data_3R2D # _entry.id 3R2D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3R2D pdb_00003r2d 10.2210/pdb3r2d/pdb NDB NA1021 ? ? RCSB RCSB064401 ? ? WWPDB D_1000064401 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3R2C _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3R2D _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-14 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stagno, J.R.' 1 ? 'Ji, X.' 2 0000-0001-6942-1514 # _citation.id primary _citation.title 'Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 7803 _citation.page_last 7815 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21652641 _citation.pdbx_database_id_DOI 10.1093/nar/gkr418 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stagno, J.R.' 1 ? primary 'Altieri, A.S.' 2 ? primary 'Bubunenko, M.' 3 ? primary 'Tarasov, S.G.' 4 ? primary 'Li, J.' 5 ? primary 'Court, D.L.' 6 ? primary 'Byrd, R.A.' 7 ? primary 'Ji, X.' 8 0000-0001-6942-1514 # _cell.entry_id 3R2D _cell.length_a 76.786 _cell.length_b 79.940 _cell.length_c 106.599 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3R2D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'N utilization substance protein B' 17273.984 2 ? ? ? ? 2 polymer man '30S ribosomal protein S10' 9558.287 2 ? ? 'SEE REMARK 999' ? 3 polymer syn "5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'" 3804.296 2 ? ? ? 'BoxA RNA' 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 5 ? ? ? ? 5 water nat water 18.015 98 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'protein nusB' 2 'protein nusE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MMRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGY VERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEEKPSLKSE ; ;MMRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGY VERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEEKPSLKSE ; A,B ? 2 'polypeptide(L)' no no ;GMEQEKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSEFSRILDIIRFTPQTIEALMEISLPAGVDVEV KMRG ; ;GMEQEKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSEFSRILDIIRFTPQTIEALMEISLPAGVDVEV KMRG ; J,K ? 3 polyribonucleotide no no GGCUCCUUGGCA GGCUCCUUGGCA R,S ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 MET n 1 3 ARG n 1 4 TYR n 1 5 ARG n 1 6 LYS n 1 7 GLY n 1 8 ALA n 1 9 ARG n 1 10 ASP n 1 11 THR n 1 12 ALA n 1 13 PHE n 1 14 LEU n 1 15 VAL n 1 16 LEU n 1 17 TYR n 1 18 ARG n 1 19 TRP n 1 20 ASP n 1 21 LEU n 1 22 ARG n 1 23 GLY n 1 24 GLU n 1 25 ASN n 1 26 PRO n 1 27 GLY n 1 28 GLU n 1 29 LEU n 1 30 PHE n 1 31 LYS n 1 32 GLU n 1 33 VAL n 1 34 VAL n 1 35 GLU n 1 36 GLU n 1 37 LYS n 1 38 ASN n 1 39 ILE n 1 40 LYS n 1 41 ASN n 1 42 LYS n 1 43 ASP n 1 44 ALA n 1 45 TYR n 1 46 GLU n 1 47 TYR n 1 48 ALA n 1 49 LYS n 1 50 LYS n 1 51 LEU n 1 52 VAL n 1 53 ASP n 1 54 THR n 1 55 ALA n 1 56 VAL n 1 57 ARG n 1 58 HIS n 1 59 ILE n 1 60 GLU n 1 61 GLU n 1 62 ILE n 1 63 ASP n 1 64 SER n 1 65 ILE n 1 66 ILE n 1 67 GLU n 1 68 LYS n 1 69 HIS n 1 70 LEU n 1 71 LYS n 1 72 GLY n 1 73 TRP n 1 74 SER n 1 75 ILE n 1 76 ASP n 1 77 ARG n 1 78 LEU n 1 79 GLY n 1 80 TYR n 1 81 VAL n 1 82 GLU n 1 83 ARG n 1 84 ASN n 1 85 ALA n 1 86 LEU n 1 87 ARG n 1 88 LEU n 1 89 GLY n 1 90 VAL n 1 91 ALA n 1 92 GLU n 1 93 LEU n 1 94 ILE n 1 95 PHE n 1 96 LEU n 1 97 LYS n 1 98 SER n 1 99 LYS n 1 100 GLU n 1 101 PRO n 1 102 GLY n 1 103 ARG n 1 104 VAL n 1 105 PHE n 1 106 ILE n 1 107 ASP n 1 108 ILE n 1 109 VAL n 1 110 ASP n 1 111 LEU n 1 112 VAL n 1 113 LYS n 1 114 LYS n 1 115 TYR n 1 116 ALA n 1 117 ASP n 1 118 GLU n 1 119 LYS n 1 120 ALA n 1 121 GLY n 1 122 LYS n 1 123 PHE n 1 124 VAL n 1 125 ASN n 1 126 GLY n 1 127 VAL n 1 128 LEU n 1 129 SER n 1 130 ALA n 1 131 ILE n 1 132 TYR n 1 133 LYS n 1 134 ALA n 1 135 TYR n 1 136 ILE n 1 137 THR n 1 138 SER n 1 139 SER n 1 140 LYS n 1 141 GLU n 1 142 GLU n 1 143 LYS n 1 144 PRO n 1 145 SER n 1 146 LEU n 1 147 LYS n 1 148 SER n 1 149 GLU n 2 1 GLY n 2 2 MET n 2 3 GLU n 2 4 GLN n 2 5 GLU n 2 6 LYS n 2 7 ILE n 2 8 ARG n 2 9 ILE n 2 10 LYS n 2 11 LEU n 2 12 ARG n 2 13 ALA n 2 14 TYR n 2 15 ASP n 2 16 HIS n 2 17 ARG n 2 18 LEU n 2 19 LEU n 2 20 ASP n 2 21 GLN n 2 22 SER n 2 23 VAL n 2 24 LYS n 2 25 GLN n 2 26 ILE n 2 27 ILE n 2 28 GLU n 2 29 THR n 2 30 VAL n 2 31 LYS n 2 32 ARG n 2 33 THR n 2 34 GLY n 2 35 GLY n 2 36 VAL n 2 37 VAL n 2 38 LYS n 2 39 GLY n 2 40 PRO n 2 41 ILE n 2 42 PRO n 2 43 LEU n 2 44 PRO n 2 45 THR n 2 46 ARG n 2 47 LYS n 2 48 SER n 2 49 GLU n 2 50 PHE n 2 51 SER n 2 52 ARG n 2 53 ILE n 2 54 LEU n 2 55 ASP n 2 56 ILE n 2 57 ILE n 2 58 ARG n 2 59 PHE n 2 60 THR n 2 61 PRO n 2 62 GLN n 2 63 THR n 2 64 ILE n 2 65 GLU n 2 66 ALA n 2 67 LEU n 2 68 MET n 2 69 GLU n 2 70 ILE n 2 71 SER n 2 72 LEU n 2 73 PRO n 2 74 ALA n 2 75 GLY n 2 76 VAL n 2 77 ASP n 2 78 VAL n 2 79 GLU n 2 80 VAL n 2 81 LYS n 2 82 MET n 2 83 ARG n 2 84 GLY n 3 1 G n 3 2 G n 3 3 C n 3 4 U n 3 5 C n 3 6 C n 3 7 U n 3 8 U n 3 9 G n 3 10 G n 3 11 C n 3 12 A n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? 'aq_133, nusB' ? ? ? ? ? ? 'Aquifex aeolicus' 63363 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pDest527 ? ? 2 1 sample ? 2 47 ? ? 'aq_008, NUSE, rpsJ' ? ? ? ? ? ? 'Aquifex aeolicus' 63363 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pDest527 ? ? 2 2 sample ? 49 84 ? ? 'aq_008, NUSE, rpsJ' ? ? ? ? ? ? 'Aquifex aeolicus' 63363 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pDest527 ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Aquifex aeolicus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 63363 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP NUSB_AQUAE O66530 1 ;MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGYV ERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEEKPSLKSE ; 1 ? 2 UNP RS10_AQUAE O66430 2 MEQEKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRK 1 ? 3 UNP RS10_AQUAE O66430 2 EFSRILDIIRFTPQTIEALMEISLPAGVDVEVKMRG 69 ? 4 PDB 3R2D 3R2D 3 GGCUCCUUGGCA 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3R2D A 2 ? 149 ? O66530 1 ? 148 ? 1 148 2 1 3R2D B 2 ? 149 ? O66530 1 ? 148 ? 1 148 3 2 3R2D J 2 ? 47 ? O66430 1 ? 46 ? 1 46 4 3 3R2D J 49 ? 84 ? O66430 69 ? 104 ? 48 83 5 2 3R2D K 2 ? 47 ? O66430 1 ? 46 ? 1 46 6 3 3R2D K 49 ? 84 ? O66430 69 ? 104 ? 48 83 7 4 3R2D R 1 ? 12 ? 3R2D 1 ? 12 ? 1 12 8 4 3R2D S 1 ? 12 ? 3R2D 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3R2D MET A 1 ? UNP O66530 ? ? 'expression tag' 0 1 2 3R2D MET B 1 ? UNP O66530 ? ? 'expression tag' 0 2 3 3R2D GLY J 1 ? UNP O66430 ? ? 'expression tag' 0 3 4 3R2D SER J 48 ? UNP O66430 ? ? 'SEE REMARK 999' 47 4 5 3R2D GLY K 1 ? UNP O66430 ? ? 'expression tag' 0 5 6 3R2D SER K 48 ? UNP O66430 ? ? 