HEADER OXIDOREDUCTASE 10-MAR-11 3R1I TITLE CRYSTAL STRUCTURE OF A SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE FROM TITLE 2 MYCOBACTERIUM MARINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM; SOURCE 3 ORGANISM_TAXID: 216594; SOURCE 4 STRAIN: ATCC BAA-535 / M; SOURCE 5 GENE: MMAR_2849; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, MYCOBACTERIUM, TUBERCULOSIS, WATER KEYWDS 3 CONTAMINANT, WATER BORNE PATHOGEN, OXIDOREDUCTASE, DEHYDROGENASE, KEYWDS 4 NAD, NADP, SDR EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3R1I 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 3R1I 1 JRNL VERSN REVDAT 1 30-MAR-11 3R1I 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 41760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2902 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3645 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : 1.38000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3741 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5097 ; 1.303 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 5.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;41.177 ;24.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 599 ;11.423 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;10.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 613 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2790 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2490 ; 0.675 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3986 ; 1.179 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1251 ; 2.001 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1106 ; 3.323 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5663 16.1259 8.1071 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: 0.0498 REMARK 3 T33: 0.0328 T12: 0.0080 REMARK 3 T13: -0.0185 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 0.4509 L22: 0.3645 REMARK 3 L33: 0.6108 L12: -0.1363 REMARK 3 L13: -0.0571 L23: -0.1016 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: 0.0970 S13: -0.0762 REMARK 3 S21: -0.0492 S22: -0.0238 S23: 0.0039 REMARK 3 S31: 0.0397 S32: -0.1163 S33: 0.0158 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 255 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9742 21.4443 35.0741 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: 0.0530 REMARK 3 T33: 0.0429 T12: 0.0063 REMARK 3 T13: -0.0012 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.4485 L22: 0.0239 REMARK 3 L33: 0.8888 L12: -0.0170 REMARK 3 L13: -0.1081 L23: -0.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: -0.0232 S13: -0.0234 REMARK 3 S21: 0.0146 S22: 0.0006 S23: -0.0152 REMARK 3 S31: -0.0544 S32: -0.1494 S33: 0.0162 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3R1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41849 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3CTM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYMAA.01365.B.A1 PS00949 AT 55 MG/ML REMARK 280 AGAINST JCSF+ SCREEN CONDITION D6, 0.2 M MGCL2, 0.1 M TRIS PH REMARK 280 8.5, 20% PEG 8000 WITH 25% ETHYLENE GLYCOL AS CRYO-PROTECTANT, REMARK 280 CRYSTAL TRACKING ID 220110D6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.26000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.95500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.26000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.95500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.82500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.26000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.95500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.82500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.26000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.95500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -184.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 84.52000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.82500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 256 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 256 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 259 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 261 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 263 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLU B 199 REMARK 465 LEU B 200 REMARK 465 VAL B 201 REMARK 465 GLU B 202 REMARK 465 PRO B 203 REMARK 465 LEU B 204 REMARK 465 ALA B 205 REMARK 465 ASP B 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 46 CG OD1 OD2 REMARK 470 GLN A 49 CG CD OE1 NE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 197 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 102 124.81 -171.10 REMARK 500 ALA A 147 -128.09 -93.87 REMARK 500 SER A 148 153.70 179.02 REMARK 500 ASP A 249 13.81 -142.08 REMARK 500 ALA B 147 -126.96 -94.18 REMARK 500 SER B 148 156.26 179.85 REMARK 500 ASP B 249 16.27 -142.