814 P71814_MYCTU 1 247 SEQADV 3R0J GLY A -2 UNP P71814 EXPRESSION TAG SEQADV 3R0J THR A -1 UNP P71814 EXPRESSION TAG SEQADV 3R0J HIS A 0 UNP P71814 EXPRESSION TAG SEQADV 3R0J GLY B -2 UNP P71814 EXPRESSION TAG SEQADV 3R0J THR B -1 UNP P71814 EXPRESSION TAG SEQADV 3R0J HIS B 0 UNP P71814 EXPRESSION TAG SEQRES 1 A 250 GLY THR HIS MSE ARG LYS GLY VAL ASP LEU VAL THR ALA SEQRES 2 A 250 GLY THR PRO GLY GLU ASN THR THR PRO GLU ALA ARG VAL SEQRES 3 A 250 LEU VAL VAL ASP ASP GLU ALA ASN ILE VAL GLU LEU LEU SEQRES 4 A 250 SER VAL SER LEU LYS PHE GLN GLY PHE GLU VAL TYR THR SEQRES 5 A 250 ALA THR ASN GLY ALA GLN ALA LEU ASP ARG ALA ARG GLU SEQRES 6 A 250 THR ARG PRO ASP ALA VAL ILE LEU ASP VAL MSO MSE PRO SEQRES 7 A 250 GLY MSE ASP GLY PHE GLY VAL LEU ARG ARG LEU ARG ALA SEQRES 8 A 250 ASP GLY ILE ASP ALA PRO ALA LEU PHE LEU THR ALA ARG SEQRES 9 A 250 ASP SER LEU GLN ASP LYS ILE ALA GLY LEU THR LEU GLY SEQRES 10 A 250 GLY ASP ASP TYR VAL THR LYS PRO PHE SER LEU GLU GLU SEQRES 11 A 250 VAL VAL ALA ARG LEU ARG VAL ILE LEU ARG ARG ALA GLY SEQRES 12 A 250 LYS GLY ASN LYS GLU PRO ARG ASN VAL ARG LEU THR PHE SEQRES 13 A 250 ALA ASP ILE GLU LEU ASP GLU GLU THR HIS GLU VAL TRP SEQRES 14 A 250 LYS ALA GLY GLN PRO VAL SER LEU SER PRO THR GLU PHE SEQRES 15 A 250 THR LEU LEU ARG TYR PHE VAL ILE ASN ALA GLY THR VAL SEQRES 16 A 250 LEU SER LYS PRO LYS ILE LEU ASP HIS VAL TRP ARG TYR SEQRES 17 A 250 ASP PHE GLY GLY ASP VAL ASN VAL VAL GLU SER TYR VAL SEQRES 18 A 250 SER TYR LEU ARG ARG LYS ILE ASP THR GLY GLU LYS ARG SEQRES 19 A 250 LEU LEU HIS THR LEU ARG GLY VAL GLY TYR VAL LEU ARG SEQRES 20 A 250 GLU PRO ARG SEQRES 1 B 250 GLY THR HIS MSE ARG LYS GLY VAL ASP LEU VAL THR ALA SEQRES 2 B 250 GLY THR PRO GLY GLU ASN THR THR PRO GLU ALA ARG VAL SEQRES 3 B 250 LEU VAL VAL ASP ASP GLU ALA ASN ILE VAL GLU LEU LEU SEQRES 4 B 250 SER VAL SER LEU LYS PHE GLN GLY PHE GLU VAL TYR THR SEQRES 5 B 250 ALA THR ASN GLY ALA GLN ALA LEU ASP ARG ALA ARG GLU SEQRES 6 B 250 THR ARG PRO ASP ALA VAL ILE LEU ASP VAL MSO MSE PRO SEQRES 7 B 250 GLY MSE ASP GLY PHE GLY VAL LEU ARG ARG LEU ARG ALA SEQRES 8 B 250 ASP GLY ILE ASP ALA PRO ALA LEU PHE LEU THR ALA ARG SEQRES 9 B 250 ASP SER LEU GLN ASP LYS ILE ALA GLY LEU THR LEU GLY SEQRES 10 B 250 GLY ASP ASP TYR VAL THR LYS PRO PHE SER LEU GLU GLU SEQRES 11 B 250 VAL VAL ALA ARG LEU ARG VAL ILE LEU ARG ARG ALA GLY SEQRES 12 B 250 LYS GLY ASN LYS GLU PRO ARG ASN VAL ARG LEU THR PHE SEQRES 13 B 250 ALA ASP ILE GLU LEU ASP GLU GLU THR HIS GLU VAL TRP SEQRES 14 B 250 LYS ALA GLY GLN PRO VAL SER LEU SER PRO THR GLU PHE SEQRES 15 B 250 THR LEU LEU ARG TYR PHE VAL ILE ASN ALA GLY THR VAL SEQRES 16 B 250 LEU SER LYS PRO LYS ILE LEU ASP HIS VAL TRP ARG TYR SEQRES 17 B 250 ASP PHE GLY GLY ASP VAL ASN VAL VAL GLU SER TYR VAL SEQRES 18 B 250 SER TYR LEU ARG ARG LYS ILE ASP THR GLY GLU LYS ARG SEQRES 19 B 250 LEU LEU HIS THR LEU ARG GLY VAL GLY TYR VAL LEU ARG SEQRES 20 B 250 GLU PRO ARG MODRES 3R0J MSO A 73 MET SELENOMETHIONINE SELENOXIDE MODRES 3R0J MSE A 74 MET SELENOMETHIONINE MODRES 3R0J MSE A 77 MET SELENOMETHIONINE MODRES 3R0J MSO B 73 MET SELENOMETHIONINE SELENOXIDE