HEADER LYASE 08-MAR-11 3R0O TITLE CRYSTAL STRUCTURE OF CARNITINYL-COA HYDRATASE FROM MYCOBACTERIUM AVIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARNITINYL-COA DEHYDRATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CARNITINYL-COA HYDRATASE; COMPND 5 EC: 4.2.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 STRAIN: 104; SOURCE 5 GENE: MAV_2597; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, FATTY ACID BIOSYNTHESIS, FAB, COENZYME KEYWDS 3 A, ORTHOLOG, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3R0O 1 REMARK SEQADV REVDAT 2 22-APR-15 3R0O 1 JRNL VERSN REVDAT 1 16-MAR-11 3R0O 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 52700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2665 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5733 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 564 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.04000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : 1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.188 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5880 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8014 ; 1.327 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 790 ; 5.502 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;36.674 ;23.908 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 876 ;13.479 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;19.126 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 930 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4504 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3898 ; 0.641 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6180 ; 1.174 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1982 ; 2.117 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1830 ; 3.567 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8756 -10.9946 42.2305 REMARK 3 T TENSOR REMARK 3 T11: 0.0257 T22: 0.0268 REMARK 3 T33: 0.0220 T12: 0.0070 REMARK 3 T13: -0.0137 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.6757 L22: 0.5624 REMARK 3 L33: 0.4019 L12: -0.0019 REMARK 3 L13: -0.0913 L23: 0.3054 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.0497 S13: 0.0406 REMARK 3 S21: 0.0980 S22: 0.0026 S23: -0.0222 REMARK 3 S31: 0.0350 S32: -0.0462 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 269 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8536 -13.6048 14.8146 REMARK 3 T TENSOR REMARK 3 T11: 0.0030 T22: 0.0276 REMARK 3 T33: 0.0407 T12: 0.0029 REMARK 3 T13: -0.0040 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.3071 L22: 0.6045 REMARK 3 L33: 0.5274 L12: 0.0839 REMARK 3 L13: -0.0123 L23: 0.1887 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.0325 S13: 0.0246 REMARK 3 S21: -0.0251 S22: 0.0464 S23: -0.0394 REMARK 3 S31: -0.0079 S32: 0.0360 S33: -0.0348 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 269 REMARK 3 ORIGIN FOR