HEADER TRANSCRIPTION/RNA 14-MAR-11 3R2C TITLE CRYSTAL STRUCTURE OF ANTITERMINATION FACTORS NUSB AND NUSE IN COMPLEX TITLE 2 WITH BOXA RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: N UTILIZATION SUBSTANCE PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN NUSB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 30S RIBOSOMAL PROTEIN S10; COMPND 8 CHAIN: J, K; COMPND 9 FRAGMENT: SEE REMARK 999; COMPND 10 SYNONYM: PROTEIN NUSE; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'; COMPND 14 CHAIN: R, S; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: BOXA RNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: AQ_133, NUSB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST42; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 12 ORGANISM_TAXID: 63363; SOURCE 13 GENE: AQ_008, NUSE, RPSJ; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PDEST42; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 22 ORGANISM_TAXID: 63363 KEYWDS CROSS SPECIES NUSB-NUSE-RNA INTERACTION, TRANSCRIPTION ELONGATION, KEYWDS 2 GENE REGULATION, PROTEIN-RNA INTERACTION, TRANSCRIPTION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.STAGNO,X.JI REVDAT 6 13-SEP-23 3R2C 1 REMARK REVDAT 5 30-AUG-23 3R2C 1 AUTHOR JRNL REMARK REVDAT 4 08-NOV-17 3R2C 1 REMARK REVDAT 3 26-JUL-17 3R2C 1 SOURCE REMARK REVDAT 2 05-OCT-11 3R2C 1 JRNL VERSN REVDAT 1 22-JUN-11 3R2C 0 JRNL AUTH J.R.STAGNO,A.S.ALTIERI,M.BUBUNENKO,S.G.TARASOV,J.LI, JRNL AUTH 2 D.L.COURT,R.A.BYRD,X.JI JRNL TITL STRUCTURAL BASIS FOR RNA RECOGNITION BY NUSB AND NUSE IN THE JRNL TITL 2 INITIATION OF TRANSCRIPTION ANTITERMINATION. JRNL REF NUCLEIC ACIDS RES. V. 39 7803 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21652641 JRNL DOI 10.1093/NAR/GKR418 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 42498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6694 - 4.6879 0.99 2918 136 0.1825 0.1801 REMARK 3 2 4.6879 - 3.7222 0.99 2850 165 0.1399 0.1613 REMARK 3 3 3.7222 - 3.2521 0.99 2851 167 0.1625 0.2016 REMARK 3 4 3.2521 - 2.9549 0.99 2829 160 0.1735 0.2217 REMARK 3 5 2.9549 - 2.7432 0.99 2835 138 0.1543 0.1986 REMARK 3 6 2.7432 - 2.5815 0.99 2831 169 0.1610 0.2086 REMARK 3 7 2.5815 - 2.4522 0.98 2796 162 0.1610 0.1981 REMARK 3 8 2.4522 - 2.3455 0.98 2784 151 0.1575 0.2058 REMARK 3 9 2.3455 - 2.2552 0.98 2788 140 0.1514 0.2098 REMARK 3 10 2.2552 - 2.1774 0.97 2791 138 0.1669 0.2057 REMARK 3 11 2.1774 - 2.1093 0.95 2700 138 0.1887 0.2551 REMARK 3 12 2.1093 - 2.0491 0.91 2588 142 0.2154 0.2604 REMARK 3 13 2.0491 - 1.9951 0.86 2466 132 0.2305 0.2523 REMARK 3 14 1.9951 - 1.9464 0.79 2259 124 0.2312 0.2655 REMARK 3 15 1.9464 - 1.9022 0.71 2052 98 0.2580 0.2920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.85 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.96570 REMARK 3 B22 (A**2) : -1.12600 REMARK 3 B33 (A**2) : -2.83970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -6.55460 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4126 REMARK 3 ANGLE : 1.028 5605 REMARK 3 CHIRALITY : 0.061 639 REMARK 3 PLANARITY : 0.005 638 REMARK 3 DIHEDRAL : 15.516 1680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:137) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0473 -24.6932 20.0385 REMARK 3 T TENSOR REMARK 3 T11: 0.0085 T22: 0.0476 REMARK 3 T33: 0.0477 T12: 0.0047 REMARK 3 T13: 0.0220 