HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-MAR-11 3R1N TITLE MK3 KINASE BOUND TO COMPOUND 5B COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP KINASE-ACTIVATED PROTEIN KINASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 33-349); COMPND 5 SYNONYM: MAPK-ACTIVATED PROTEIN KINASE 3, MAPKAP KINASE 3, MAPKAPK-3, COMPND 6 CHROMOSOME 3P KINASE, 3PK; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPKAPK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRILJ-POPIN KEYWDS KINASE DOMAIN WITH BOUND INHIBITOR, KINASE DOMAIN, KEYWDS 2 PHOSPHOTRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.OUBRIE,B.KAZEMIER REVDAT 4 21-FEB-24 3R1N 1 REMARK REVDAT 3 04-APR-18 3R1N 1 REMARK REVDAT 2 13-JUL-11 3R1N 1 JRNL REVDAT 1 25-MAY-11 3R1N 0 JRNL AUTH T.BARF,A.KAPTEIN,S.WILDE,R.HEIJDEN,R.SOMEREN,D.DEMONT, JRNL AUTH 2 C.SCHULTZ-FADEMRECHT,J.VERSTEEGH,M.ZEELAND,N.SEEGERS, JRNL AUTH 3 B.KAZEMIER,B.KAR,M.HOEK,J.ROOS,H.KLOP,R.SMEETS,C.HOFSTRA, JRNL AUTH 4 J.HORNBERG,A.OUBRIE JRNL TITL STRUCTURE-BASED LEAD IDENTIFICATION OF ATP-COMPETITIVE MK2 JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 21 3818 2011 JRNL REFN ISSN 0960-894X JRNL PMID 21565500 JRNL DOI 10.1016/J.BMCL.2011.04.018 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2328 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1602 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3154 ; 2.000 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3909 ; 1.139 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 7.214 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;32.145 ;24.234 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 418 ;20.456 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2543 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 463 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1376 ; 1.187 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 553 ; 0.301 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2230 ; 2.044 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 952 ; 2.890 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 920 ; 4.225 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9670 12.4340 5.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.0424 T22: 0.2501 REMARK 3 T33: 0.3364 T12: -0.0030 REMARK 3 T13: -0.0179 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.1276 L22: 6.1663 REMARK 3 L33: 6.1492 L12: -0.0939 REMARK 3 L13: -0.0817 L23: -3.5008 REMARK 3 S TENSOR REMARK 3 S11: -0.0958 S12: 0.1646 S13: 0.2511 REMARK 3 S21: 0.2950 S22: -0.0488 S23: -0.7037 REMARK 3 S31: -0.2404 S32: 0.3947 S33: 0.1446 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7860 -0.7980 17.4200 REMARK 3 T TENSOR REMARK 3 T11: 0.0518 T22: 0.1891 REMARK 3 T33: 0.1502 T12: -0.0345 REMARK 3 T13: 0.0273 T23: 0.0788 REMARK 3 L TENSOR REMARK 3 L11: 4.9907 L22: 8.2374 REMARK 3 L33: 5.2886 L12: -0.0877 REMARK 3 L13: -1.5202 L23: 0.3911 REMARK 3 S TENSOR REMARK 3 S11: 0.1613 S12: -0.4983 S13: -0.1472 REMARK 3 S21: 0.5115 S22: -0.0967 S23: 0.3556 REMARK 3 S31: 0.2161 S32: -0.1689 S33: -0.0647 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3060 -8.5880 21.