THE GROUP (A): -28.6068 -37.0823 20.2532 REMARK 3 T TENSOR REMARK 3 T11: 0.0140 T22: 0.0193 REMARK 3 T33: 0.0438 T12: -0.0017 REMARK 3 T13: -0.0142 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.2980 L22: 0.2575 REMARK 3 L33: 0.5953 L12: 0.1057 REMARK 3 L13: 0.0635 L23: 0.0989 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.0060 S13: -0.0546 REMARK 3 S21: 0.0064 S22: -0.0284 S23: 0.0051 REMARK 3 S31: 0.0679 S32: -0.0333 S33: -0.0152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3R0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3QXI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYAVA.01530.A.A1 PW29034 AT 26.76 REMARK 280 MG/ML AGAINST JCSG+ SCREEN CONDITION D12: 40 MM POTASSIUM REMARK 280 PHOSPHATE MONOBASIC, 15% PEG8000, 20% GLYCEROL, CRYSTAL TRACKING REMARK 280 ID 216675D12, PH 7.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 GLU B 7 REMARK 465 VAL B 8 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 LEU C 5 REMARK 465 THR C 6 REMARK 465 GLU C 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 8 CG1 CG2 REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 PHE A 258 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 GLN A 263 CG CD OE1 NE2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 THR B 9 OG1 CG2 REMARK 470 ARG B 10 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 ARG C 10 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 32 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 55 CG CD OE1 OE2 REMARK 470 LYS C 67 CG CD CE NZ REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 GLU C 196 CG CD OE1 OE2 REMARK 470 PHE C 258 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 261 CG CD CE NZ REMARK 470 GLN C 263 CG CD OE1 NE2 REMARK 470 LYS C 267 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 9 57.12 -67.51 REMARK 500 ASP A 27 66.60 -119.64 REMARK 500 ASN A 36 -169.79 -112.47 REMARK 500 ALA A 95 15.73 49.60 REMARK 500 LEU A 145 -158.91 -116.38 REMARK 500 ALA A 149 40.27 -109.29 REMARK 500 LYS A 261 0.20 57.29 REMARK 500 CYS B 70 123.36 -170.44 REMARK 500 ALA B 95 15.84 57.88 REMARK 500 ALA B 114 59.34 -147.22 REMARK 500 LEU B 145 -167.47 -122.20 REMARK 500 THR C 9 30.23 -90.54 REMARK 500 TYR C 97 -51.84 -125.15 REMARK 500 ALA C 147 91.90 -66.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 271 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYAVA.01530.E RELATED DB: TARGETDB DBREF 3R0O A 1 269 UNP A0QFV0 A0QFV0_MYCA1 1 269 DBREF 3R0O B 1 269 UNP A0QFV0 A0QFV0_MYCA1 1 269 DBREF 3R0O C 1 269 UNP A0QFV0 A0QFV0_MYCA1 1 269 SEQADV 3R0O GLY A -3 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O PRO A -2 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O GLY A -1 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O SER A 0 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O GLY B -3 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O