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 256 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 255 OXT REMARK 620 2 HOH A 258 O 89.1 REMARK 620 3 HOH A 259 O 86.8 82.9 REMARK 620 4 HOH A 359 O 99.5 102.2 171.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 256 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 255 OXT REMARK 620 2 HOH B 257 O 88.7 REMARK 620 3 HOH B 261 O 89.6 82.9 REMARK 620 4 HOH B 263 O 94.4 94.7 175.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 257 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYMAA.01365.B RELATED DB: TARGETDB DBREF 3R1I A 1 255 UNP B2HE09 B2HE09_MYCMM 1 255 DBREF 3R1I B 1 255 UNP B2HE09 B2HE09_MYCMM 1 255 SEQADV 3R1I MET A -20 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I ALA A -19 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS A -18 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS A -17 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS A -16 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS A -15 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS A -14 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS A -13 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I MET A -12 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLY A -11 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I THR A -10 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I LEU A -9 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLU A -8 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I ALA A -7 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLN A -6 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I THR A -5 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLN A -4 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLY A -3 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I PRO A -2 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLY A -1 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I SER A 0 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I MET B -20 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I ALA B -19 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS B -18 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS B -17 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS B -16 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS B -15 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS B -14 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I HIS B -13 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I MET B -12 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLY B -11 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I THR B -10 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I LEU B -9 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLU B -8 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I ALA B -7 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLN B -6 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I THR B -5 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLN B -4 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLY B -3 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I PRO B -2 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I GLY B -1 UNP B2HE09 EXPRESSION TAG SEQADV 3R1I SER B 0 UNP B2HE09 EXPRESSION TAG SEQRES 1 A 276 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 276 ALA GLN THR GLN GLY PRO GLY SER MET SER VAL LEU ASP SEQRES 3 A 276 LEU PHE ASP LEU SER GLY LYS ARG ALA LEU ILE THR GLY SEQRES 4 A 276 ALA SER THR GLY ILE GLY LYS LYS VAL ALA LEU ALA TYR SEQRES 5 A 276 ALA GLU ALA GLY ALA GLN VAL ALA VAL ALA ALA ARG HIS SEQRES 6 A 276 SER ASP ALA LEU GLN VAL VAL ALA ASP GLU ILE ALA GLY SEQRES 7 A 276 VAL GLY GLY LYS ALA LEU PRO ILE ARG CYS ASP VAL THR SEQRES 8 A 276 GLN PRO ASP GLN VAL ARG GLY MET LEU ASP GLN MET THR SEQRES 9 A 276 GLY GLU LEU GLY GLY ILE ASP ILE ALA VAL CYS ASN ALA SEQRES 10 A 276 GLY ILE VAL SER VAL GLN ALA MET LEU ASP MET PRO LEU SEQRES 11 A 276 GLU GLU PHE GLN ARG ILE GLN ASP THR ASN VAL THR GLY SEQRES 12 A 276 VAL PHE LEU THR ALA GLN ALA ALA ALA ARG ALA MET VAL SEQRES 13 A 276 ASP GLN GLY LEU GLY GLY THR ILE ILE THR THR ALA SER SEQRES 14 A 276 MET SER GLY HIS ILE ILE ASN ILE PRO GLN GLN VAL SER SEQRES 15 A 276 HIS TYR CYS THR SER LYS ALA ALA VAL VAL HIS LEU THR SEQRES 16 A 276 