HEADER TRANSCRIPTION/RNA 14-MAR-11 3R2D TITLE CRYSTAL STRUCTURE OF ANTITERMINATION FACTORS NUSB AND NUSE IN COMPLEX TITLE 2 WITH DSRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: N UTILIZATION SUBSTANCE PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN NUSB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 30S RIBOSOMAL PROTEIN S10; COMPND 8 CHAIN: J, K; COMPND 9 FRAGMENT: SEE REMARK 999; COMPND 10 SYNONYM: PROTEIN NUSE; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'; COMPND 14 CHAIN: R, S; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: BOXA RNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: AQ_133, NUSB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST527; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 12 ORGANISM_TAXID: 63363; SOURCE 13 GENE: AQ_008, NUSE, RPSJ; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PDEST527; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 22 ORGANISM_TAXID: 63363 KEYWDS CROSS SPECIES NUSB-NUSE-RNA INTERACTION, TRANSCRIPTION ELONGATION, KEYWDS 2 GENE REGULATION, PROTEIN-RNA INTERACTION, TRANSCRIPTION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.STAGNO,X.JI REVDAT 6 13-SEP-23 3R2D 1 REMARK REVDAT 5 30-AUG-23 3R2D 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 08-NOV-17 3R2D 1 REMARK REVDAT 3 26-JUL-17 3R2D 1 SOURCE REMARK REVDAT 2 05-OCT-11 3R2D 1 JRNL VERSN REVDAT 1 22-JUN-11 3R2D 0 JRNL AUTH J.R.STAGNO,A.S.ALTIERI,M.BUBUNENKO,S.G.TARASOV,J.LI, JRNL AUTH 2 D.L.COURT,R.A.BYRD,X.JI JRNL TITL STRUCTURAL BASIS FOR RNA RECOGNITION BY NUSB AND NUSE IN THE JRNL TITL 2 INITIATION OF TRANSCRIPTION ANTITERMINATION. JRNL REF NUCLEIC ACIDS RES. V. 39 7803 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21652641 JRNL DOI 10.1093/NAR/GKR418 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 32201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6462 - 5.0295 0.88 2513 142 0.1967 0.2069 REMARK 3 2 5.0295 - 3.9941 0.90 2461 145 0.1648 0.1916 REMARK 3 3 3.9941 - 3.4898 0.98 2643 133 0.1874 0.2362 REMARK 3 4 3.4898 - 3.1710 0.98 2668 135 0.2130 0.2762 REMARK 3 5 3.1710 - 2.9439 0.98 2639 129 0.2183 0.2781 REMARK 3 6 2.9439 - 2.7704 0.97 2556 158 0.2230 0.2633 REMARK 3 7 2.7704 - 2.6317 0.95 2558 123 0.2269 0.2885 REMARK 3 8 2.6317 - 2.5172 0.95 2501 138 0.2176 0.2868 REMARK 3 9 2.5172 - 2.4203 0.95 2506 147 0.2359 0.2801 REMARK 3 10 2.4203 - 2.3368 0.94 2505 137 0.2258 0.2884 REMARK 3 11 2.3368 - 2.2638 0.95 2493 137 0.2598 0.2993 REMARK 3 12 2.2638 - 2.1991 0.94 2499 135 0.2732 0.3573 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 58.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.88840 REMARK 3 B22 (A**2) : -5.36170 REMARK 3 B33 (A**2) : -0.52660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4028 REMARK 3 ANGLE : 0.723 5486 REMARK 3 CHIRALITY : 0.056 636 REMARK 3 PLANARITY : 0.003 614 REMARK 3 DIHEDRAL : 16.426 1638 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 36.2196 6.3249 -6.4400 REMARK 3 T TENSOR REMARK 3 T11: 0.4396 T22: 0.4561 REMARK 3 T33: 0.4123 T12: 0.1096 REMARK 3 T13: -0.1445 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 4.3722 L22: 4.5761 REMARK 3 L33: 5.9521 L12: -0.6639 REMARK 3 L13: 2.3120 L23: -1.8486 