PRO B -2 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O GLY B -1 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O SER B 0 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O GLY C -3 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O PRO C -2 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O GLY C -1 UNP A0QFV0 EXPRESSION TAG SEQADV 3R0O SER C 0 UNP A0QFV0 EXPRESSION TAG SEQRES 1 A 273 GLY PRO GLY SER MET ALA GLU THR LEU THR GLU VAL THR SEQRES 2 A 273 ARG GLN ALA ALA VAL VAL GLU ARG ARG GLY ASN VAL ALA SEQRES 3 A 273 LEU ILE THR ILE ASP ARG PRO ASP ALA ARG ASN ALA VAL SEQRES 4 A 273 ASN GLY ALA VAL SER THR ALA VAL GLY ASP ALA LEU GLU SEQRES 5 A 273 GLU ALA GLN ARG ASP PRO GLU VAL TRP ALA VAL VAL ILE SEQRES 6 A 273 THR GLY ALA GLY ASP LYS SER PHE CYS ALA GLY ALA ASP SEQRES 7 A 273 LEU LYS ALA ILE SER ARG GLY GLU ASN LEU TYR HIS ALA SEQRES 8 A 273 GLU HIS PRO GLU TRP GLY PHE ALA GLY TYR VAL HIS HIS SEQRES 9 A 273 PHE ILE ASP LYS PRO THR ILE ALA ALA VAL ASN GLY THR SEQRES 10 A 273 ALA LEU GLY GLY GLY SER GLU LEU ALA LEU ALA SER ASP SEQRES 11 A 273 LEU VAL ILE ALA CYS GLU SER ALA SER PHE GLY LEU PRO SEQRES 12 A 273 GLU VAL LYS ARG GLY LEU ILE ALA GLY ALA GLY GLY VAL SEQRES 13 A 273 PHE ARG ILE VAL GLU GLN LEU PRO ARG LYS VAL ALA LEU SEQRES 14 A 273 GLU LEU VAL LEU THR GLY GLU PRO MET THR ALA SER ASP SEQRES 15 A 273 ALA LEU ARG TRP GLY LEU ILE ASN GLU VAL VAL PRO ASP SEQRES 16 A 273 GLY THR VAL VAL GLU ALA ALA LEU ALA LEU ALA GLU ARG SEQRES 17 A 273 ILE THR CYS ASN ALA PRO LEU SER VAL GLN ALA SER LYS SEQRES 18 A 273 ARG VAL ALA TYR GLY ALA ASP ASP GLY ILE ILE GLY ALA SEQRES 19 A 273 GLU GLU PRO LYS TRP GLU ARG THR ILE ARG GLU PHE THR SEQRES 20 A 273 GLU LEU LEU LYS SER GLU ASP ALA LYS GLU GLY PRO LEU SEQRES 21 A 273 ALA PHE ALA GLU LYS ARG GLN PRO VAL TRP LYS ALA ARG SEQRES 1 B 273 GLY PRO GLY SER MET ALA GLU THR LEU THR GLU VAL THR SEQRES 2 B 273 ARG GLN ALA ALA VAL VAL GLU ARG ARG GLY ASN VAL ALA SEQRES 3 B 273 LEU ILE THR ILE ASP ARG PRO ASP ALA ARG ASN ALA VAL SEQRES 4 B 273 ASN GLY ALA VAL SER THR ALA VAL GLY ASP ALA LEU GLU SEQRES 5 B 273 GLU ALA GLN ARG ASP PRO GLU VAL TRP ALA VAL VAL ILE SEQRES 6 B 273 THR GLY ALA GLY ASP LYS SER PHE CYS ALA GLY ALA ASP SEQRES 7 B 273 LEU LYS ALA ILE SER ARG GLY GLU ASN LEU TYR HIS ALA SEQRES 8 B 273 GLU HIS PRO GLU TRP GLY PHE ALA GLY TYR VAL HIS HIS SEQRES 9 B 273 PHE ILE ASP LYS PRO THR ILE ALA ALA VAL ASN GLY THR SEQRES 10 B 273 ALA LEU GLY GLY GLY SER GLU LEU ALA LEU ALA SER ASP SEQRES 11 B 273 LEU VAL ILE ALA CYS GLU SER ALA SER PHE GLY LEU PRO SEQRES 12 B 273 GLU VAL LYS ARG GLY LEU ILE ALA GLY ALA GLY GLY VAL SEQRES 13 B 273 PHE ARG ILE VAL GLU GLN LEU PRO ARG LYS VAL ALA LEU SEQRES 14 B 273 GLU LEU VAL LEU THR GLY GLU PRO MET THR ALA SER ASP SEQRES 15 B 273 ALA LEU ARG TRP GLY LEU ILE ASN GLU VAL VAL PRO ASP SEQRES 16 B 273 GLY THR VAL VAL GLU ALA ALA