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.4572 L22: 0.3422 REMARK 3 L33: 0.5644 L12: -0.1150 REMARK 3 L13: 0.2823 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.0127 S13: -0.0171 REMARK 3 S21: -0.0256 S22: 0.0100 S23: 0.0141 REMARK 3 S31: 0.0293 S32: -0.0183 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 1:140) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1246 -18.2885 51.6574 REMARK 3 T TENSOR REMARK 3 T11: 0.0599 T22: 0.0486 REMARK 3 T33: 0.0502 T12: 0.0075 REMARK 3 T13: -0.0150 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.4437 L22: 0.4380 REMARK 3 L33: 0.7587 L12: -0.1779 REMARK 3 L13: 0.2289 L23: 0.1108 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: -0.0360 S13: 0.0080 REMARK 3 S21: -0.0610 S22: 0.0271 S23: 0.0242 REMARK 3 S31: -0.0757 S32: -0.0216 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN J AND RESID 3:82) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8483 -3.3375 24.5805 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.0716 REMARK 3 T33: 0.1002 T12: -0.0204 REMARK 3 T13: -0.0222 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.2007 L22: 0.3114 REMARK 3 L33: 0.2087 L12: -0.0921 REMARK 3 L13: -0.0327 L23: -0.1086 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: 0.0634 S13: 0.0407 REMARK 3 S21: 0.0628 S22: -0.0063 S23: -0.0793 REMARK 3 S31: -0.2237 S32: 0.0094 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN K AND RESID 3:81) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3832 -38.9039 42.1543 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.0872 REMARK 3 T33: 0.1274 T12: 0.0765 REMARK 3 T13: -0.0622 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 0.1337 L22: 0.1151 REMARK 3 L33: 0.2396 L12: 0.1106 REMARK 3 L13: -0.0633 L23: -0.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.1018 S12: 0.0391 S13: -0.0908 REMARK 3 S21: 0.0005 S22: 0.0350 S23: -0.0072 REMARK 3 S31: 0.3082 S32: 0.1870 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN R AND RESID 1:9) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4505 -27.2604 5.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.1181 REMARK 3 T33: 0.0098 T12: 0.0052 REMARK 3 T13: 0.0632 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.0340 L22: 0.0830 REMARK 3 L33: 0.1766 L12: -0.0731 REMARK 3 L13: -0.0244 L23: -0.0929 REMARK 3 S TENSOR REMARK 3 S11: 0.1751 S12: 0.0951 S13: -0.1039 REMARK 3 S21: -0.5796 S22: -0.0625 S23: 0.2348 REMARK 3 S31: 0.0511 S32: 0.0604 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN S AND RESID 1:10) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0264 -15.8545 57.5873 REMARK 3 T TENSOR REMARK 3 T11: 0.1109 T22: 0.1507 REMARK 3 T33: 0.1341 T12: -0.0033 REMARK 3 T13: -0.0039 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.1365 L22: 0.2307 REMARK 3 L33: 0.1403 L12: -0.0065 REMARK 3 L13: 0.2238 L23: -0.1982 REMARK 3 S TENSOR REMARK 3 S11: -0.1428 S12: -0.0332 S13: -0.0074 REMARK 3 S21: 0.0800 S22: 0.0114 S23: -0.1388 REMARK 3 S31: 0.0552 S32: 0.1309 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR 225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42602 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3R2D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 25% PEG8000, PH REMARK 280 