'SEE REMARK 999' 47 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3R2D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_percent_sol 53.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M diammonium phosphate, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR 225' _diffrn_detector.pdbx_collection_date 2010-02-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength 1.000 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3R2D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.199 _reflns.number_obs 32257 _reflns.number_all ? _reflns.percent_possible_obs 94.700 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.500 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.700 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.200 2.280 94.500 0.542 ? ? 5.500 ? ? ? ? ? ? 1 1 2.280 2.370 94.900 0.391 ? ? 5.600 ? ? ? ? ? ? 2 1 2.370 2.480 94.900 0.240 ? ? 5.700 ? ? ? ? ? ? 3 1 2.480 2.610 94.500 0.177 ? ? 5.900 ? ? ? ? ? ? 4 1 2.610 2.770 94.900 0.127 ? ? 5.900 ? ? ? ? ? ? 5 1 2.770 2.990 96.800 0.089 ? ? 5.900 ? ? ? ? ? ? 6 1 2.990 3.290 98.100 0.072 ? ? 5.800 ? ? ? ? ? ? 7 1 3.290 3.760 98.400 0.066 ? ? 5.800 ? ? ? ? ? ? 8 1 3.760 4.740 92.500 0.047 ? ? 5.600 ? ? ? ? ? ? 9 1 4.740 50.000 87.900 0.033 ? ? 5.500 ? ? ? ? ? ? 10 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3R2D _refine.ls_number_reflns_obs 32201 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.642 _refine.ls_d_res_high 2.199 _refine.ls_percent_reflns_obs 94.63 _refine.ls_R_factor_obs 0.2033 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2013 _refine.ls_R_factor_R_free 0.2390 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.15 _refine.ls_number_reflns_R_free 1659 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 5.8884 _refine.aniso_B[2][2] -5.3617 _refine.aniso_B[3][3] -0.5266 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.336 _refine.solvent_model_param_bsol 58.159 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3D3B' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.33 _refine.pdbx_overall_phase_error 24.49 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3480 _refine_hist.pdbx_number_atoms_nucleic_acid 419 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 4032 _refine_hist.d_res_high 2.199 _refine_hist.d_res_low 33.642 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 4028 'X-RAY DIFFRACTION' ? f_angle_d 0.723 ? ? 5486 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.426 ? ? 1638 'X-RAY DIFFRACTION' ? f_chiral_restr 0.056 ? ? 636 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 614 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.1991 2.2638 2499 0.2732 94.00 0.3573 . . 135 . . . . 'X-RAY DIFFRACTION' . 2.2638 2.3368 2493 0.2598 95.00 0.2993 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.3368 2.4203 2505 0.2258 94.00 0.2884 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.4203 2.5172 2506 0.2359 95.00 0.2801 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.5172 2.6317 2501 0.2176 95.00 0.2868 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.6317 2.7704 2558 0.2269 95.00 0.2885 . . 123 . . . . 'X-RAY DIFFRACTION' . 2.7704 2.9439 2556 0.2230 97.00 0.2633 . . 158 . . . . 'X-RAY DIFFRACTION' . 2.9439 3.1710 2639 0.2183 98.00 0.2781 . . 129 . . . . 'X-RAY DIFFRACTION' . 3.1710 3.4898 2668 0.2130 98.00 0.2762 . . 135 . . . . 'X-RAY DIFFRACTION' . 3.4898 3.9941 2643 0.1874 98.00 0.2362 . . 133 . . . . 'X-RAY DIFFRACTION' . 3.9941 5.0295 2461 0.1648 90.00 0.1916 . . 145 . . . . 'X-RAY DIFFRACTION' . 5.0295 33.6462 2513 0.1967 88.00 0.2069 . . 142 . . . . # _struct.entry_id 3R2D _struct.title 'Crystal Structure of Antitermination Factors NusB and NusE in complex with dsRNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R2D _struct_keywords.text ;cross species NusB-NusE-RNA interaction, transcription elongation, gene regulation, protein-RNA interaction, TRANSCRIPTION-RNA complex ; _struct_keywords.pdbx_keywords TRANSCRIPTION/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? Q N N 5 ? # _struct_biol.id 1 _struct_biol.details 'BIOMOLECULES 1 AND 2 REPRESENT SLIGHTLY DIFFERENT BINDING MODES OF NUSB/NUSE TO DOUBLE-STRANDED RNA' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 3 ? GLY A 23 ? ARG A 2 GLY A 22 1 ? 21 HELX_P HELX_P2 2 ASN A 25 ? ASN A 38 ? ASN A 24 ASN A 37 1 ? 14 HELX_P HELX_P3 3 ASN A 41 ? HIS A 58 ? ASN A 40 HIS A 57 1 ? 18 HELX_P HELX_P4 4 HIS A 58 ? LYS A 68 ? HIS A 57 LYS A 67 1 ? 11 HELX_P HELX_P5 5 HIS A 69 ? LEU A 70 ? HIS A 68 LEU A 69 5 ? 2 HELX_P HELX_P6 6 SER A 74 ? LEU A 78 ? SER A 73 LEU A 77 5 ? 5 HELX_P HELX_P7 7 GLY A 79 ? ILE A 94 ? GLY A 78 ILE A 93 1 ? 16 HELX_P HELX_P8 8 GLU A 100 ? ALA A 116 ? GLU A 99 ALA A 115 1 ? 17 HELX_P HELX_P9 9 ASP A 117 ? TYR A 135 ? ASP A 116 TYR A 134 1 ? 19 HELX_P HELX_P10 10 ARG B 3 ? GLY B 23 ? ARG B 2 GLY B 22 1 ? 21 HELX_P HELX_P11 11 ASN B 25 ? ASN B 38 ? ASN B 24 ASN B 37 1 ? 14 HELX_P HELX_P12 12 ASN B 41 ? HIS B 58 ? ASN B 40 HIS B 57 1 ? 18 HELX_P HELX_P13 13 HIS B 58 ? LYS B 68 ? HIS B 57 LYS B 67 1 ? 11 HELX_P HELX_P14 14 SER B 74 ? LEU B 78 ? SER B 73 LEU B 77 5 ? 5 HELX_P HELX_P15 15 GLY B 79 ? ILE B 94 ? GLY B 78 ILE B 93 1 ? 16 HELX_P HELX_P16 16 GLU B 100 ? ALA B 116 ? GLU B 99 ALA B 115 1 ? 17 HELX_P HELX_P17 17 ASP B 117 ? THR B 137 ? ASP B 116 THR B 136 1 ? 21 HELX_P HELX_P18 18 ASP C 15 ? THR C 33 ? ASP J 14 THR J 32 1 ? 19 HELX_P HELX_P19 19 THR C 60 ? ILE C 70 ? THR J 59 ILE J 69 1 ? 11 HELX_P HELX_P20 20 ASP D 15 ? THR D 33 ? ASP K 14 THR K 32 1 ? 19 HELX_P HELX_P21 21 THR D 60 ? ILE D 70 ? THR K 59 ILE K 69 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? E G 2 N1 ? ? ? 1_555 F C 11 N3 ? ? R G 2 S C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? E G 2 N2 ? ? ? 1_555 F C 11 O2 ? ? R G 2 S C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? E G 2 O6 ? ? ? 1_555 F C 11 N4 ? ? R G 2 S C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? E G 2 O6 ? ? ? 1_555 F A 12 N6 ? ? R G 2 S A 12 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog5 hydrog ? ? E C 5 N3 ? ? ? 1_555 F G 10 N1 ? ? R C 5 S G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? E C 5 N4 ? ? ? 1_555 F G 10 O6 ? ? R C 5 S G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? E C 5 O2 ? ? ? 1_555 F G 10 N2 ? ? R C 5 S G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? E C 6 N3 ? ? ? 1_555 F G 9 N1 ? ? R C 6 S G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? E C 6 N4 ? ? ? 1_555 F G 9 O6 ? ? R C 6 S G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? E C 6 O2 ? ? ? 1_555 F G 9 N2 ? ? R C 6 S G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? E U 7 N3 ? ? ? 1_555 F U 8 O4 ? ? R U 7 S U 8 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? E U 7 O2 ? ? ? 