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.2541 T22: 0.3506 REMARK 3 T33: 0.3157 T12: 0.0508 REMARK 3 T13: -0.0597 T23: 0.1068 REMARK 3 L TENSOR REMARK 3 L11: 4.1771 L22: 6.0401 REMARK 3 L33: 15.7619 L12: 1.8231 REMARK 3 L13: 6.3312 L23: -2.8815 REMARK 3 S TENSOR REMARK 3 S11: 0.6317 S12: 0.0013 S13: -0.5763 REMARK 3 S21: 0.9854 S22: -0.3255 S23: -0.7343 REMARK 3 S31: 0.2558 S32: 0.4884 S33: -0.3062 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 343 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4730 -8.8200 27.1750 REMARK 3 T TENSOR REMARK 3 T11: 0.5425 T22: 0.4484 REMARK 3 T33: 0.3632 T12: -0.0226 REMARK 3 T13: -0.1240 T23: 0.1688 REMARK 3 L TENSOR REMARK 3 L11: 3.2127 L22: 4.8395 REMARK 3 L33: 4.4419 L12: 1.3767 REMARK 3 L13: -0.9677 L23: -0.6070 REMARK 3 S TENSOR REMARK 3 S11: 0.2905 S12: -0.8612 S13: -0.3776 REMARK 3 S21: 1.2607 S22: -0.1114 S23: -0.1778 REMARK 3 S31: 0.4930 S32: 0.2133 S33: -0.1792 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3R1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX-HF REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21617 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 45.098 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : 0.51500 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE/BIS-TRIS PROPANE, 12 % REMARK 280 PEG3350, 10 MM DTT, 1 MM COMPOUND 5B, PH 5.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.06500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.06500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 135 REMARK 465 GLN A 136 REMARK 465 GLN A 196 REMARK 465 ASN A 197 REMARK 465 ALA A 198 REMARK 465 LEU A 199 REMARK 465 GLN A 200 REMARK 465 THR A 201 REMARK 465 PRO A 202 REMARK 465 CYS A 203 REMARK 465 TYR A 204 REMARK 465 THR A 205 REMARK 465 PRO A 206 REMARK 465 TYR A 207 REMARK 465 TYR A 208 REMARK 465 VAL A 209 REMARK 465 ALA A 210 REMARK 465 PRO A 211 REMARK 465 GLU A 212 REMARK 465 VAL A 213 REMARK 465 LEU A 214 REMARK 465 GLY A 215 REMARK 465 TYR A 243 REMARK 465 SER A 244 REMARK 465 ASN A 245 REMARK 465 THR A 246 REMARK 465 GLY A 247 REMARK 465 GLN A 248 REMARK 465 ALA A 249 REMARK 465 ILE A 250 REMARK 465 SER A 251 REMARK 465 PRO A 252 REMARK 465 GLY A 253 REMARK 465 MET A 254 REMARK 465 LYS A 255 REMARK 465 ARG A 256 REMARK 465 ARG A 257 REMARK 465 ILE A 258 REMARK 465 ARG A 259 REMARK 465 LEU A 260 REMARK 465 GLY A 261 REMARK 465 GLN A 262 REMARK 465 VAL A 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 33 O HOH A 3 2555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 93 N GLY A 93 CA 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 100 CG1 - CB - CG2 ANGL. DEV. = -24.5 DEGREES REMARK 500 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 47 21.76 -78.30 REMARK 500 SER A 78 154.69 175.79 REMARK 500 SER A 92 -9.91 -54.34 REMARK 500 ARG A 133 -74.50 -164.86 REMARK 500 ASP A 166 36.38 -142.11 REMARK 500 ASP A 187 90.83 78.51 REMARK 500 CYS A 237 -15.57 -148.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 67 GLN A 68 -141.46 REMARK 500 ASP A 347 GLN A 348 140.