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.50400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, J, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, K, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 139 REMARK 465 GLU A 140 REMARK 465 GLU A 141 REMARK 465 LYS A 142 REMARK 465 PRO A 143 REMARK 465 SER A 144 REMARK 465 LEU A 145 REMARK 465 LYS A 146 REMARK 465 SER A 147 REMARK 465 GLU A 148 REMARK 465 SER B 138 REMARK 465 LYS B 139 REMARK 465 GLU B 140 REMARK 465 GLU B 141 REMARK 465 LYS B 142 REMARK 465 PRO B 143 REMARK 465 SER B 144 REMARK 465 LEU B 145 REMARK 465 LYS B 146 REMARK 465 SER B 147 REMARK 465 GLU B 148 REMARK 465 MET J 1 REMARK 465 GLU J 2 REMARK 465 ARG J 82 REMARK 465 GLY J 83 REMARK 465 MET K 1 REMARK 465 GLU K 2 REMARK 465 GLY K 83 REMARK 465 G R 10 REMARK 465 C R 11 REMARK 465 A R 12 REMARK 465 C S 11 REMARK 465 A S 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G R 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 G R 9 C1' N9 C8 N7 C5 C6 O6 REMARK 470 G R 9 N1 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 115 -129.07 -124.82 REMARK 500 ALA B 115 -133.26 -126.73 REMARK 500 PRO K 72 146.86 -37.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG R 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG S 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG S 14 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R2D RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RIBOSOME BINDING LOOP (UNP RESIDUES 47-68) OF CHAINS J AND K REMARK 999 (NUSE) HAS BEEN REPLACED WITH A SERINE (SER47) DBREF 3R2C A 1 148 UNP O66530 NUSB_AQUAE 1 148 DBREF 3R2C B 1 148 UNP O66530 NUSB_AQUAE 1 148 DBREF 3R2C J 1 46 UNP O66430 RS10_AQUAE 1 46 DBREF 3R2C J 48 83 UNP O66430 RS10_AQUAE 69 104 DBREF 3R2C K 1 46 UNP O66430 RS10_AQUAE 1 46 DBREF 3R2C K 48 83 UNP O66430 RS10_AQUAE 69 104 DBREF 3R2C R 1 12 PDB 3R2C 3R2C 1 12 DBREF 3R2C S 1 12 PDB 3R2C 3R2C 1 12 SEQADV 3R2C SER J 47 UNP O66430 SEE REMARK 999 SEQADV 3R2C SER K 47 UNP O66430 SEE REMARK 999 SEQRES 1 A 148 MET ARG TYR ARG LYS GLY ALA ARG ASP THR ALA PHE LEU SEQRES 2 A 148 VAL LEU TYR ARG TRP ASP LEU ARG GLY GLU ASN PRO GLY SEQRES 3 A 148 GLU LEU PHE LYS GLU VAL VAL GLU GLU LYS ASN ILE LYS SEQRES 4 A 148 ASN LYS ASP ALA TYR GLU TYR ALA LYS LYS LEU VAL ASP SEQRES 5 A 148 THR ALA VAL ARG HIS ILE GLU GLU ILE ASP SER ILE ILE SEQRES 6 A 148 GLU LYS HIS LEU LYS GLY TRP SER ILE ASP ARG LEU GLY SEQRES 7 A 148 TYR VAL GLU ARG ASN ALA LEU ARG LEU GLY VAL ALA GLU SEQRES 8 A 148 LEU ILE PHE LEU LYS SER LYS GLU PRO GLY ARG VAL PHE SEQRES 9 A 148 ILE ASP ILE VAL ASP LEU VAL LYS LYS TYR ALA ASP GLU SEQRES 10 A 148 LYS ALA GLY LYS PHE VAL ASN GLY VAL LEU SER ALA ILE SEQRES 11 A 148 TYR LYS ALA TYR ILE THR SER SER LYS GLU GLU LYS PRO SEQRES 12 A 148 SER LEU LYS SER GLU SEQRES 1 B 148 MET ARG TYR ARG LYS GLY ALA ARG ASP THR ALA PHE LEU SEQRES 2 B 148 VAL LEU TYR ARG TRP ASP LEU ARG GLY GLU ASN PRO GLY SEQRES 3 B 148 GLU LEU PHE LYS GLU VAL VAL GLU GLU LYS ASN ILE LYS SEQRES 4 B 148 ASN LYS ASP ALA TYR GLU TYR ALA LYS LYS LEU VAL ASP SEQRES 5 B 148 THR ALA VAL ARG HIS ILE GLU GLU ILE ASP SER ILE ILE SEQRES 6 B 148 GLU LYS HIS LEU LYS GLY TRP SER ILE ASP ARG LEU GLY SEQRES 7 B 148 TYR VAL GLU ARG ASN ALA LEU ARG LEU GLY VAL ALA GLU SEQRES 8 B 148 LEU ILE PHE LEU LYS SER LYS GLU PRO GLY ARG VAL PHE SEQRES 9 B 148 ILE ASP ILE VAL ASP LEU VAL LYS LYS TYR ALA ASP GLU SEQRES 10 B 148 LYS ALA GLY