1_555 F U 8 N3 ? ? R U 7 S U 8 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog13 hydrog ? ? E U 8 N3 ? ? ? 1_555 F U 7 O2 ? ? R U 8 S U 7 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog14 hydrog ? ? E U 8 O4 ? ? ? 1_555 F U 7 N3 ? ? R U 8 S U 7 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog15 hydrog ? ? E G 9 N1 ? ? ? 1_555 F C 6 N3 ? ? R G 9 S C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? E G 9 N2 ? ? ? 1_555 F C 6 O2 ? ? R G 9 S C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? E G 9 O6 ? ? ? 1_555 F C 6 N4 ? ? R G 9 S C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? E G 10 N1 ? ? ? 1_555 F C 5 N3 ? ? R G 10 S C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? E G 10 N2 ? ? ? 1_555 F C 5 O2 ? ? R G 10 S C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? E G 10 O6 ? ? ? 1_555 F C 5 N4 ? ? R G 10 S C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 MET 1 A . ? MET 0 A MET 2 A ? MET 1 A 1 -5.82 2 GLY 39 C . ? GLY 38 J PRO 40 C ? PRO 39 J 1 -1.58 3 GLY 39 D . ? GLY 38 K PRO 40 D ? PRO 39 K 1 -3.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 36 ? ARG C 46 ? VAL J 35 ARG J 45 A 2 GLU C 49 ? ARG C 58 ? GLU J 48 ARG J 57 A 3 LYS C 6 ? ALA C 13 ? LYS J 5 ALA J 12 A 4 ASP C 77 ? ARG C 83 ? ASP J 76 ARG J 82 B 1 VAL D 36 ? ARG D 46 ? VAL K 35 ARG K 45 B 2 GLU D 49 ? ARG D 58 ? GLU K 48 ARG K 57 B 3 ILE D 7 ? ALA D 13 ? ILE K 6 ALA K 12 B 4 ASP D 77 ? MET D 82 ? ASP K 76 MET K 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL C 36 ? N VAL J 35 O ARG C 58 ? O ARG J 57 A 2 3 O ILE C 56 ? O ILE J 55 N ILE C 7 ? N ILE J 6 A 3 4 N ARG C 8 ? N ARG J 7 O LYS C 81 ? O LYS J 80 B 1 2 N LYS D 38 ? N LYS K 37 O ASP D 55 ? O ASP K 54 B 2 3 O ILE D 56 ? O ILE K 55 N ILE D 7 ? N ILE K 6 B 3 4 N ARG D 8 ? N ARG K 7 O LYS D 81 ? O LYS K 80 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B PEG 149 ? 2 'BINDING SITE FOR RESIDUE PEG B 149' AC2 Software B PEG 150 ? 4 'BINDING SITE FOR RESIDUE PEG B 150' AC3 Software B PEG 151 ? 2 'BINDING SITE FOR RESIDUE PEG B 151' AC4 Software B PEG 152 ? 1 'BINDING SITE FOR RESIDUE PEG B 152' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TRP B 19 ? TRP B 18 . ? 1_555 ? 2 AC1 2 ASP B 20 ? ASP B 19 . ? 1_555 ? 3 AC2 4 HIS B 58 ? HIS B 57 . ? 1_555 ? 4 AC2 4 PHE B 95 ? PHE B 94 . ? 1_555 ? 5 AC2 4 ARG D 12 ? ARG K 11 . ? 3_645 ? 6 AC2 4 ARG D 46 ? ARG K 45 . ? 3_645 ? 7 AC3 2 GLY B 102 ? GLY B 101 . ? 1_555 ? 8 AC3 2 ILE B 106 ? ILE B 105 . ? 1_555 ? 9 AC4 1 TYR B 45 ? TYR B 44 . ? 1_555 ? # _atom_sites.entry_id 3R2D _atom_sites.fract_transf_matrix[1][1] 0.013023 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012509 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009381 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 ARG 3 2 2 ARG ARG A . n A 1 4 TYR 4 3 3 TYR TYR A . n A 1 5 ARG 5 4 4 ARG ARG A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 THR 11 10 10 THR THR A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 PHE 13 12 12 PHE PHE A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 TYR 17 16 16 TYR TYR A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 TRP 19 18 18 TRP TRP A . n A 1 20 ASP 20 19 19 ASP ASP A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 ASN 25 24 24 ASN ASN A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 GLU 28 27 27 GLU GLU A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 VAL 33 32 32 VAL VAL A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 ASN 38 37 37 ASN ASN A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 ASN 41 40 40 ASN ASN A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 ASP 43 42 42 ASP ASP A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 TYR 45 44 44 TYR TYR A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 TYR 47 46 46 TYR TYR A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 LYS 50 49 49 LYS LYS A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 VAL 52 51 51 VAL VAL A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 THR 54 53 53 THR THR A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 VAL 56 55 55 VAL VAL A . n A 1 57 ARG 57 56 56 ARG ARG A . n A 1 58 HIS 58 57 57 HIS HIS A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 ILE 62 61 61 ILE ILE A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 ILE 65 64 64 ILE ILE A . n A 1 66 ILE 66 65 65 ILE ILE A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 HIS 69 68 68 HIS HIS A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 LYS 71 70 ? ? ? A . n A 1 72 GLY 72 71 ? ? ? A . n A 1 73 TRP 73 72 ? ? ? A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 ILE 75 74 74 ILE ILE A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 ARG 77 76 76 ARG ARG A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 GLY 79 78 78 GLY GLY A . n A 1 80 TYR 80 79 79 TYR TYR A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 ARG 83 82 82 ARG ARG A . n A 1 84 ASN 84 83 83 ASN ASN A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 ARG 87 86 86 ARG ARG A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 GLY 89 88 88 GLY GLY A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 GLU 92 91 91 GLU GLU A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 PHE 95 94 94 PHE PHE A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 LYS 97 96 96 LYS LYS A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 PRO 101 100 100 PRO PRO A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 PHE 105 104 104 PHE PHE A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 ILE 108 107 107 ILE ILE A . n A 1 109 VAL 109 108 108 VAL VAL A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 LYS 113 112 112 LYS LYS A . n A 1 114 LYS 114 113 113 LYS LYS A . n A 1 115 TYR 115 114 114 TYR TYR A . n A 1 116 ALA 116 115 115 ALA ALA A . n A 1 117 ASP 117 116 116 ASP ASP A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 LYS 119 118 118 LYS LYS A . n A 1 120 ALA 120 119 119 ALA ALA A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 LYS 122 121 121 LYS LYS A . n A 1 123 PHE 123 122 122 PHE PHE A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 ASN 125 124 124 ASN ASN A . n A 1 126 GLY 126 125 125 GLY GLY A . n A 1 127 VAL 127 126 126 VAL VAL A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 SER 129 128 128 SER SER A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 ILE 131 130 130 ILE ILE A . n A 1 132 TYR 132 131 131 TYR TYR A . n A 1 133 LYS 133 132 132 LYS LYS A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 TYR 135 134 134 TYR TYR A . n A 1 136 ILE 136 135 ? ? ? A . n A 1 137 THR 137 136 ? ? ? A . n A 1 138 SER 138 137 ? ? ? A . n