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 05B A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R2B RELATED DB: PDB REMARK 900 RELATED ID: 3R2Y RELATED DB: PDB REMARK 900 RELATED ID: 3R30 RELATED DB: PDB DBREF 3R1N A 33 349 UNP Q16644 MAPK3_HUMAN 33 349 SEQRES 1 A 317 GLU PRO LYS LYS TYR ALA VAL THR ASP ASP TYR GLN LEU SEQRES 2 A 317 SER LYS GLN VAL LEU GLY LEU GLY VAL ASN GLY LYS VAL SEQRES 3 A 317 LEU GLU CYS PHE HIS ARG ARG THR GLY GLN LYS CYS ALA SEQRES 4 A 317 LEU LYS LEU LEU TYR ASP SER PRO LYS ALA ARG GLN GLU SEQRES 5 A 317 VAL ASP HIS HIS TRP GLN ALA SER GLY GLY PRO HIS ILE SEQRES 6 A 317 VAL CYS ILE LEU ASP VAL TYR GLU ASN MET HIS HIS GLY SEQRES 7 A 317 LYS ARG CYS LEU LEU ILE ILE MET GLU CYS MET GLU GLY SEQRES 8 A 317 GLY GLU LEU PHE SER ARG ILE GLN GLU ARG GLY ASP GLN SEQRES 9 A 317 ALA PHE THR GLU ARG GLU ALA ALA GLU ILE MET ARG ASP SEQRES 10 A 317 ILE GLY THR ALA ILE GLN PHE LEU HIS SER HIS ASN ILE SEQRES 11 A 317 ALA HIS ARG ASP VAL LYS PRO GLU ASN LEU LEU TYR THR SEQRES 12 A 317 SER LYS GLU LYS ASP ALA VAL LEU LYS LEU THR ASP PHE SEQRES 13 A 317 GLY PHE ALA LYS GLU THR THR GLN ASN ALA LEU GLN THR SEQRES 14 A 317 PRO CYS TYR THR PRO TYR TYR VAL ALA PRO GLU VAL LEU SEQRES 15 A 317 GLY PRO GLU LYS TYR ASP LYS SER CYS ASP MET TRP SER SEQRES 16 A 317 LEU GLY VAL ILE MET TYR ILE LEU LEU CYS GLY PHE PRO SEQRES 17 A 317 PRO PHE TYR SER ASN THR GLY GLN ALA ILE SER PRO GLY SEQRES 18 A 317 MET LYS ARG ARG ILE ARG LEU GLY GLN TYR GLY PHE PRO SEQRES 19 A 317 ASN PRO GLU TRP SER GLU VAL SER GLU ASP ALA LYS GLN SEQRES 20 A 317 LEU ILE ARG LEU LEU LEU LYS THR ASP PRO THR GLU ARG SEQRES 21 A 317 LEU THR ILE THR GLN PHE MET ASN HIS PRO TRP ILE ASN SEQRES 22 A 317 GLN SER MET VAL VAL PRO GLN THR PRO LEU HIS THR ALA SEQRES 23 A 317 ARG VAL LEU GLN GLU ASP LYS ASP HIS TRP ASP GLU VAL SEQRES 24 A 317 LYS GLU GLU MET THR SER ALA LEU ALA THR MET ARG VAL SEQRES 25 A 317 ASP TYR ASP GLN VAL HET 05B A 1 30 HETNAM 05B 2'-[2-(1,3-BENZODIOXOL-5-YL)PYRIMIDIN-4-YL]-5',6'- HETNAM 2 05B DIHYDROSPIRO[PIPERIDINE-4,7'-PYRROLO[3,2-C]PYRIDIN]- HETNAM 3 05B 4'(1'H)-ONE FORMUL 2 05B C22 H21 N5 O3 FORMUL 3 HOH *73(H2 O) HELIX 1 1 ALA A 38 ASP A 42 1 5 HELIX 2 2 SER A 78 SER A 92 1 15 HELIX 3 3 LEU A 126 GLU A 132 1 7 HELIX 4 4 THR A 139 HIS A 160 1 22 HELIX 5 5 LYS A 168 GLU A 170 5 3 HELIX 6 6 PRO A 216 GLY A 238 1 23 HELIX 7 7 SER A 274 LEU A 285 1 12 HELIX 8 8 THR A 294 HIS A 301 1 8 HELIX 9 9 HIS A 301 GLN A 306 1 6 HELIX 10 10 HIS A 316 ASP A 324 1 9 HELIX 11 11 HIS A 327 VAL A 344 1 18 SHEET 1 A 5 TYR A 43 LEU A 52 0 SHEET 2 A 5 LYS A 57 HIS A 63 -1 O VAL A 58 N GLY A 51 SHEET 3 A 5 LYS A 69 TYR A 76 -1 O LEU A 72 N LEU A 59 SHEET 4 A 5 LYS A 111 GLU A 119 -1 O LEU A 114 N LEU A 75 SHEET 5 A 5 ILE A 100 HIS A 108 -1 N LEU A 101 O ILE A 117 SHEET 1 B 3 GLY A 124 GLU A 125 0 SHEET 2 B 3 LEU A 172 TYR A 174 -1 O TYR A 174 N GLY A 124 SHEET 3 B 3 LEU A 183 LEU A 185 -1 O LYS A 184 N LEU A 173 SHEET 1 C 2 ILE A 162 ALA A 163 0 SHEET 2 C 2 LYS A 192 GLU A 193 -1 O LYS A 192 N ALA A 163 CISPEP 1 ASN A 267 PRO A 268 0 7.22 SITE 1 AC1 18 HOH A 11 HOH A 14 LEU A 50 GLY A 51 SITE 2 AC1 18 LEU A 52 GLY A 53 VAL A 58 ALA A 71 SITE 3 AC1 18 LYS A 73 GLU A 119 CYS A 120 MET A 121 SITE 4 AC1 18 GLU A 122 GLY A 124 GLU A 170 THR A 186 SITE 5 AC1 18 ASP A 187 HOH A 388 CRYST1 84.130 75.790 61.340 90.00 108.01 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011886 0.000000 0.003864 0.00000 SCALE2 0.000000 0.013194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017143 0.00000