LYS PHE VAL ASN GLY VAL LEU SER ALA ILE SEQRES 11 B 148 TYR LYS ALA TYR ILE THR SER SER LYS GLU GLU LYS PRO SEQRES 12 B 148 SER LEU LYS SER GLU SEQRES 1 J 83 MET GLU GLN GLU LYS ILE ARG ILE LYS LEU ARG ALA TYR SEQRES 2 J 83 ASP HIS ARG LEU LEU ASP GLN SER VAL LYS GLN ILE ILE SEQRES 3 J 83 GLU THR VAL LYS ARG THR GLY GLY VAL VAL LYS GLY PRO SEQRES 4 J 83 ILE PRO LEU PRO THR ARG LYS SER GLU PHE SER ARG ILE SEQRES 5 J 83 LEU ASP ILE ILE ARG PHE THR PRO GLN THR ILE GLU ALA SEQRES 6 J 83 LEU MET GLU ILE SER LEU PRO ALA GLY VAL ASP VAL GLU SEQRES 7 J 83 VAL LYS MET ARG GLY SEQRES 1 K 83 MET GLU GLN GLU LYS ILE ARG ILE LYS LEU ARG ALA TYR SEQRES 2 K 83 ASP HIS ARG LEU LEU ASP GLN SER VAL LYS GLN ILE ILE SEQRES 3 K 83 GLU THR VAL LYS ARG THR GLY GLY VAL VAL LYS GLY PRO SEQRES 4 K 83 ILE PRO LEU PRO THR ARG LYS SER GLU PHE SER ARG ILE SEQRES 5 K 83 LEU ASP ILE ILE ARG PHE THR PRO GLN THR ILE GLU ALA SEQRES 6 K 83 LEU MET GLU ILE SER LEU PRO ALA GLY VAL ASP VAL GLU SEQRES 7 K 83 VAL LYS MET ARG GLY SEQRES 1 R 12 G G C U C C U U G G C A SEQRES 1 S 12 G G C U C C U U G G C A HET PEG A 149 17 HET PEG A 150 17 HET PEG A 151 17 HET PEG A 152 17 HET ACT A 153 7 HET PEG B 149 17 HET PEG B 150 17 HET ACT B 151 7 HET PEG J 84 17 HET PEG R 13 17 HET PEG S 13 17 HET PEG S 14 17 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION FORMUL 7 PEG 10(C4 H10 O3) FORMUL 11 ACT 2(C2 H3 O2 1-) FORMUL 19 HOH *239(H2 O) HELIX 1 1 ARG A 2 GLY A 22 1 21 HELIX 2 2 ASN A 24 ASN A 37 1 14 HELIX 3 3 ASN A 40 HIS A 57 1 18 HELIX 4 4 HIS A 57 LYS A 67 1 11 HELIX 5 5 SER A 73 LEU A 77 5 5 HELIX 6 6 GLY A 78 ILE A 93 1 16 HELIX 7 7 GLU A 99 ALA A 115 1 17 HELIX 8 8 ASP A 116 SER A 138 1 23 HELIX 9 9 ARG B 2 GLY B 22 1 21 HELIX 10 10 ASN B 24 ASN B 37 1 14 HELIX 11 11 ASN B 40 HIS B 57 1 18 HELIX 12 12 HIS B 57 HIS B 68 1 12 HELIX 13 13 SER B 73 LEU B 77 5 5 HELIX 14 14 GLY B 78 ILE B 93 1 16 HELIX 15 15 GLU B 99 ALA B 115 1 17 HELIX 16 16 ASP B 116 SER B 137 1 22 HELIX 17 17 ASP J 14 THR J 32 1 19 HELIX 18 18 THR J 59 GLU J 68 1 10 HELIX 19 19 ASP K 14 THR K 32 1 19 HELIX 20 20 THR K 59 MET K 67 1 9 SHEET 1 A 4 VAL J 35 ARG J 45 0 SHEET 2 A 4 GLU J 48 ARG J 57 -1 O ILE J 52 N ILE J 40 SHEET 3 A 4 ILE J 6 ALA J 12 -1 N ILE J 6 O ILE J 55 SHEET 4 A 4 ASP J 76 LYS J 80 -1 O GLU J 78 N LYS J 9 SHEET 1 B 4 VAL K 35 ARG K 45 0 SHEET 2 B 4 GLU K 48 ARG K 57 -1 O ILE K 52 N ILE K 40 SHEET 3 B 4 ILE K 6 ALA K 12 -1 N ILE K 6 O ILE K 55 SHEET 4 B 4 ASP K 76 LYS K 80 -1 O ASP K 76 N ARG K 11 CISPEP 1 GLY J 38 PRO J 39 0 -0.95 CISPEP 2 GLY K 38 PRO K 39 0 3.95 SITE 1 AC1 1 TRP A 18 SITE 1 AC2 4 GLU A 60 PHE A 94 LYS A 96 HOH A 242 SITE 1 AC3 3 ILE A 38 TYR A 44 ASP B 75 SITE 1 AC4 8 LYS A 5 ASP A 109 LEU A 110 HOH A 156 SITE 2 AC4 8 HOH A 194 HOH A 195 HOH A 209 G S 2 SITE 1 AC5 4 GLU A 27 LYS A 30 HOH A 251 G S 9 SITE 1 AC6 3 GLU B 60 ILE B 93 LYS B 96 SITE 1 AC7 3 TRP B 18 GLY B 22 ARG B 86 SITE 1 AC8 3 MET B 1 ARG B 102 G S 1 SITE 1 AC9 4 SER A 128 LYS A 132 U R 4 C R 6 SITE 1 BC1 7 LYS A 112 HOH A 195 HOH B 206 G R 2 SITE 2 BC1 7 C R 5 G S 2 C S 5 SITE 1 BC2 5 SER B 128 LYS B 132 U S 4 C S 5 SITE 2 BC2 5 C S 6 CRYST1 40.530 113.008 65.763 90.00 102.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024673 0.000000 0.005639 0.00000 SCALE2 0.000000 0.008849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015598 0.00000