A 1 139 SER 139 138 ? ? ? A . n A 1 140 LYS 140 139 ? ? ? A . n A 1 141 GLU 141 140 ? ? ? A . n A 1 142 GLU 142 141 ? ? ? A . n A 1 143 LYS 143 142 ? ? ? A . n A 1 144 PRO 144 143 ? ? ? A . n A 1 145 SER 145 144 ? ? ? A . n A 1 146 LEU 146 145 ? ? ? A . n A 1 147 LYS 147 146 ? ? ? A . n A 1 148 SER 148 147 ? ? ? A . n A 1 149 GLU 149 148 ? ? ? A . n B 1 1 MET 1 0 0 MET MET B . n B 1 2 MET 2 1 1 MET MET B . n B 1 3 ARG 3 2 2 ARG ARG B . n B 1 4 TYR 4 3 3 TYR TYR B . n B 1 5 ARG 5 4 4 ARG ARG B . n B 1 6 LYS 6 5 5 LYS LYS B . n B 1 7 GLY 7 6 6 GLY GLY B . n B 1 8 ALA 8 7 7 ALA ALA B . n B 1 9 ARG 9 8 8 ARG ARG B . n B 1 10 ASP 10 9 9 ASP ASP B . n B 1 11 THR 11 10 10 THR THR B . n B 1 12 ALA 12 11 11 ALA ALA B . n B 1 13 PHE 13 12 12 PHE PHE B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 VAL 15 14 14 VAL VAL B . n B 1 16 LEU 16 15 15 LEU LEU B . n B 1 17 TYR 17 16 16 TYR TYR B . n B 1 18 ARG 18 17 17 ARG ARG B . n B 1 19 TRP 19 18 18 TRP TRP B . n B 1 20 ASP 20 19 19 ASP ASP B . n B 1 21 LEU 21 20 20 LEU LEU B . n B 1 22 ARG 22 21 21 ARG ARG B . n B 1 23 GLY 23 22 22 GLY GLY B . n B 1 24 GLU 24 23 23 GLU GLU B . n B 1 25 ASN 25 24 24 ASN ASN B . n B 1 26 PRO 26 25 25 PRO PRO B . n B 1 27 GLY 27 26 26 GLY GLY B . n B 1 28 GLU 28 27 27 GLU GLU B . n B 1 29 LEU 29 28 28 LEU LEU B . n B 1 30 PHE 30 29 29 PHE PHE B . n B 1 31 LYS 31 30 30 LYS LYS B . n B 1 32 GLU 32 31 31 GLU GLU B . n B 1 33 VAL 33 32 32 VAL VAL B . n B 1 34 VAL 34 33 33 VAL VAL B . n B 1 35 GLU 35 34 34 GLU GLU B . n B 1 36 GLU 36 35 35 GLU GLU B . n B 1 37 LYS 37 36 36 LYS LYS B . n B 1 38 ASN 38 37 37 ASN ASN B . n B 1 39 ILE 39 38 38 ILE ILE B . n B 1 40 LYS 40 39 39 LYS LYS B . n B 1 41 ASN 41 40 40 ASN ASN B . n B 1 42 LYS 42 41 41 LYS LYS B . n B 1 43 ASP 43 42 42 ASP ASP B . n B 1 44 ALA 44 43 43 ALA ALA B . n B 1 45 TYR 45 44 44 TYR TYR B . n B 1 46 GLU 46 45 45 GLU GLU B . n B 1 47 TYR 47 46 46 TYR TYR B . n B 1 48 ALA 48 47 47 ALA ALA B . n B 1 49 LYS 49 48 48 LYS LYS B . n B 1 50 LYS 50 49 49 LYS LYS B . n B 1 51 LEU 51 50 50 LEU LEU B . n B 1 52 VAL 52 51 51 VAL VAL B . n B 1 53 ASP 53 52 52 ASP ASP B . n B 1 54 THR 54 53 53 THR THR B . n B 1 55 ALA 55 54 54 ALA ALA B . n B 1 56 VAL 56 55 55 VAL VAL B . n B 1 57 ARG 57 56 56 ARG ARG B . n B 1 58 HIS 58 57 57 HIS HIS B . n B 1 59 ILE 59 58 58 ILE ILE B . n B 1 60 GLU 60 59 59 GLU GLU B . n B 1 61 GLU 61 60 60 GLU GLU B . n B 1 62 ILE 62 61 61 ILE ILE B . n B 1 63 ASP 63 62 62 ASP ASP B . n B 1 64 SER 64 63 63 SER SER B . n B 1 65 ILE 65 64 64 ILE ILE B . n B 1 66 ILE 66 65 65 ILE ILE B . n B 1 67 GLU 67 66 66 GLU GLU B . n B 1 68 LYS 68 67 67 LYS LYS B . n B 1 69 HIS 69 68 68 HIS HIS B . n B 1 70 LEU 70 69 69 LEU LEU B . n B 1 71 LYS 71 70 70 LYS LYS B . n B 1 72 GLY 72 71 71 GLY GLY B . n B 1 73 TRP 73 72 72 TRP TRP B . n B 1 74 SER 74 73 73 SER SER B . n B 1 75 ILE 75 74 74 ILE ILE B . n B 1 76 ASP 76 75 75 ASP ASP B . n B 1 77 ARG 77 76 76 ARG ARG B . n B 1 78 LEU 78 77 77 LEU LEU B . n B 1 79 GLY 79 78 78 GLY GLY B . n B 1 80 TYR 80 79 79 TYR TYR B . n B 1 81 VAL 81 80 80 VAL VAL B . n B 1 82 GLU 82 81 81 GLU GLU B . n B 1 83 ARG 83 82 82 ARG ARG B . n B 1 84 ASN 84 83 83 ASN ASN B . n B 1 85 ALA 85 84 84 ALA ALA B . n B 1 86 LEU 86 85 85 LEU LEU B . n B 1 87 ARG 87 86 86 ARG ARG B . n B 1 88 LEU 88 87 87 LEU LEU B . n B 1 89 GLY 89 88 88 GLY GLY B . n B 1 90 VAL 90 89 89 VAL VAL B . n B 1 91 ALA 91 90 90 ALA ALA B . n B 1 92 GLU 92 91 91 GLU GLU B . n B 1 93 LEU 93 92 92 LEU LEU B . n B 1 94 ILE 94 93 93 ILE ILE B . n B 1 95 PHE 95 94 94 PHE PHE B . n B 1 96 LEU 96 95 95 LEU LEU B . n B 1 97 LYS 97 96 96 LYS LYS B . n B 1 98 SER 98 97 97 SER SER B . n B 1 99 LYS 99 98 98 LYS LYS B . n B 1 100 GLU 100 99 99 GLU GLU B . n B 1 101 PRO 101 100 100 PRO PRO B . n B 1 102 GLY 102 101 101 GLY GLY B . n B 1 103 ARG 103 102 102 ARG ARG B . n B 1 104 VAL 104 103 103 VAL VAL B . n B 1 105 PHE 105 104 104 PHE PHE B . n B 1 106 ILE 106 105 105 ILE ILE B . n B 1 107 ASP 107 106 106 ASP ASP B . n B 1 108 ILE 108 107 107 ILE ILE B . n B 1 109 VAL 109 108 108 VAL VAL B . n B 1 110 ASP 110 109 109 ASP ASP B . n B 1 111 LEU 111 110 110 LEU LEU B . n B 1 112 VAL 112 111 111 VAL VAL B . n B 1 113 LYS 113 112 112 LYS LYS B . n B 1 114 LYS 114 113 113 LYS LYS B . n B 1 115 TYR 115 114 114 TYR TYR B . n B 1 116 ALA 116 115 115 ALA ALA B . n B 1 117 ASP 117 116 116 ASP ASP B . n B 1 118 GLU 118 117 117 GLU GLU B . n B 1 119 LYS 119 118 118 LYS LYS B . n B 1 120 ALA 120 119 119 ALA ALA B . n B 1 121 GLY 121 120 120 GLY GLY B . n B 1 122 LYS 122 121 121 LYS LYS B . n B 1 123 PHE 123 122 122 PHE PHE B . n B 1 124 VAL 124 123 123 VAL VAL B . n B 1 125 ASN 125 124 124 ASN ASN B . n B 1 126 GLY 126 125 125 GLY GLY B . n B 1 127 VAL 127 126 126 VAL VAL B . n B 1 128 LEU 128 127 127 LEU LEU B . n B 1 129 SER 129 128 128 SER SER B . n B 1 130 ALA 130 129 129 ALA ALA B . n B 1 131 ILE 131 130 130 ILE ILE B . n B 1 132 TYR 132 131 131 TYR TYR B . n B 1 133 LYS 133 132 132 LYS LYS B . n B 1 134 ALA 134 133 133 ALA ALA B . n B 1 135 TYR 135 134 134 TYR TYR B . n B 1 136 ILE 136 135 135 ILE ILE B . n B 1 137 THR 137 136 136 THR THR B . n B 1 138 SER 138 137 137 SER SER B . n B 1 139 SER 139 138 ? ? ? B . n B 1 140 LYS 140 139 ? ? ? B . n B 1 141 GLU 141 140 ? ? ? B . n B 1 142 GLU 142 141 ? ? ? B . n B 1 143 LYS 143 142 ? ? ? B . n B 1 144 PRO 144 143 ? ? ? B . n B 1 145 SER 145 144 ? ? ? B . n B 1 146 LEU 146 145 ? ? ? B . n B 1 147 LYS 147 146 ? ? ? B . n B 1 148 SER 148 147 ? ? ? B . n B 1 149 GLU 149 148 ? ? ? B . n C 2 1 GLY 1 0 ? ? ? J . n C 2 2 MET 2 1 ? ? ? J . n C 2 3 GLU 3 2 ? ? ? J . n C 2 4 GLN 4 3 ? ? ? J . n C 2 5 GLU 5 4 4 GLU GLU J . n C 2 6 LYS 6 5 5 LYS LYS J . n C 2 7 ILE 7 6 6 ILE ILE J . n C 2 8 ARG 8 7 7 ARG ARG J . n C 2 9 ILE 9 8 8 ILE ILE J . n C 2 10 LYS 10 9 9 LYS LYS J . n C 2 11 LEU 11 10 10 LEU LEU J . n C 2 12 ARG 12 11 11 ARG ARG J . n C 2 13 ALA 13 12 12 ALA ALA J . n C 2 14 TYR 14 13 13 TYR TYR J . n C 2 15 ASP 15 14 14 ASP ASP J . n C 2 16 HIS 16 15 15 HIS HIS J . n C 2 17 ARG 17 16 16 ARG ARG J . n C 2 18 LEU 18 17 17 LEU LEU J . n C 2 19 LEU 19 18 18 LEU LEU J . n C 2 20 ASP 20 19 19 ASP ASP J . n C 2 21 GLN 21 20 20 GLN GLN J . n C 2 22 SER 22 21 21 SER SER J . n C 2 23 VAL 23 22 22 VAL VAL J . n C 2 24 LYS 24 23 23 LYS LYS J . n C 2 25 GLN 25 24 24 GLN GLN J . n C 2 26 ILE 26 25 25 ILE ILE J . n C 2 27 ILE 27 26 26 ILE ILE J . n C 2 28 GLU 28 27 27 GLU GLU J . n C 2 29 THR 29 28 28 THR THR J . n C 2 30 VAL 30 29 29 VAL VAL J . n C 2 31 LYS 31 30 30 LYS LYS J . n C 2 32 ARG 32 31 31 ARG ARG J . n C 2 33 THR 33 32 32 THR THR J . n C 2 34 GLY 34 33 33 GLY GLY J . n C 2 35 GLY 35 34 34 GLY GLY J . n C 