LEU ALA LEU ALA GLU ARG SEQRES 17 B 273 ILE THR CYS ASN ALA PRO LEU SER VAL GLN ALA SER LYS SEQRES 18 B 273 ARG VAL ALA TYR GLY ALA ASP ASP GLY ILE ILE GLY ALA SEQRES 19 B 273 GLU GLU PRO LYS TRP GLU ARG THR ILE ARG GLU PHE THR SEQRES 20 B 273 GLU LEU LEU LYS SER GLU ASP ALA LYS GLU GLY PRO LEU SEQRES 21 B 273 ALA PHE ALA GLU LYS ARG GLN PRO VAL TRP LYS ALA ARG SEQRES 1 C 273 GLY PRO GLY SER MET ALA GLU THR LEU THR GLU VAL THR SEQRES 2 C 273 ARG GLN ALA ALA VAL VAL GLU ARG ARG GLY ASN VAL ALA SEQRES 3 C 273 LEU ILE THR ILE ASP ARG PRO ASP ALA ARG ASN ALA VAL SEQRES 4 C 273 ASN GLY ALA VAL SER THR ALA VAL GLY ASP ALA LEU GLU SEQRES 5 C 273 GLU ALA GLN ARG ASP PRO GLU VAL TRP ALA VAL VAL ILE SEQRES 6 C 273 THR GLY ALA GLY ASP LYS SER PHE CYS ALA GLY ALA ASP SEQRES 7 C 273 LEU LYS ALA ILE SER ARG GLY GLU ASN LEU TYR HIS ALA SEQRES 8 C 273 GLU HIS PRO GLU TRP GLY PHE ALA GLY TYR VAL HIS HIS SEQRES 9 C 273 PHE ILE ASP LYS PRO THR ILE ALA ALA VAL ASN GLY THR SEQRES 10 C 273 ALA LEU GLY GLY GLY SER GLU LEU ALA LEU ALA SER ASP SEQRES 11 C 273 LEU VAL ILE ALA CYS GLU SER ALA SER PHE GLY LEU PRO SEQRES 12 C 273 GLU VAL LYS ARG GLY LEU ILE ALA GLY ALA GLY GLY VAL SEQRES 13 C 273 PHE ARG ILE VAL GLU GLN LEU PRO ARG LYS VAL ALA LEU SEQRES 14 C 273 GLU LEU VAL LEU THR GLY GLU PRO MET THR ALA SER ASP SEQRES 15 C 273 ALA LEU ARG TRP GLY LEU ILE ASN GLU VAL VAL PRO ASP SEQRES 16 C 273 GLY THR VAL VAL GLU ALA ALA LEU ALA LEU ALA GLU ARG SEQRES 17 C 273 ILE THR CYS ASN ALA PRO LEU SER VAL GLN ALA SER LYS SEQRES 18 C 273 ARG VAL ALA TYR GLY ALA ASP ASP GLY ILE ILE GLY ALA SEQRES 19 C 273 GLU GLU PRO LYS TRP GLU ARG THR ILE ARG GLU PHE THR SEQRES 20 C 273 GLU LEU LEU LYS SER GLU ASP ALA LYS GLU GLY PRO LEU SEQRES 21 C 273 ALA PHE ALA GLU LYS ARG GLN PRO VAL TRP LYS ALA ARG HET EDO A 270 4 HET EDO A 271 4 HET EDO B 270 4 HET EDO B 271 4 HET GOL B 272 6 HET EDO C 270 4 HET K C 271 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 EDO 5(C2 H6 O2) FORMUL 8 GOL C3 H8 O3 FORMUL 10 K K 1+ FORMUL 11 HOH *564(H2 O) HELIX 1 1 ARG A 28 ARG A 32 5 5 HELIX 2 2 ASN A 36 ASP A 53 1 18 HELIX 3 3 ASP A 74 ARG A 80 1 7 HELIX 4 4 HIS A 89 TYR A 97 5 9 HELIX 5 5 GLY A 116 SER A 125 1 10 HELIX 6 6 LEU A 138 ARG A 143 5 6 HELIX 7 7 GLY A 150 LEU A 159 1 10 HELIX 8 8 PRO A 160 GLY A 171 1 12 HELIX 9 9 ALA A 176 TRP A 182 1 7 HELIX 10 10 THR A 193 CYS A 207 1 15 HELIX 11 11 ALA A 209 GLY A 222 1 14 HELIX 12 12 GLU A 231 LYS A 247 1 17 HELIX 13 13 SER A 248 ALA A 259 1 12 HELIX 14 14 ARG B 28 ARG B 32 5 5 HELIX 15 15 ASN B 36 ASP B 53 1 18 HELIX 16 16 ASP B 74 ARG B 80 1 7 HELIX 17 17 HIS B 89 TYR B 97 5 9 HELIX 18 18 GLY B 116 SER B 125 1 10 HELIX 19 19 LEU B 138 GLY B 144 5 7 HELIX 20 20 GLY B 150 LEU B 159 1 10 HELIX 21 21 PRO B 160 GLY B 171 1 12 HELIX 22 22 ALA B 176 TRP B 182 1 7 HELIX 23 23 THR B 193 CYS B 207 1 15 HELIX 24 24 ALA B 209 GLY B 222 1 14 HELIX 