MODRES 3R0J MSE B 74 MET SELENOMETHIONINE MODRES 3R0J MSE B 77 MET SELENOMETHIONINE HET MSO A 73 9 HET MSE A 74 8 HET MSE A 77 8 HET MSO B 73 9 HET MSE B 74 8 HET MSE B 77 8 HET SO4 A 302 5 HET SO4 A 305 5 HET SO4 B 301 5 HET SO4 B 303 5 HET SO4 B 304 5 HET PGR B 248 5 HETNAM MSO SELENOMETHIONINE SELENOXIDE HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM PGR R-1,2-PROPANEDIOL FORMUL 1 MSO 2(C5 H11 N O3 SE) FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 PGR C3 H8 O2 FORMUL 9 HOH *78(H2 O) HELIX 1 1 GLU A 29 GLN A 43 1 15 HELIX 2 2 ASN A 52 ARG A 64 1 13 HELIX 3 3 ASP A 78 ASP A 89 1 12 HELIX 4 4 SER A 103 THR A 112 1 10 HELIX 5 5 SER A 124 GLY A 140 1 17 HELIX 6 6 SER A 175 ASN A 188 1 14 HELIX 7 7 SER A 194 TRP A 203 1 10 HELIX 8 8 VAL A 211 ASP A 226 1 16 HELIX 9 9 GLU B 29 GLN B 43 1 15 HELIX 10 10 ASN B 52 ARG B 64 1 13 HELIX 11 11 ASP B 78 ASP B 89 1 12 HELIX 12 12 SER B 103 LEU B 113 1 11 HELIX 13 13 SER B 124 GLY B 140 1 17 HELIX 14 14 SER B 175 ASN B 188 1 14 HELIX 15 15 SER B 194 TRP B 203 1 10 HELIX 16 16 VAL B 211 ASP B 226 1 16 SHEET 1 A 5 GLU A 46 ALA A 50 0 SHEET 2 A 5 ARG A 22 VAL A 26 1 N VAL A 23 O GLU A 46 SHEET 3 A 5 ALA A 67 ASP A 71 1 O ILE A 69 N VAL A 26 SHEET 4 A 5 ALA A 95 THR A 99 1 O LEU A 96 N VAL A 68 SHEET 5 A 5 ASP A 117 THR A 120 1 O VAL A 119 N PHE A 97 SHEET 1 B 4 ARG A 150 PHE A 153 0 SHEET 2 B 4 ILE A 156 ASP A 159 -1 O LEU A 158 N LEU A 151 SHEET 3 B 4 VAL A 165 LYS A 167 -1 O TRP A 166 N GLU A 157 SHEET 4 B 4 GLN A 170 VAL A 172 -1 O VAL A 172 N VAL A 165 SHEET 1 C 2 LEU A 233 LEU A 236 0 SHEET 2 C 2 GLY A 240 LEU A 243 -1 O VAL A 242 N HIS A 234 SHEET 1 D 5 GLU B 46 ALA B 50 0 SHEET 2 D 5 ARG B 22 VAL B 26 1 N VAL B 23 O GLU B 46 SHEET 3 D 5 ALA B 67 ASP B 71 1 O ILE B 69 N VAL B 26 SHEET 4 D 5 ALA B 95 THR B 99 1 O LEU B 96 N VAL B 68 SHEET 5 D 5 ASP B 117 THR B 120 1 O VAL B 119 N PHE B 97 SHEET 1 E 4 LEU B 151 PHE B 153 0 SHEET 2 E 4 ILE B 156 LEU B 158 -1 O ILE B 156 N PHE B 153 SHEET 3 E 4 VAL B 165 LYS B 167 -1 O TRP B 166 N GLU B 157 SHEET 4 E 4 GLN B 170 VAL B 172 -1 O VAL B 172 N VAL B 165 SHEET 1 F 2 LEU B 233 LEU B 236 0 SHEET 2 F 2 GLY B 240 LEU B 243 -1 O GLY B 240 N LEU B 236 LINK C VAL A 72 N MSO A 73 1555 1555 1.33 LINK C MSO A 73 N MSE A 74 1555 1555 1.32 LINK C MSE A 74 N PRO A 75 1555 1555 1.34 LINK C GLY A 76 N MSE A 77 1555 1555 1.34 LINK C MSE A 77 N ASP A 78 1555 1555 1.34 LINK C VAL B 72 N MSO B 73 1555 1555 1.34 LINK C MSO B 73 N MSE B 74 1555 1555 1.31 LINK C MSE B 74 N PRO B 75 1555 1555 1.35 LINK C GLY B 76 N MSE B 77 1555 1555 1.33 LINK C MSE B 77 N ASP B 78 1555 1555 1.33 CISPEP 1 LYS A 121 PRO A 122 0 -6.54 CISPEP 2 LYS B 121 PRO B 122 0 -5.22 SITE 1 AC1 4 THR B 180 ARG B 183 ARG B 204 HOH B 260 SITE 1 AC2 3 TYR A 48 THR A 49 ARG A 59 SITE 1 AC3 3 TYR B 48 THR B 49 ARG B 59 SITE 1 AC4 2 SER B 194 ARG B 244 SITE 1 AC5 5 THR A 180 ARG A 183 ARG A 204 HOH A 253 SITE 2 AC5 5 HOH A 287 SITE 1 AC6 3 LYS B 195 ARG B 237 GLY B 238 CRYST1 79.228 138.242 58.906 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012622 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016976 0.00000