REMARK 3 S TENSOR REMARK 3 S11: 0.5217 S12: 0.1250 S13: -0.7070 REMARK 3 S21: -0.2322 S22: -0.0871 S23: 0.0611 REMARK 3 S31: 0.8666 S32: 0.2541 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 44.3133 25.1322 30.0477 REMARK 3 T TENSOR REMARK 3 T11: 0.4044 T22: 0.3243 REMARK 3 T33: 0.3477 T12: -0.0041 REMARK 3 T13: 0.0095 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.8932 L22: 5.0638 REMARK 3 L33: 3.0538 L12: -0.7649 REMARK 3 L13: -0.0956 L23: 0.2322 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.1689 S13: 0.1546 REMARK 3 S21: 0.3872 S22: -0.1390 S23: -0.3442 REMARK 3 S31: 0.0060 S32: 0.2295 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN J REMARK 3 ORIGIN FOR THE GROUP (A): 27.2362 26.7596 -12.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.4100 T22: 0.6543 REMARK 3 T33: 0.4401 T12: 0.0998 REMARK 3 T13: -0.0794 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 3.6498 L22: 3.4486 REMARK 3 L33: 2.5272 L12: -1.2496 REMARK 3 L13: 1.5787 L23: -0.9818 REMARK 3 S TENSOR REMARK 3 S11: -0.4653 S12: -0.1442 S13: 0.4446 REMARK 3 S21: 0.0918 S22: 0.1083 S23: -0.1946 REMARK 3 S31: -0.3812 S32: -0.2332 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN K REMARK 3 ORIGIN FOR THE GROUP (A): 25.2682 38.8954 32.6479 REMARK 3 T TENSOR REMARK 3 T11: 0.5285 T22: 0.3594 REMARK 3 T33: 0.5926 T12: -0.0687 REMARK 3 T13: 0.1729 T23: -0.1211 REMARK 3 L TENSOR REMARK 3 L11: 2.9719 L22: 3.0937 REMARK 3 L33: 3.3802 L12: -1.7373 REMARK 3 L13: -0.9204 L23: -0.9779 REMARK 3 S TENSOR REMARK 3 S11: 0.1762 S12: -0.1047 S13: 0.0794 REMARK 3 S21: 0.3382 S22: -0.1187 S23: 0.4038 REMARK 3 S31: -0.0604 S32: -0.1445 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN R REMARK 3 ORIGIN FOR THE GROUP (A): 41.2648 32.0214 6.2397 REMARK 3 T TENSOR REMARK 3 T11: 1.1271 T22: 0.8025 REMARK 3 T33: 1.1176 T12: 0.2045 REMARK 3 T13: -0.2677 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 0.6669 L22: 1.6808 REMARK 3 L33: 1.5760 L12: 0.8061 REMARK 3 L13: 0.0130 L23: -1.0909 REMARK 3 S TENSOR REMARK 3 S11: -1.8474 S12: 0.0151 S13: 3.2966 REMARK 3 S21: 0.2521 S22: 0.7603 S23: -0.1861 REMARK 3 S31: -1.2690 S32: 0.4263 S33: 0.0009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN S REMARK 3 ORIGIN FOR THE GROUP (A): 41.0147 24.4569 7.8162 REMARK 3 T TENSOR REMARK 3 T11: 0.6775 T22: 0.6067 REMARK 3 T33: 0.5950 T12: 0.0615 REMARK 3 T13: -0.0290 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 0.1585 L22: -0.0945 REMARK 3 L33: 0.5109 L12: -0.1633 REMARK 3 L13: 0.1010 L23: 0.0537 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.3966 S13: 0.5763 REMARK 3 S21: -0.1041 S22: -0.1949 S23: -0.1761 REMARK 3 S31: -0.7018 S32: 0.3595 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR 225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32257 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.199 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: PDB ENTRY 3D3B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DIAMMONIUM PHOSPHATE, 20% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.39300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.29950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.29950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.39300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOMOLECULES 1 AND 2 REPRESENT SLIGHTLY DIFFERENT BINDING REMARK 300 MODES OF NUSB/NUSE TO DOUBLE-STRANDED RNA REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, J, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, K, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 70 REMARK 465 GLY A 71 REMARK 465 TRP A 72 REMARK 465 ILE A 135 REMARK 465 THR A 136 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 LYS A 139 REMARK 465 GLU A 140 REMARK 465 GLU A 141 REMARK 465 LYS A 142 REMARK 465 PRO A 143 REMARK 465 SER A 144 REMARK 465 LEU A 145 REMARK 465 LYS A 146 REMARK 465 SER A 147 REMARK 465 GLU A 148 REMARK 465 SER B 138 REMARK 465 LYS B 139 REMARK 465 GLU B 140 REMARK 465 GLU B 141 REMARK 465 LYS B 142 REMARK 465 PRO B 143 REMARK 465 SER B 144 REMARK 465 LEU B 145 REMARK 465 LYS B 146 REMARK 465 SER B 147 REMARK 465 GLU B 148 REMARK 465 GLY J 0 REMARK 465 MET J 1 REMARK 465 GLU J 2 REMARK 465 GLN J 3 REMARK 465 GLY J 83 REMARK 465 GLY K 0 REMARK 465 MET K 1 REMARK 465 GLU K 2 REMARK 465 GLN K 3 REMARK 465 GLY K 83 REMARK 465 G S 1 REMARK 465 G S 2 REMARK 465 C S 3 REMARK 465 U S 4 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 C R 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 115 -130.33 -128.51 REMARK 500 MET B 1 47.41 76.69 REMARK 500 ALA B 115 -117.88 -122.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R2C RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RIBOSOME BINDING LOOP (UNP RESIDUES 47-68) OF CHAINS J AND K REMARK 999 (NUSE) HAS BEEN REPLACED WITH A SERINE (SER47) DBREF 3R2D A 1 148 UNP O66530 NUSB_AQUAE 1 148 DBREF 3R2D B 1 148 UNP O66530 NUSB_AQUAE 1 148 DBREF 3R2D J 1 46 UNP O66430 RS10_AQUAE 1 46 DBREF 3R2D J 48 83 UNP O66430 RS10_AQUAE 69 104 DBREF 3R2D K 1 46 UNP O66430 RS10_AQUAE 1 46 DBREF 3R2D K 48 83 UNP O66430 RS10_AQUAE 69 104 DBREF 3R2D R 1 12 PDB 3R2D 3R2D 1 12 DBREF 3R2D S 1 12 PDB 3R2D 3R2D 1 12 SEQADV 3R2D MET A 0 UNP O66530 EXPRESSION TAG SEQADV 3R2D MET B 0 UNP O66530 EXPRESSION TAG SEQADV 3R2D GLY J 0 UNP O66430 EXPRESSION TAG SEQADV 3R2D SER J 47 UNP O66430 SEE REMARK 999 SEQADV 3R2D GLY K 0 UNP O66430 EXPRESSION TAG SEQADV 3R2D SER K 47 UNP O66430 SEE REMARK 999 SEQRES 1 A 149 MET MET ARG TYR ARG LYS GLY ALA ARG ASP THR ALA PHE SEQRES 2 A 149 LEU VAL LEU TYR ARG TRP ASP LEU ARG GLY GLU ASN PRO SEQRES 3 A 149 GLY GLU LEU PHE LYS GLU VAL VAL GLU GLU LYS ASN ILE SEQRES 4 A 149 LYS ASN LYS ASP ALA TYR GLU TYR ALA LYS LYS LEU VAL SEQRES 5 A 149 ASP THR ALA VAL ARG HIS ILE GLU GLU ILE ASP SER ILE SEQRES 6 A 149 ILE GLU LYS HIS LEU LYS GLY TRP SER ILE ASP ARG LEU SEQRES 7 A 149 GLY TYR VAL GLU ARG ASN ALA LEU ARG LEU GLY VAL ALA SEQRES 8 A 149 GLU LEU ILE PHE LEU LYS SER LYS GLU PRO GLY ARG VAL SEQRES 9 A 149 PHE ILE ASP ILE VAL ASP LEU VAL LYS LYS TYR ALA ASP SEQRES 10 A 149 GLU LYS ALA GLY LYS PHE VAL ASN GLY VAL LEU SER ALA SEQRES 11 A 149 ILE TYR LYS ALA TYR ILE THR SER SER LYS GLU GLU LYS SEQRES 12 A 149 PRO SER LEU LYS SER GLU SEQRES 1 B 149 MET MET ARG TYR ARG LYS GLY ALA ARG ASP THR ALA PHE SEQRES 2 B 149 LEU VAL LEU TYR ARG TRP ASP LEU ARG GLY GLU ASN PRO SEQRES 3 B 149 GLY GLU LEU PHE LYS GLU VAL VAL GLU GLU