LYS ALA MET ALA VAL GLU LEU ALA PRO HIS GLN ILE ARG SEQRES 17 A 276 VAL ASN SER VAL SER PRO GLY TYR ILE ARG THR GLU LEU SEQRES 18 A 276 VAL GLU PRO LEU ALA ASP TYR HIS ALA LEU TRP GLU PRO SEQRES 19 A 276 LYS ILE PRO LEU GLY ARG MET GLY ARG PRO GLU GLU LEU SEQRES 20 A 276 THR GLY LEU TYR LEU TYR LEU ALA SER ALA ALA SER SER SEQRES 21 A 276 TYR MET THR GLY SER ASP ILE VAL ILE ASP GLY GLY TYR SEQRES 22 A 276 THR CYS PRO SEQRES 1 B 276 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 276 ALA GLN THR GLN GLY PRO GLY SER MET SER VAL LEU ASP SEQRES 3 B 276 LEU PHE ASP LEU SER GLY LYS ARG ALA LEU ILE THR GLY SEQRES 4 B 276 ALA SER THR GLY ILE GLY LYS LYS VAL ALA LEU ALA TYR SEQRES 5 B 276 ALA GLU ALA GLY ALA GLN VAL ALA VAL ALA ALA ARG HIS SEQRES 6 B 276 SER ASP ALA LEU GLN VAL VAL ALA ASP GLU ILE ALA GLY SEQRES 7 B 276 VAL GLY GLY LYS ALA LEU PRO ILE ARG CYS ASP VAL THR SEQRES 8 B 276 GLN PRO ASP GLN VAL ARG GLY MET LEU ASP GLN MET THR SEQRES 9 B 276 GLY GLU LEU GLY GLY ILE ASP ILE ALA VAL CYS ASN ALA SEQRES 10 B 276 GLY ILE VAL SER VAL GLN ALA MET LEU ASP MET PRO LEU SEQRES 11 B 276 GLU GLU PHE GLN ARG ILE GLN ASP THR ASN VAL THR GLY SEQRES 12 B 276 VAL PHE LEU THR ALA GLN ALA ALA ALA ARG ALA MET VAL SEQRES 13 B 276 ASP GLN GLY LEU GLY GLY THR ILE ILE THR THR ALA SER SEQRES 14 B 276 MET SER GLY HIS ILE ILE ASN ILE PRO GLN GLN VAL SER SEQRES 15 B 276 HIS TYR CYS THR SER LYS ALA ALA VAL VAL HIS LEU THR SEQRES 16 B 276 LYS ALA MET ALA VAL GLU LEU ALA PRO HIS GLN ILE ARG SEQRES 17 B 276 VAL ASN SER VAL SER PRO GLY TYR ILE ARG THR GLU LEU SEQRES 18 B 276 VAL GLU PRO LEU ALA ASP TYR HIS ALA LEU TRP GLU PRO SEQRES 19 B 276 LYS ILE PRO LEU GLY ARG MET GLY ARG PRO GLU GLU LEU SEQRES 20 B 276 THR GLY LEU TYR LEU TYR LEU ALA SER ALA ALA SER SER SEQRES 21 B 276 TYR MET THR GLY SER ASP ILE VAL ILE ASP GLY GLY TYR SEQRES 22 B 276 THR CYS PRO HET MG A 256 1 HET EDO A 257 4 HET MG B 256 1 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MG 2(MG 2+) FORMUL 4 EDO C2 H6 O2 FORMUL 6 HOH *360(H2 O) HELIX 1 1 SER A 2 ASP A 8 5 7 HELIX 2 2 THR A 21 ALA A 34 1 14 HELIX 3 3 HIS A 44 ALA A 47 5 4 HELIX 4 4 LEU A 48 VAL A 58 1 11 HELIX 5 5 GLN A 71 GLY A 87 1 17 HELIX 6 6 ALA A 103 MET A 107 5 5 HELIX 7 7 PRO A 108 VAL A 120 1 13 HELIX 8 8 VAL A 120 GLY A 138 1 19 HELIX 9 9 SER A 148 HIS A 152 5 5 HELIX 10 10 VAL A 160 ALA A 182 1 23 HELIX 11 11 VAL A 201 ASP A 206 5 6 HELIX 12 12 TYR A 207 GLU A 212 1 6 HELIX 13 13 PRO A 213 ILE A 215 5 3 HELIX 14 14 ARG A 222 GLU A 225 5 4 HELIX 15 15 LEU A 226 SER A 235 1 10 HELIX 16 16 ALA A 236 SER A 239 5 4 HELIX 17 17 SER B 2 ASP B 8 5 7 HELIX 18 18 THR B 21 ALA B 34 1 14 HELIX 19 19 HIS B 44 ALA B 47 5 4 HELIX 20 20 LEU B 48 VAL B 58 1 11 HELIX 21 21 GLN B 71 GLY B 87 1 17 HELIX 22 22 ALA B 103 MET B 107 5 5 HELIX 23 23 PRO B 108 VAL B 120 1 13 HELIX 24 24 VAL B 120 GLY B 138 1 19 HELIX 25 25 SER B 148 HIS B 152 5 5 HELIX 26 26 VAL B 160 ALA B 182 1 23 HELIX 27 27 TYR B 207 GLU B 212 1 6 HELIX 28 28 PRO B 213 ILE B 215 5 3 HELIX 29 29 ARG B 222 GLU B 225 5 4 HELIX 30 30 LEU B 226 SER B 235 1 10 HELIX 31 31 ALA B 236 SER B 239 5 4 SHEET 1 A 7 LEU A 63 ARG A 66 0 SHEET 2 A 7 GLN A 37 ALA A 42 1 N VAL A 40 O ILE A 65 SHEET 3 A 7 ARG A 13 THR A 17 1 N ALA A 14 O ALA A 39 SHEET 4 A 7 ILE A 91 CYS A 94 1 O VAL A 93 N LEU A 15 SHEET 5 A 7 GLY A 141 THR A 146 1 O ILE A 144 N CYS A 94 SHEET 6 A 7 ILE A 186 PRO A 193 1 O ARG A 187 N ILE A 143 SHEET 7 A 7 ASP A 245 ILE A 248 1 O ILE A 246 N SER A 192 SHEET 1 B 7 LEU B 63 ARG B 66 0 SHEET 2 B 7 GLN B 37 ALA B 42 1 N VAL B 40 O ILE B 65 SHEET 3 B 7 ARG B 13 ILE B 16 1 N ALA B 14 O ALA B 39 SHEET 4 B 7 ILE B 91 CYS B 94 1 O VAL B 93 N LEU B 15 SHEET 5 B 7 GLY B 141 THR B 146 1 O ILE B 144 N CYS B 94 SHEET 6 B 7 ILE B 186 PRO B 193 1 O ARG B 187 N ILE B 143 SHEET 7 B 7 ASP B 245 ILE B 248 1 O ILE B 246 N SER B 192 LINK OXT PRO A 255 MG MG A 256 1555 1555 2.22 LINK MG MG A 256 O HOH A 258 1555 1555 2.37 LINK MG MG A 256 O HOH A 259 1555 1555 2.28 LINK MG MG A 256 O HOH A 359 1555 1555 1.81 LINK OXT PRO B 255 MG MG B 256 1555 1555 2.15 LINK MG MG B 256 O HOH B 257 1555 1555 2.37 LINK MG MG B 256 O HOH B 261 1555 1555 2.12 LINK MG MG B 256 O HOH B 263 1555 1555 1.86 CISPEP 1 ILE A 156 PRO A 157 0 2.01 CISPEP 2 ILE B 156 PRO B 157 0 0.00 SITE 1 AC1 4 PRO A 255 HOH A 258 HOH A 259 HOH A 359 SITE 1 AC2 4 PRO B 255 HOH B 257 HOH B 261 HOH B 263 SITE 1 AC3 3 GLN A 158 HOH A 309 HOH A 420 CRYST1 84.520 127.910 105.650 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007818 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009465 0.00000