2 36 VAL 36 35 35 VAL VAL J . n C 2 37 VAL 37 36 36 VAL VAL J . n C 2 38 LYS 38 37 37 LYS LYS J . n C 2 39 GLY 39 38 38 GLY GLY J . n C 2 40 PRO 40 39 39 PRO PRO J . n C 2 41 ILE 41 40 40 ILE ILE J . n C 2 42 PRO 42 41 41 PRO PRO J . n C 2 43 LEU 43 42 42 LEU LEU J . n C 2 44 PRO 44 43 43 PRO PRO J . n C 2 45 THR 45 44 44 THR THR J . n C 2 46 ARG 46 45 45 ARG ARG J . n C 2 47 LYS 47 46 46 LYS LYS J . n C 2 48 SER 48 47 47 SER SER J . n C 2 49 GLU 49 48 48 GLU GLU J . n C 2 50 PHE 50 49 49 PHE PHE J . n C 2 51 SER 51 50 50 SER SER J . n C 2 52 ARG 52 51 51 ARG ARG J . n C 2 53 ILE 53 52 52 ILE ILE J . n C 2 54 LEU 54 53 53 LEU LEU J . n C 2 55 ASP 55 54 54 ASP ASP J . n C 2 56 ILE 56 55 55 ILE ILE J . n C 2 57 ILE 57 56 56 ILE ILE J . n C 2 58 ARG 58 57 57 ARG ARG J . n C 2 59 PHE 59 58 58 PHE PHE J . n C 2 60 THR 60 59 59 THR THR J . n C 2 61 PRO 61 60 60 PRO PRO J . n C 2 62 GLN 62 61 61 GLN GLN J . n C 2 63 THR 63 62 62 THR THR J . n C 2 64 ILE 64 63 63 ILE ILE J . n C 2 65 GLU 65 64 64 GLU GLU J . n C 2 66 ALA 66 65 65 ALA ALA J . n C 2 67 LEU 67 66 66 LEU LEU J . n C 2 68 MET 68 67 67 MET MET J . n C 2 69 GLU 69 68 68 GLU GLU J . n C 2 70 ILE 70 69 69 ILE ILE J . n C 2 71 SER 71 70 70 SER SER J . n C 2 72 LEU 72 71 71 LEU LEU J . n C 2 73 PRO 73 72 72 PRO PRO J . n C 2 74 ALA 74 73 73 ALA ALA J . n C 2 75 GLY 75 74 74 GLY GLY J . n C 2 76 VAL 76 75 75 VAL VAL J . n C 2 77 ASP 77 76 76 ASP ASP J . n C 2 78 VAL 78 77 77 VAL VAL J . n C 2 79 GLU 79 78 78 GLU GLU J . n C 2 80 VAL 80 79 79 VAL VAL J . n C 2 81 LYS 81 80 80 LYS LYS J . n C 2 82 MET 82 81 81 MET MET J . n C 2 83 ARG 83 82 82 ARG ARG J . n C 2 84 GLY 84 83 ? ? ? J . n D 2 1 GLY 1 0 ? ? ? K . n D 2 2 MET 2 1 ? ? ? K . n D 2 3 GLU 3 2 ? ? ? K . n D 2 4 GLN 4 3 ? ? ? K . n D 2 5 GLU 5 4 4 GLU GLU K . n D 2 6 LYS 6 5 5 LYS LYS K . n D 2 7 ILE 7 6 6 ILE ILE K . n D 2 8 ARG 8 7 7 ARG ARG K . n D 2 9 ILE 9 8 8 ILE ILE K . n D 2 10 LYS 10 9 9 LYS LYS K . n D 2 11 LEU 11 10 10 LEU LEU K . n D 2 12 ARG 12 11 11 ARG ARG K . n D 2 13 ALA 13 12 12 ALA ALA K . n D 2 14 TYR 14 13 13 TYR TYR K . n D 2 15 ASP 15 14 14 ASP ASP K . n D 2 16 HIS 16 15 15 HIS HIS K . n D 2 17 ARG 17 16 16 ARG ARG K . n D 2 18 LEU 18 17 17 LEU LEU K . n D 2 19 LEU 19 18 18 LEU LEU K . n D 2 20 ASP 20 19 19 ASP ASP K . n D 2 21 GLN 21 20 20 GLN GLN K . n D 2 22 SER 22 21 21 SER SER K . n D 2 23 VAL 23 22 22 VAL VAL K . n D 2 24 LYS 24 23 23 LYS LYS K . n D 2 25 GLN 25 24 24 GLN GLN K . n D 2 26 ILE 26 25 25 ILE ILE K . n D 2 27 ILE 27 26 26 ILE ILE K . n D 2 28 GLU 28 27 27 GLU GLU K . n D 2 29 THR 29 28 28 THR THR K . n D 2 30 VAL 30 29 29 VAL VAL K . n D 2 31 LYS 31 30 30 LYS LYS K . n D 2 32 ARG 32 31 31 ARG ARG K . n D 2 33 THR 33 32 32 THR THR K . n D 2 34 GLY 34 33 33 GLY GLY K . n D 2 35 GLY 35 34 34 GLY GLY K . n D 2 36 VAL 36 35 35 VAL VAL K . n D 2 37 VAL 37 36 36 VAL VAL K . n D 2 38 LYS 38 37 37 LYS LYS K . n D 2 39 GLY 39 38 38 GLY GLY K . n D 2 40 PRO 40 39 39 PRO PRO K . n D 2 41 ILE 41 40 40 ILE ILE K . n D 2 42 PRO 42 41 41 PRO PRO K . n D 2 43 LEU 43 42 42 LEU LEU K . n D 2 44 PRO 44 43 43 PRO PRO K . n D 2 45 THR 45 44 44 THR THR K . n D 2 46 ARG 46 45 45 ARG ARG K . n D 2 47 LYS 47 46 46 LYS LYS K . n D 2 48 SER 48 47 47 SER SER K . n D 2 49 GLU 49 48 48 GLU GLU K . n D 2 50 PHE 50 49 49 PHE PHE K . n D 2 51 SER 51 50 50 SER SER K . n D 2 52 ARG 52 51 51 ARG ARG K . n D 2 53 ILE 53 52 52 ILE ILE K . n D 2 54 LEU 54 53 53 LEU LEU K . n D 2 55 ASP 55 54 54 ASP ASP K . n D 2 56 ILE 56 55 55 ILE ILE K . n D 2 57 ILE 57 56 56 ILE ILE K . n D 2 58 ARG 58 57 57 ARG ARG K . n D 2 59 PHE 59 58 58 PHE PHE K . n D 2 60 THR 60 59 59 THR THR K . n D 2 61 PRO 61 60 60 PRO PRO K . n D 2 62 GLN 62 61 61 GLN GLN K . n D 2 63 THR 63 62 62 THR THR K . n D 2 64 ILE 64 63 63 ILE ILE K . n D 2 65 GLU 65 64 64 GLU GLU K . n D 2 66 ALA 66 65 65 ALA ALA K . n D 2 67 LEU 67 66 66 LEU LEU K . n D 2 68 MET 68 67 67 MET MET K . n D 2 69 GLU 69 68 68 GLU GLU K . n D 2 70 ILE 70 69 69 ILE ILE K . n D 2 71 SER 71 70 70 SER SER K . n D 2 72 LEU 72 71 71 LEU LEU K . n D 2 73 PRO 73 72 72 PRO PRO K . n D 2 74 ALA 74 73 73 ALA ALA K . n D 2 75 GLY 75 74 74 GLY GLY K . n D 2 76 VAL 76 75 75 VAL VAL K . n D 2 77 ASP 77 76 76 ASP ASP K . n D 2 78 VAL 78 77 77 VAL VAL K . n D 2 79 GLU 79 78 78 GLU GLU K . n D 2 80 VAL 80 79 79 VAL VAL K . n D 2 81 LYS 81 80 80 LYS LYS K . n D 2 82 MET 82 81 81 MET MET K . n D 2 83 ARG 83 82 82 ARG ARG K . n D 2 84 GLY 84 83 ? ? ? K . n E 3 1 G 1 1 1 G G R . n E 3 2 G 2 2 2 G G R . n E 3 3 C 3 3 3 C C R . n E 3 4 U 4 4 4 U U R . n E 3 5 C 5 5 5 C C R . n E 3 6 C 6 6 6 C C R . n E 3 7 U 7 7 7 U U R . n E 3 8 U 8 8 8 U U R . n E 3 9 G 9 9 9 G G R . n E 3 10 G 10 10 10 G G R . n E 3 11 C 11 11 11 C C R . n E 3 12 A 12 12 12 A A R . n F 3 1 G 1 1 ? ? ? S . n F 3 2 G 2 2 ? ? ? S . n F 3 3 C 3 3 ? ? ? S . n F 3 4 U 4 4 ? ? ? S . n F 3 5 C 5 5 5 C C S . n F 3 6 C 6 6 6 C C S . n F 3 7 U 7 7 7 U U S . n F 3 8 U 8 8 8 U U S . n F 3 9 G 9 9 9 G G S . n F 3 10 G 10 10 10 G G S . n F 3 11 C 11 11 11 C C S . n F 3 12 A 12 12 12 A A S . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 PEG 1 149 2 PEG PEG A . H 4 PEG 1 149 1 PEG PEG B . I 4 PEG 1 150 3 PEG PEG B . J 4 PEG 1 151 4 PEG PEG B . K 4 PEG 1 152 5 PEG PEG B . L 5 HOH 1 150 3 HOH HOH A . L 5 HOH 2 151 6 HOH HOH A . L 5 HOH 3 152 14 HOH HOH A . L 5 HOH 4 153 16 HOH HOH A . L 5 HOH 5 154 23 HOH HOH A . L 5 HOH 6 155 26 HOH HOH A . L 5 HOH 7 156 28 HOH HOH A . L 5 HOH 8 157 36 HOH HOH A . L 5 HOH 9 158 37 HOH HOH A . L 5 HOH 10 159 38 HOH HOH A . L 5 HOH 11 160 39 HOH HOH A . L 5 HOH 12 161 40 HOH HOH A . L 5 HOH 13 162 54 HOH HOH A . L 5 HOH 14 163 55 HOH HOH A . L 5 HOH 15 164 56 HOH HOH A . L 5 HOH 16 165 70 HOH HOH A . L 5 HOH 17 166 77 HOH HOH A . L 5 HOH 18 167 78 HOH HOH A . L 5 HOH 19 168 79 HOH HOH A . L 5 HOH 20 169 81 HOH HOH A . L 5 HOH 21 170 82 HOH HOH A . L 5 HOH 22 171 83 HOH HOH A . L 5 HOH 23 172 84 HOH HOH A . L 5 HOH 24 173 91 HOH HOH A . M 5 HOH 1 153 2 HOH HOH B . M 5 HOH 2 154 4 HOH HOH B . M 5 HOH 3 155 10 HOH HOH B . M 5 HOH 4 156 12 HOH HOH B . M 5 HOH 5 157 13 HOH HOH B . M 5 HOH 6 158 17 HOH HOH B . M 5 HOH 7 159 20 HOH HOH B . M 5 HOH 8 160 35 HOH HOH B . M 5 HOH 9 161 43 HOH HOH B . M 5 HOH 10 162 44 HOH HOH B . M 5 HOH 11 163 45 HOH HOH B . M 5 HOH 12 164 46 HOH HOH B . M 5 HOH 13 165 47 HOH HOH B . M 5 HOH 14 166 49 HOH HOH B . M 5 HOH 15 167 52 HOH HOH B . M 5 HOH 16 168 59 HOH HOH B . M 5 HOH 17 169 60 HOH HOH B . M 5 HOH 18 170 61 HOH HOH B . M 5 HOH 19 171 62 HOH HOH B . M 5 HOH 20 172 63 HOH HOH B . M 5 HOH 21 173 68 HOH HOH B . M 5 HOH 22 174 71 HOH HOH B . M 5 HOH 23 175 75 HOH HOH B . M 5 HOH 24 176 86 HOH HOH B . M 5 HOH 25 177 87 HOH HOH B . M 5 HOH 26 178 90 HOH HOH B . M 5 HOH 27 179 94 HOH HOH B . M 5 HOH 28 180 97 HOH HOH B . M 5 HOH 29 181 18 HOH HOH B . N 5 HOH 1 84 7 HOH HOH J . N 5 HOH 2 85 85 HOH HOH J . N 5 HOH 3 86 27 HOH HOH J . N 5 HOH 4 87 31 HOH HOH J . N 5 HOH 5 88 41 HOH HOH J . N 5 HOH 6 89 42 HOH HOH J . N 5 HOH 7 90 50 HOH HOH J . N 5 HOH 8 91 51 HOH HOH J . N 5 HOH 9 92 74 HOH HOH J . O 5 HOH 1 84 9 HOH HOH K . O 5 HOH 2 85 19 HOH HOH K . O 5 HOH 3 86 25 HOH HOH K . O 5 HOH 4 87 30 HOH HOH K . O 5 HOH 5 88 88 HOH HOH K . O 5 HOH 6 89 89 HOH HOH K . O 5 HOH 7 90 33 HOH HOH K . O 5 HOH 8 91 48 HOH HOH K . O 5 HOH 9 92 53 HOH HOH K . O 5 HOH 10 93 64 HOH HOH K . O 5 HOH 11 94 65 HOH HOH K . O 5 HOH 12 95 66 HOH HOH K . O 5 HOH 13 96 73 HOH HOH K . O 5 HOH 14 98 98 HOH HOH K . P 5 HOH 1 76 76 HOH HOH R . P 5 HOH 2 80 80 HOH HOH R . P 5 HOH 3 95 95 HOH HOH R . P 5 HOH 4 96 96 HOH HOH R . Q 5 HOH 1 13 1 HOH HOH S . Q 5 HOH 2 14 5 HOH HOH S . Q 5 HOH 3 15 15 HOH HOH S . Q 5 HOH 4 16 8 HOH HOH S . Q 5 HOH 5 17 11 HOH HOH S . Q 5 HOH 6 21 21 HOH HOH S . Q 5 HOH 7 22 22 HOH HOH S . Q 5 HOH 8 24 24 HOH HOH S . Q 5 HOH 9 29 29 HOH HOH S . Q 5 HOH 10 32 32 HOH HOH S . Q 5 HOH 11 34 34 HOH HOH S . Q 5 HOH 12 57 57 HOH HOH S . Q 5 HOH 13 58 58 HOH HOH S . Q 5 HOH 14 67 67 HOH HOH S . Q 5 HOH 15 69 69 HOH HOH S . Q 5 HOH 16 72 72 HOH HOH S . Q 5 HOH 17 92 92 HOH HOH S . Q 5 HOH 18 93 93 HOH HOH S . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F,G,L,N,P,Q 2 1 B,D,E,F,H,I,J,K,M,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-10-05 4 'Structure model' 1 3 2017-07-26 5 'Structure model' 1 4 2017-11-08 6 'Structure model' 1 5 2023-08-30 7 'Structure model' 1 6 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 4 'Structure model' 'Source and taxonomy' 6 5 'Structure model' 'Refinement description' 7 6 'Structure model' Advisory 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Derived calculations' 11 6 'Structure model' 'Structure summary' 12 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' pdbx_unobs_or_zero_occ_residues 3 4 'Structure model' software 4 5 'Structure model' software 5 6 'Structure model' audit_author 6 6 'Structure model' chem_comp_atom 7 6 'Structure model' chem_comp_bond 8 6 'Structure model' citation_author 9 6 'Structure model' database_2 10 6 'Structure model' pdbx_unobs_or_zero_occ_residues 11 6 'Structure model' struct_ref_seq_dif 12 6 'Structure model' struct_site 13 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_audit_author.identifier_ORCID' 2 6 'Structure model' '_citation_author.identifier_ORCID' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_ref_seq_dif.details' 6 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 36.2196 6.3249 -6.4400 0.4396 0.4561 0.4123 0.1096 -0.1445 0.0440 4.3722 4.5761 5.9521 -0.6639 2.3120 -1.8486 0.5217 0.1250 -0.7070 -0.2322 -0.0871 0.0611 0.8666 0.2541 -0.0003 'X-RAY DIFFRACTION' 2 ? refined 44.3133 25.1322 30.0477 0.4044 0.3243 0.3477 -0.0041 0.0095 -0.0011 3.8932 5.0638 3.0538 -0.7649 -0.0956 0.2322 0.0202 -0.1689 0.1546 0.3872 -0.1390 -0.3442 0.0060 0.2295 -0.0000 'X-RAY DIFFRACTION' 3 ? refined 27.2362 26.7596 -12.6640 0.4100 0.6543 0.4401 0.0998 -0.0794 0.0569 3.6498 3.4486 2.5272 -1.2496 1.5787 -0.9818 -0.4653 -0.1442 0.4446 0.0918 0.1083 -0.1946 -0.3812 -0.2332 0.0001 'X-RAY DIFFRACTION' 4 ? refined 25.2682 38.8954 32.6479 0.5285 0.3594 0.5926 -0.0687 0.1729 -0.1211 2.9719 3.0937 3.3802 -1.7373 -0.9204 -0.9779 0.1762 -0.1047 0.0794 0.3382 -0.1187 0.4038 -0.0604 -0.1445 -0.0002 'X-RAY DIFFRACTION' 5 ? refined 41.2648 32.0214 6.2397 1.1271 0.8025 1.1176 0.2045 -0.2677 -0.0333 0.6669 1.6808 1.5760 0.8061 0.0130 -1.0909 -1.8474 0.0151 3.2966 0.2521 0.7603 -0.1861 -1.2690 0.4263 0.0009 'X-RAY DIFFRACTION' 6 ? refined 41.0147 24.4569 7.8162 0.6775 0.6067 0.5950 0.0615 -0.0290 0.0460 0.1585 -0.0945 0.5109 -0.1633 0.1010 0.0537 -0.0002 0.3966 0.5763 -0.1041 -0.1949 -0.1761 -0.7018 0.3595 0.0004 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain B' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'chain J' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'chain K' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? 'chain R' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? 'chain S' # _pdbx_phasing_MR.entry_id 3R2D _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 55.840 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 38.170 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 38.170 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.1.1 'Thu Nov 22 16:35:27 2007' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.6.4_486 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 SERGUI . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_entry_details.entry_id 3R2D _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE RIBOSOME BINDING LOOP (UNP RESIDUES 47-68) OF CHAINS J AND K (NUSE) HAS BEEN REPLACED WITH A SERINE (SER47)' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 115 ? ? -128.51 -130.33 2 1 MET B 1 ? ? 76.69 47.41 3 1 ALA B 115 ? ? -122.79 -117.88 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 70 ? A LYS 71 2 1 Y 1 A GLY 71 ? A GLY 72 3 1 Y 1 A TRP 72 ? A TRP 73 4 1 Y 1 A ILE 135 ? A ILE 136 5 1 Y 1 A THR 136 ? A THR 137 6 1 Y 1 A SER 137 ? A SER 138 7 1 Y 1 A SER 138 ? A SER 139 8 1 Y 1 A LYS 139 ? A LYS 140 9 1 Y 1 A GLU 140 ? A GLU 141 10 1 Y 1 A GLU 141 ? A GLU 142 11 1 Y 1 A LYS 142 ? A LYS 143 12 1 Y 1 A PRO 143 ? A PRO 144 13 1 Y 1 A SER 144 ? A SER 145 14 1 Y 1 A LEU 145 ? A LEU 146 15 1 Y 1 A LYS 146 ? A LYS 147 16 1 Y 1 A SER 147 ? A SER 148 17 1 Y 1 A GLU 148 ? A GLU 149 18 1 Y 1 B SER 138 ? B SER 139 19 1 Y 1 B LYS 139 ? B LYS 140 20 1 Y 1 B GLU 140 ? B GLU 141 21 1 Y 1 B GLU 141 ? B GLU 142 22 1 Y 1 B LYS 142 ? B LYS 143 23 1 Y 1 B PRO 143 ? B PRO 144 24 1 Y 1 B SER 144 ? B SER 145 25 1 Y 1 B LEU 145 ? B LEU 146 26 1 Y 1 B LYS 146 ? B LYS 147 27 1 Y 1 B SER 147 ? B SER 148 28 1 Y 1 B GLU 148 ? B GLU 149 29 1 Y 1 J GLY 0 ? C GLY 1 30 1 Y 1 J MET 1 ? C MET 2 31 1 Y 1 J GLU 2 ? C GLU 3 32 1 Y 1 J GLN 3 ? C GLN 4 33 1 Y 1 J GLY 83 ? C GLY 84 34 1 Y 1 K GLY 0 ? D GLY 1 35 1 Y 1 K MET 1 ? D MET 2 36 1 Y 1 K GLU 2 ? D GLU 3 37 1 Y 1 K GLN 3 ? D GLN 4 38 1 Y 1 K GLY 83 ? D GLY 84 39 1 Y 0 R C 3 ? E C 3 40 1 Y 1 S G 1 ? F G 1 41 1 Y 1 S G 2 ? F G 2 42 1 Y 1 S C 3 ? F C 3 43 1 Y 1 S U 4 ? F U 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 HOH O O N N 254 HOH H1 H N N 255 HOH H2 H N N 256 ILE N N N N 257 ILE CA C N S 258 ILE C C N N 259 ILE O O N N 260 ILE CB C N S 261 ILE CG1 C N N 262 ILE CG2 C N N 263 ILE CD1 C N N 264 ILE OXT O N N 265 ILE H H N N 266 ILE H2 H N N 267 ILE HA