LYS ASN ILE SEQRES 4 B 149 LYS ASN LYS ASP ALA TYR GLU TYR ALA LYS LYS LEU VAL SEQRES 5 B 149 ASP THR ALA VAL ARG HIS ILE GLU GLU ILE ASP SER ILE SEQRES 6 B 149 ILE GLU LYS HIS LEU LYS GLY TRP SER ILE ASP ARG LEU SEQRES 7 B 149 GLY TYR VAL GLU ARG ASN ALA LEU ARG LEU GLY VAL ALA SEQRES 8 B 149 GLU LEU ILE PHE LEU LYS SER LYS GLU PRO GLY ARG VAL SEQRES 9 B 149 PHE ILE ASP ILE VAL ASP LEU VAL LYS LYS TYR ALA ASP SEQRES 10 B 149 GLU LYS ALA GLY LYS PHE VAL ASN GLY VAL LEU SER ALA SEQRES 11 B 149 ILE TYR LYS ALA TYR ILE THR SER SER LYS GLU GLU LYS SEQRES 12 B 149 PRO SER LEU LYS SER GLU SEQRES 1 J 84 GLY MET GLU GLN GLU LYS ILE ARG ILE LYS LEU ARG ALA SEQRES 2 J 84 TYR ASP HIS ARG LEU LEU ASP GLN SER VAL LYS GLN ILE SEQRES 3 J 84 ILE GLU THR VAL LYS ARG THR GLY GLY VAL VAL LYS GLY SEQRES 4 J 84 PRO ILE PRO LEU PRO THR ARG LYS SER GLU PHE SER ARG SEQRES 5 J 84 ILE LEU ASP ILE ILE ARG PHE THR PRO GLN THR ILE GLU SEQRES 6 J 84 ALA LEU MET GLU ILE SER LEU PRO ALA GLY VAL ASP VAL SEQRES 7 J 84 GLU VAL LYS MET ARG GLY SEQRES 1 K 84 GLY MET GLU GLN GLU LYS ILE ARG ILE LYS LEU ARG ALA SEQRES 2 K 84 TYR ASP HIS ARG LEU LEU ASP GLN SER VAL LYS GLN ILE SEQRES 3 K 84 ILE GLU THR VAL LYS ARG THR GLY GLY VAL VAL LYS GLY SEQRES 4 K 84 PRO ILE PRO LEU PRO THR ARG LYS SER GLU PHE SER ARG SEQRES 5 K 84 ILE LEU ASP ILE ILE ARG PHE THR PRO GLN THR ILE GLU SEQRES 6 K 84 ALA LEU MET GLU ILE SER LEU PRO ALA GLY VAL ASP VAL SEQRES 7 K 84 GLU VAL LYS MET ARG GLY SEQRES 1 R 12 G G C U C C U U G G C A SEQRES 1 S 12 G G C U C C U U G G C A HET PEG A 149 7 HET PEG B 149 7 HET PEG B 150 7 HET PEG B 151 7 HET PEG B 152 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 7 PEG 5(C4 H10 O3) FORMUL 12 HOH *98(H2 O) HELIX 1 1 ARG A 2 GLY A 22 1 21 HELIX 2 2 ASN A 24 ASN A 37 1 14 HELIX 3 3 ASN A 40 HIS A 57 1 18 HELIX 4 4 HIS A 57 LYS A 67 1 11 HELIX 5 5 HIS A 68 LEU A 69 5 2 HELIX 6 6 SER A 73 LEU A 77 5 5 HELIX 7 7 GLY A 78 ILE A 93 1 16 HELIX 8 8 GLU A 99 ALA A 115 1 17 HELIX 9 9 ASP A 116 TYR A 134 1 19 HELIX 10 10 ARG B 2 GLY B 22 1 21 HELIX 11 11 ASN B 24 ASN B 37 1 14 HELIX 12 12 ASN B 40 HIS B 57 1 18 HELIX 13 13 HIS B 57 LYS B 67 1 11 HELIX 14 14 SER B 73 LEU B 77 5 5 HELIX 15 15 GLY B 78 ILE B 93 1 16 HELIX 16 16 GLU B 99 ALA B 115 1 17 HELIX 17 17 ASP B 116 THR B 136 1 21 HELIX 18 18 ASP J 14 THR J 32 1 19 HELIX 19 19 THR J 59 ILE J 69 1 11 HELIX 20 20 ASP K 14 THR K 32 1 19 HELIX 21 21 THR K 59 ILE K 69 1 11 SHEET 1 A 4 VAL J 35 ARG J 45 0 SHEET 2 A 4 GLU J 48 ARG J 57 -1 O ARG J 57 N VAL J 35 SHEET 3 A 4 LYS J 5 ALA J 12 -1 N ILE J 6 O ILE J 55 SHEET 4 A 4 ASP J 76 ARG J 82 -1 O LYS J 80 N ARG J 7 SHEET 1 B 4 VAL K 35 ARG K 45 0 SHEET 2 B 4 GLU K 48 ARG K 57 -1 O ASP K 54 N LYS K 37 SHEET 3 B 4 ILE K 6 ALA K 12 -1 N ILE K 6 O ILE K 55 SHEET 4 B 4 ASP K 76 MET K 81 -1 O LYS K 80 N ARG K 7 CISPEP 1 MET A 0 MET A 1 0 -5.82 CISPEP 2 GLY J 38 PRO J 39 0 -1.58 CISPEP 3 GLY K 38 PRO K 39 0 -3.59 SITE 1 AC1 2 TRP B 18 ASP B 19 SITE 1 AC2 4 HIS B 57 PHE B 94 ARG K 11 ARG K 45 SITE 1 AC3 2 GLY B 101 ILE B 105 SITE 1 AC4 1 TYR B 44 CRYST1 76.786 79.940 106.599 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013023 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009381 0.00000