25 25 GLU B 231 LEU B 246 1 16 HELIX 26 26 SER B 248 GLU B 260 1 13 HELIX 27 27 ARG C 28 ARG C 32 5 5 HELIX 28 28 ASN C 36 ASP C 53 1 18 HELIX 29 29 ASP C 74 ARG C 80 1 7 HELIX 30 30 HIS C 89 TYR C 97 5 9 HELIX 31 31 GLY C 116 SER C 125 1 10 HELIX 32 32 LEU C 138 ARG C 143 5 6 HELIX 33 33 GLY C 150 LEU C 159 1 10 HELIX 34 34 PRO C 160 GLY C 171 1 12 HELIX 35 35 ALA C 176 TRP C 182 1 7 HELIX 36 36 THR C 193 CYS C 207 1 15 HELIX 37 37 ALA C 209 GLY C 222 1 14 HELIX 38 38 GLU C 231 LYS C 247 1 17 HELIX 39 39 GLU C 249 GLU C 260 1 12 SHEET 1 A 6 ALA A 13 ARG A 18 0 SHEET 2 A 6 VAL A 21 ILE A 26 -1 O LEU A 23 N GLU A 16 SHEET 3 A 6 ALA A 58 GLY A 63 1 O VAL A 60 N ILE A 24 SHEET 4 A 6 THR A 106 VAL A 110 1 O ALA A 109 N ILE A 61 SHEET 5 A 6 LEU A 127 CYS A 131 1 O ILE A 129 N VAL A 110 SHEET 6 A 6 GLU A 187 VAL A 189 1 O GLU A 187 N ALA A 130 SHEET 1 B 3 ALA A 114 LEU A 115 0 SHEET 2 B 3 SER A 135 GLY A 137 1 O SER A 135 N ALA A 114 SHEET 3 B 3 MET A 174 THR A 175 -1 O MET A 174 N PHE A 136 SHEET 1 C 2 ALA A 223 ASP A 224 0 SHEET 2 C 2 ILE A 227 ILE A 228 -1 O ILE A 227 N ASP A 224 SHEET 1 D 6 ALA B 13 ARG B 18 0 SHEET 2 D 6 VAL B 21 ILE B 26 -1 O LEU B 23 N GLU B 16 SHEET 3 D 6 ALA B 58 GLY B 63 1 O VAL B 60 N ILE B 24 SHEET 4 D 6 THR B 106 VAL B 110 1 O ALA B 109 N ILE B 61 SHEET 5 D 6 LEU B 127 CYS B 131 1 O ILE B 129 N VAL B 110 SHEET 6 D 6 GLU B 187 VAL B 189 1 O GLU B 187 N ALA B 130 SHEET 1 E 3 ALA B 114 LEU B 115 0 SHEET 2 E 3 SER B 135 GLY B 137 1 O SER B 135 N ALA B 114 SHEET 3 E 3 MET B 174 THR B 175 -1 O MET B 174 N PHE B 136 SHEET 1 F 2 ALA B 223 ASP B 224 0 SHEET 2 F 2 ILE B 227 ILE B 228 -1 O ILE B 227 N ASP B 224 SHEET 1 G 6 ALA C 13 ARG C 18 0 SHEET 2 G 6 VAL C 21 ILE C 26 -1 O LEU C 23 N GLU C 16 SHEET 3 G 6 ALA C 58 GLY C 63 1 O VAL C 60 N ILE C 24 SHEET 4 G 6 THR C 106 VAL C 110 1 O ALA C 109 N ILE C 61 SHEET 5 G 6 LEU C 127 CYS C 131 1 O ILE C 129 N VAL C 110 SHEET 6 G 6 GLU C 187 VAL C 189 1 O GLU C 187 N ALA C 130 SHEET 1 H 3 ALA C 114 LEU C 115 0 SHEET 2 H 3 SER C 135 GLY C 137 1 O SER C 135 N ALA C 114 SHEET 3 H 3 MET C 174 THR C 175 -1 O MET C 174 N PHE C 136 SHEET 1 I 2 ALA C 223 ASP C 224 0 SHEET 2 I 2 ILE C 227 ILE C 228 -1 O ILE C 227 N ASP C 224 SITE 1 AC1 5 TYR A 97 HIS A 100 THR A 106 ALA A 124 SITE 2 AC1 5 HOH A 280 SITE 1 AC2 5 TYR B 97 HIS B 100 THR B 106 ALA B 124 SITE 2 AC2 5 HOH B 300 SITE 1 AC3 7 TYR C 97 HIS C 100 ILE C 102 THR C 106 SITE 2 AC3 7 ALA C 124 HOH C 279 HOH C 311 SITE 1 AC4 5 ASN B 186 GLU B 187 ARG B 204 HOH B 552 SITE 2 AC4 5 GLU C 166 SITE 1 AC5 4 ARG A 181 TRP A 182 ARG B 181 ARG C 181 SITE 1 AC6 8 PHE B 94 GLY B 117 GLU B 120 GLU B 140 SITE 2 AC6 8 ILE B 146 GLY B 148 ALA B 149 PHE B 242 SITE 1 AC7 2 GLU C 120 GLU C 140 CRYST1 78.890 105.610 109.520 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012676 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009131 0.00000