H N N 268 ILE HB H N N 269 ILE HG12 H N N 270 ILE HG13 H N N 271 ILE HG21 H N N 272 ILE HG22 H N N 273 ILE HG23 H N N 274 ILE HD11 H N N 275 ILE HD12 H N N 276 ILE HD13 H N N 277 ILE HXT H N N 278 LEU N N N N 279 LEU CA C N S 280 LEU C C N N 281 LEU O O N N 282 LEU CB C N N 283 LEU CG C N N 284 LEU CD1 C N N 285 LEU CD2 C N N 286 LEU OXT O N N 287 LEU H H N N 288 LEU H2 H N N 289 LEU HA H N N 290 LEU HB2 H N N 291 LEU HB3 H N N 292 LEU HG H N N 293 LEU HD11 H N N 294 LEU HD12 H N N 295 LEU HD13 H N N 296 LEU HD21 H N N 297 LEU HD22 H N N 298 LEU HD23 H N N 299 LEU HXT H N N 300 LYS N N N N 301 LYS CA C N S 302 LYS C C N N 303 LYS O O N N 304 LYS CB C N N 305 LYS CG C N N 306 LYS CD C N N 307 LYS CE C N N 308 LYS NZ N N N 309 LYS OXT O N N 310 LYS H H N N 311 LYS H2 H N N 312 LYS HA H N N 313 LYS HB2 H N N 314 LYS HB3 H N N 315 LYS HG2 H N N 316 LYS HG3 H N N 317 LYS HD2 H N N 318 LYS HD3 H N N 319 LYS HE2 H N N 320 LYS HE3 H N N 321 LYS HZ1 H N N 322 LYS HZ2 H N N 323 LYS HZ3 H N N 324 LYS HXT H N N 325 MET N N N N 326 MET CA C N S 327 MET C C N N 328 MET O O N N 329 MET CB C N N 330 MET CG C N N 331 MET SD S N N 332 MET CE C N N 333 MET OXT O N N 334 MET H H N N 335 MET H2 H N N 336 MET HA H N N 337 MET HB2 H N N 338 MET HB3 H N N 339 MET HG2 H N N 340 MET HG3 H N N 341 MET HE1 H N N 342 MET HE2 H N N 343 MET HE3 H N N 344 MET HXT H N N 345 PEG C1 C N N 346 PEG O1 O N N 347 PEG C2 C N N 348 PEG O2 O N N 349 PEG C3 C N N 350 PEG C4 C N N 351 PEG O4 O N N 352 PEG H11 H N N 353 PEG H12 H N N 354 PEG HO1 H N N 355 PEG H21 H N N 356 PEG H22 H N N 357 PEG H31 H N N 358 PEG H32 H N N 359 PEG H41 H N N 360 PEG H42 H N N 361 PEG HO4 H N N 362 PHE N N N N 363 PHE CA C N S 364 PHE C C N N 365 PHE O O N N 366 PHE CB C N N 367 PHE CG C Y N 368 PHE CD1 C Y N 369 PHE CD2 C Y N 370 PHE CE1 C Y N 371 PHE CE2 C Y N 372 PHE CZ C Y N 373 PHE OXT O N N 374 PHE H H N N 375 PHE H2 H N N 376 PHE HA H N N 377 PHE HB2 H N N 378 PHE HB3 H N N 379 PHE HD1 H N N 380 PHE HD2 H N N 381 PHE HE1 H N N 382 PHE HE2 H N N 383 PHE HZ H N N 384 PHE HXT H N N 385 PRO N N N N 386 PRO CA C N S 387 PRO C C N N 388 PRO O O N N 389 PRO CB C N N 390 PRO CG C N N 391 PRO CD C N N 392 PRO OXT O N N 393 PRO H H N N 394 PRO HA H N N 395 PRO HB2 H N N 396 PRO HB3 H N N 397 PRO HG2 H N N 398 PRO HG3 H N N 399 PRO HD2 H N N 400 PRO HD3 H N N 401 PRO HXT H N N 402 SER N N N N 403 SER CA C N S 404 SER C C N N 405 SER O O N N 406 SER CB C N N 407 SER OG O N N 408 SER OXT O N N 409 SER H H N N 410 SER H2 H N N 411 SER HA H N N 412 SER HB2 H N N 413 SER HB3 H N N 414 SER HG H N N 415 SER HXT H N N 416 THR N N N N 417 THR CA C N S 418 THR C C N N 419 THR O O N N 420 THR CB C N R 421 THR OG1 O N N 422 THR CG2 C N N 423 THR OXT O N N 424 THR H H N N 425 THR H2 H N N 426 THR HA H N N 427 THR HB H N N 428 THR HG1 H N N 429 THR HG21 H N N 430 THR HG22 H N N 431 THR HG23 H N N 432 THR HXT H N N 433 TRP N N N N 434 TRP CA C N S 435 TRP C C N N 436 TRP O O N N 437 TRP CB C N N 438 TRP CG C Y N 439 TRP CD1 C Y N 440 TRP CD2 C Y N 441 TRP NE1 N Y N 442 TRP CE2 C Y N 443 TRP CE3 C Y N 444 TRP CZ2 C Y N 445 TRP CZ3 C Y N 446 TRP CH2 C Y N 447 TRP OXT O N N 448 TRP H H N N 449 TRP H2 H N N 450 TRP HA H N N 451 TRP HB2 H N N 452 TRP HB3 H N N 453 TRP HD1 H N N 454 TRP HE1 H N N 455 TRP HE3 H N N 456 TRP HZ2 H N N 457 TRP HZ3 H N N 458 TRP HH2 H N N 459 TRP HXT H N N 460 TYR N N N N 461 TYR CA C N S 462 TYR C C N N 463 TYR O O N N 464 TYR CB C N N 465 TYR CG C Y N 466 TYR CD1 C Y N 467 TYR CD2 C Y N 468 TYR CE1 C Y N 469 TYR CE2 C Y N 470 TYR CZ C Y N 471 TYR OH O N N 472 TYR OXT O N N 473 TYR H H N N 474 TYR H2 H N N 475 TYR HA H N N 476 TYR HB2 H N N 477 TYR HB3 H N N 478 TYR HD1 H N N 479 TYR HD2 H N N 480 TYR HE1 H N N 481 TYR HE2 H N N 482 TYR HH H N N 483 TYR HXT H N N 484 U OP3 O N N 485 U P P N N 486 U OP1 O N N 487 U OP2 O N N 488 U "O5'" O N N 489 U "C5'" C N N 490 U "C4'" C N R 491 U "O4'" O N N 492 U "C3'" C N S 493 U "O3'" O N N 494 U "C2'" C N R 495 U "O2'" O N N 496 U "C1'" C N R 497 U N1 N N N 498 U C2 C N N 499 U O2 O N N 500 U N3 N N N 501 U C4 C N N 502 U O4 O N N 503 U C5 C N N 504 U C6 C N N 505 U HOP3 H N N 506 U HOP2 H N N 507 U "H5'" H N N 508 U "H5''" H N N 509 U "H4'" H N N 510 U "H3'" H N N 511 U "HO3'" H N N 512 U "H2'" H N N 513 U "HO2'" H N N 514 U "H1'" H N N 515 U H3 H N N 516 U H5 H N N 517 U H6 H N N 518 VAL N N N N 519 VAL CA C N S 520 VAL C C N N 521 VAL O O N N 522 VAL CB C N N 523 VAL CG1 C N N 524 VAL CG2 C N N 525 VAL OXT O N N 526 VAL H H N N 527 VAL H2 H N N 528 VAL HA H N N 529 VAL HB H N N 530 VAL HG11 H N N 531 VAL HG12 H N N 532 VAL HG13 H N N 533 VAL HG21 H N N 534 VAL HG22 H N N 535 VAL HG23 H N N 536 VAL HXT H N N 537 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 HOH O H1 sing N N 252 HOH O H2 sing N N 253 ILE N CA sing N N 254 ILE N H sing N N 255 ILE N H2 sing N N 256 ILE CA C sing N N 257 ILE CA CB sing N N 258 ILE CA HA sing N N 259 ILE C O doub N N 260 ILE C OXT sing N N 261 ILE CB CG1 sing N N 262 ILE CB CG2 sing N N 263 ILE CB HB sing N N 264 ILE CG1 CD1 sing N N 265 ILE CG1 HG12 sing N N 266 ILE CG1 HG13 sing N N 267 ILE CG2 HG21 sing N N 268 ILE CG2 HG22 sing N N 269 ILE CG2 HG23 sing N N 270 ILE CD1 HD11 sing N N 271 ILE CD1 HD12 sing N N 272 ILE CD1 HD13 sing N N 273 ILE OXT HXT sing N N 274 LEU N CA sing N N 275 LEU N H sing N N 276 LEU N H2 sing N N 277 LEU CA C sing N N 278 LEU CA CB sing N N 279 LEU CA HA sing N N 280 LEU C O doub N N 281 LEU C OXT sing N N 282 LEU CB CG sing N N 283 LEU CB HB2 sing N N 284 LEU CB HB3 sing N N 285 LEU CG CD1 sing N N 286 LEU CG CD2 sing N N 287 LEU CG HG sing N N 288 LEU CD1 HD11 sing N N 289 LEU CD1 HD12 sing N N 290 LEU CD1 HD13 sing N N 291 LEU CD2 HD21 sing N N 292 LEU CD2 HD22 sing N N 293 LEU CD2 HD23 sing N N 294 LEU OXT HXT sing N N 295 LYS N CA sing N N 296 LYS N H sing N N 297 LYS N H2 sing N N 298 LYS CA C sing N N 299 LYS CA CB sing N N 300 LYS CA HA sing N N 301 LYS C O doub N N 302 LYS C OXT sing N N 303 LYS CB CG sing N N 304 LYS CB HB2 sing N N 305 LYS CB HB3 sing N N 306 LYS CG CD sing N N 307 LYS CG HG2 sing N N 308 LYS CG HG3 sing N N 309 LYS CD CE sing N N 310 LYS CD HD2 sing N N 311 LYS CD HD3 sing N N 312 LYS CE NZ sing N N 313 LYS CE HE2 sing N N 314 LYS CE HE3 sing N N 315 LYS NZ HZ1 sing N N 316 LYS NZ HZ2 sing N N 317 LYS NZ HZ3 sing N N 318 LYS OXT HXT sing N N 319 MET N CA sing N N 320 MET N H sing N N 321 MET N H2 sing N N 322 MET CA C sing N N 323 MET CA CB sing N N 324 MET CA HA sing N N 325 MET C O doub N N 326 MET C OXT sing N N 327 MET CB CG sing N N 328 MET CB HB2 sing N N 329 MET CB HB3 sing N N 330 MET CG SD sing N N 331 MET CG HG2 sing N N 332 MET CG HG3 sing N N 333 MET SD CE sing N N 334 MET CE HE1 sing N N 335 MET CE HE2 sing N N 336 MET CE HE3 sing N N 337 MET OXT HXT sing N N 338 PEG C1 O1 sing N N 339 PEG C1 C2 sing N N 340 PEG C1 H11 sing N N 341 PEG C1 H12 sing N N 342 PEG O1 HO1 sing N N 343 PEG C2 O2 sing N N 344 PEG C2 H21 sing N N 345 PEG C2 H22 sing N N 346 PEG O2 C3 sing N N 347 PEG C3 C4 sing N N 348 PEG C3 H31 sing N N 349 PEG C3 H32 sing N N 350 PEG C4 O4 sing N N 351 PEG C4 H41 sing N N 352 PEG C4 H42 sing N N 353 PEG O4 HO4 sing N N 354 PHE N CA sing N N 355 PHE N H sing N N 356 PHE N H2 sing N N 357 PHE CA C sing N N 358 PHE CA CB sing N N 359 PHE CA HA sing N N 360 PHE C O doub N N 361 PHE C OXT sing N N 362 PHE CB CG sing N N 363 PHE CB HB2 sing N N 364 PHE CB HB3 sing N N 365 PHE CG CD1 doub Y N 366 PHE CG CD2 sing Y N 367 PHE CD1 CE1 sing Y N 368 PHE CD1 HD1 sing N N 369 PHE CD2 CE2 doub Y N 370 PHE CD2 HD2 sing N N 371 PHE CE1 CZ doub Y N 372 PHE CE1 HE1 sing N N 373 PHE CE2 CZ sing Y N 374 PHE CE2 HE2 sing N N 375 PHE CZ HZ sing N N 376 PHE OXT HXT sing N N 377 PRO N CA sing N N 378 PRO N CD sing N N 379 PRO N H sing N N 380 PRO CA C sing N N 381 PRO CA CB sing N N 382 PRO CA HA sing N N 383 PRO C O doub N N 384 PRO C OXT sing N N 385 PRO CB CG sing N N 386 PRO CB HB2 sing N N 387 PRO CB HB3 sing N N 388 PRO CG CD sing N N 389 PRO CG HG2 sing N N 390 PRO CG HG3 sing N N 391 PRO CD HD2 sing N N 392 PRO CD HD3 sing N N 393 PRO OXT HXT sing N N 394 SER N CA sing N N 395 SER N H sing N N 396 SER N H2 sing N N 397 SER CA C sing N N 398 SER CA CB sing N N 399 SER CA HA sing N N 400 SER C O doub N N 401 SER C OXT sing N N 402 SER CB OG sing N N 403 SER CB HB2 sing N N 404 SER CB HB3 sing N N 405 SER OG HG sing N N 406 SER OXT HXT sing N N 407 THR N CA sing N N 408 THR N H sing N N 409 THR N H2 sing N N 410 THR CA C sing N N 411 THR CA CB sing N N 412 THR CA HA sing N N 413 THR C O doub N N 414 THR C OXT sing N N 415 THR CB OG1 sing N N 416 THR CB CG2 sing N N 417 THR CB HB sing N N 418 THR OG1 HG1 sing N N 419 THR CG2 HG21 sing N N 420 THR CG2 HG22 sing N N 421 THR CG2 HG23 sing N N 422 THR OXT HXT sing N N 423 TRP N CA sing N N 424 TRP N H sing N N 425 TRP N H2 sing N N 426 TRP CA C sing N N 427 TRP CA CB sing N N 428 TRP CA HA sing N N 429 TRP C O doub N N 430 TRP C OXT sing N N 431 TRP CB CG sing N N 432 TRP CB HB2 sing N N 433 TRP CB HB3 sing N N 434 TRP CG CD1 doub Y N 435 TRP CG CD2 sing Y N 436 TRP CD1 NE1 sing Y N 437 TRP CD1 HD1 sing N N 438 TRP CD2 CE2 doub Y N 439 TRP CD2 CE3 sing Y N 440 TRP NE1 CE2 sing Y N 441 TRP NE1 HE1 sing N N 442 TRP CE2 CZ2 sing Y N 443 TRP CE3 CZ3 doub Y N 444 TRP CE3 HE3 sing N N 445 TRP CZ2 CH2 doub Y N 446 TRP CZ2 HZ2 sing N N 447 TRP CZ3 CH2 sing Y N 448 TRP CZ3 HZ3 sing N N 449 TRP CH2 HH2 sing N N 450 TRP OXT HXT sing N N 451 TYR N CA sing N N 452 TYR N H sing N N 453 TYR N H2 sing N N 454 TYR CA C sing N N 455 TYR CA CB sing N N 456 TYR CA HA sing N N 457 TYR C O doub N N 458 TYR C OXT sing N N 459 TYR CB CG sing N N 460 TYR CB HB2 sing N N 461 TYR CB HB3 sing N N 462 TYR CG CD1 doub Y N 463 TYR CG CD2 sing Y N 464 TYR CD1 CE1 sing Y N 465 TYR CD1 HD1 sing N N 466 TYR CD2 CE2 doub Y N 467 TYR CD2 HD2 sing N N 468 TYR CE1 CZ doub Y N 469 TYR CE1 HE1 sing N N 470 TYR CE2 CZ sing Y N 471 TYR CE2 HE2 sing N N 472 TYR CZ OH sing N N 473 TYR OH HH sing N N 474 TYR OXT HXT sing N N 475 U OP3 P sing N N 476 U OP3 HOP3 sing N N 477 U P OP1 doub N N 478 U P OP2 sing N N 479 U P "O5'" sing N N 480 U OP2 HOP2 sing N N 481 U "O5'" "C5'" sing N N 482 U "C5'" "C4'" sing N N 483 U "C5'" "H5'" sing N N 484 U "C5'" "H5''" sing N N 485 U "C4'" "O4'" sing N N 486 U "C4'" "C3'" sing N N 487 U "C4'" "H4'" sing N N 488 U "O4'" "C1'" sing N N 489 U "C3'" "O3'" sing N N 490 U "C3'" "C2'" sing N N 491 U "C3'" "H3'" sing N N 492 U "O3'" "HO3'" sing N N 493 U "C2'" "O2'" sing N N 494 U "C2'" "C1'" sing N N 495 U "C2'" "H2'" sing N N 496 U "O2'" "HO2'" sing N N 497 U "C1'" N1 sing N N 498 U "C1'" "H1'" sing N N 499 U N1 C2 sing N N 500 U N1 C6 sing N N 501 U C2 O2 doub N N 502 U C2 N3 sing N N 503 U N3 C4 sing N N 504 U N3 H3 sing N N 505 U C4 O4 doub N N 506 U C4 C5 sing N N 507 U C5 C6 doub N N 508 U C5 H5 sing N N 509 U C6 H6 sing N N 510 VAL N CA sing N N 511 VAL N H sing N N 512 VAL N H2 sing N N 513 VAL CA C sing N N 514 VAL CA CB sing N N 515 VAL CA HA sing N N 516 VAL C O doub N N 517 VAL C OXT sing N N 518 VAL CB CG1 sing N N 519 VAL CB CG2 sing N N 520 VAL CB HB sing N N 521 VAL CG1 HG11 sing N N 522 VAL CG1 HG12 sing N N 523 VAL CG1 HG13 sing N N 524 VAL CG2 HG21 sing N N 525 VAL CG2 HG22 sing N N 526 VAL CG2 HG23 sing N N 527 VAL OXT HXT sing N N 528 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3R2D 'double helix' 3R2D 'a-form double helix' 3R2D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 E G 2 1_555 F C 11 1_555 -1.122 -0.478 -0.198 -8.302 2.966 -6.375 1 R_G2:C11_S R 2 ? S 11 ? 19 1 1 E C 5 1_555 F G 10 1_555 0.206 0.143 0.082 12.785 -14.189 4.763 2 R_C5:G10_S R 5 ? S 10 ? 19 1 1 E C 6 1_555 F G 9 1_555 0.246 0.095 -0.300 18.550 -7.089 3.379 3 R_C6:G9_S R 6 ? S 9 ? 19 1 1 E U 7 1_555 F U 8 1_555 2.565 -1.700 0.143 10.129 -15.442 13.469 4 R_U7:U8_S R 7 ? S 8 ? 16 1 1 E U 8 1_555 F U 7 1_555 -2.110 -1.618 0.149 -6.806 -18.712 15.931 5 R_U8:U7_S R 8 ? S 7 ? 16 1 1 E G 9 1_555 F C 6 1_555 -0.471 0.043 -0.139 -9.380 -3.215 3.326 6 R_G9:C6_S R 9 ? S 6 ? 19 1 1 E G 10 1_555 F C 5 1_555 -0.571 -0.006 0.253 -4.759 -8.619 2.393 7 R_G10:C5_S R 10 ? S 5 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 E G 2 1_555 F C 11 1_555 E C 5 1_555 F G 10 1_555 -1.093 -0.537 2.865 -0.875 -0.449 46.547 -0.646 1.318 2.889 -0.568 1.107 46.557 1 RR_G2C5:G10C11_SS R 2 ? S 11 ? R 5 ? S 10 ? 1 E C 5 1_555 F G 10 1_555 E C 6 1_555 F G 9 1_555 0.327 -1.849 3.102 1.915 6.874 29.830 -4.703 -0.283 2.635 13.119 -3.655 30.653 2 RR_C5C6:G9G10_SS R 5 ? S 10 ? R 6 ? S 9 ? 1 E C 6 1_555 F G 9 1_555 E U 7 1_555 F U 8 1_555 -0.068 -1.605 3.377 -3.823 10.417 35.658 -3.846 -0.384 2.807 16.524 6.065 37.291 3 RR_C6U7:U8G9_SS R 6 ? S 9 ? R 7 ? S 8 ? 1 E U 7 1_555 F U 8 1_555 E U 8 1_555 F U 7 1_555 0.598 -2.802 3.318 2.310 13.668 18.096 -10.756 -0.898 1.037 37.175 -6.283 22.760 4 RR_U7U8:U7U8_SS R 7 ? S 8 ? R 8 ? S 7 ? 1 E U 8 1_555 F U 7 1_555 E G 9 1_555 F C 6 1_555 -0.617 -1.285 3.291 0.687 7.524 36.469 -2.980 1.056 2.965 11.866 -1.084 37.217 5 RR_U8G9:C6U7_SS R 8 ? S 7 ? R 9 ? S 6 ? 1 E G 9 1_555 F C 6 1_555 E G 10 1_555 F C 5 1_555 -0.270 -1.833 3.175 -2.477 3.602 29.499 -4.269 0.038 2.948 7.025 4.832 29.814 6 RR_G9G10:C5C6_SS R 9 ? S 6 ? R 10 ? S 5 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3D3B _pdbx_initial_refinement_model.details 'PDB ENTRY 3D3B' #