HEADER VIRAL PROTEIN 14-MAR-11 3R2V TITLE CRYSTAL STRUCTURE OF POLYMERASE BASIC PROTEIN 2 E538-R753 FROM TITLE 2 INFLUENZA A VIRUS A/YOKOHAMA/2017/03 H3N2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PB2 C-TERMINAL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 41857; SOURCE 4 STRAIN: A/YOKOHAMA/2017/03(H3N2); SOURCE 5 GENE: PB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, INFLUENZA, FLU, POLYMERASE BASIC, PB2, KEYWDS 3 H3N2, H1N1, H5N1, VIRUS, VIRAL PROTEIN, 2003 AVIAN FLU OUTBREAK EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3R2V 1 REMARK REVDAT 2 05-OCT-11 3R2V 1 JRNL VERSN REVDAT 1 30-MAR-11 3R2V 0 JRNL AUTH E.R.SMITH,D.W.BEGLEY,V.ANDERSON,A.C.RAYMOND,T.E.HAFFNER, JRNL AUTH 2 J.I.ROBINSON,T.E.EDWARDS,N.DUNCAN,C.J.GERDTS,M.B.MIXON, JRNL AUTH 3 P.NOLLERT,B.L.STAKER,L.J.STEWART JRNL TITL THE PROTEIN MAKER: AN AUTOMATED SYSTEM FOR HIGH-THROUGHPUT JRNL TITL 2 PARALLEL PURIFICATION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1015 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21904043 JRNL DOI 10.1107/S1744309111028776 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 46148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2817 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.622 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1535 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2085 ; 1.278 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 200 ; 5.293 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;33.175 ;23.279 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;11.757 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1137 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 967 ; 1.214 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1561 ; 1.984 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 568 ; 2.592 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 519 ; 3.812 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1528 ; 1.199 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 541 A 563 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1524 19.0191 -8.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0307 REMARK 3 T33: 0.0106 T12: -0.0240 REMARK 3 T13: -0.0120 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.0062 L22: 1.4519 REMARK 3 L33: 2.4694 L12: -0.4679 REMARK 3 L13: 1.0669 L23: -1.1567 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: 0.0130 S13: -0.0130 REMARK 3 S21: 0.0802 S22: -0.0558 S23: -0.1009 REMARK 3 S31: -0.1261 S32: 0.1982 S33: 0.0529 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 564 A 610 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8084 13.7269 -17.9354 REMARK 3 T TENSOR REMARK 3 T11: 0.0203 T22: 0.0172 REMARK 3 T33: 0.0047 T12: -0.0029 REMARK 3 T13: -0.0010 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.7014 L22: 0.6068 REMARK 3 L33: 0.6479 L12: -0.0386 REMARK 3 L13: 0.0435 L23: -0.1303 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: 0.0860 S13: -0.0537 REMARK 3 S21: -0.0372 S22: -0.0243 S23: -0.0048 REMARK 3 S31: -0.0137 S32: 0.0660 S33: 0.0121 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 611 A 645 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6477 8.3486 -11.2955 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0047 REMARK 3 T33: 0.0163 T12: -0.0049 REMARK 3 T13: -0.0053 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.3804 L22: 1.4210 REMARK 3 L33: 0.5593 L12: -0.2745 REMARK 3 L13: 0.1740 L23: -0.0778 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0213 S13: -0.0730 REMARK 3 S21: 0.0579 S22: 0.0022 S23: 0.0668 REMARK 3 S31: -0.0047 S32: 0.0099 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 646 A 697 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6360 16.6520 -4.0310 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0433 REMARK 3 T33: 0.0266 T12: 0.0001 REMARK 3 T13: 0.0074 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.9803 L22: 0.2526 REMARK 3 L33: 0.6544 L12: 0.1281 REMARK 3 L13: 0.6462 L23: -0.0384 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.1200 S13: -0.0514 REMARK 3 S21: 0.0562 S22: 0.0421 S23: 0.0560 REMARK 3 S31: -0.0933 S32: -0.0643 S33: -0.0353 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 698 A 738 REMARK 3 ORIGIN FOR THE GROUP (A): -36.3578 11.1484 -13.1462 REMARK 3 T TENSOR REMARK 3 T11: 0.0013 T22: 0.0328 REMARK 3 T33: 0.0462 T12: 0.0053 REMARK 3 T13: 0.0047 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.7428 L22: 1.6766 REMARK 3 L33: 1.5482 L12: 0.1062 REMARK 3 L13: -0.2926 L23: -0.5903 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: -0.0587 S13: -0.1620 REMARK 3 S21: 0.0333 S22: 0.1034 S23: 0.2331 REMARK 3 S31: -0.0396 S32: -0.2113 S33: -0.1221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3R2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46293 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 2VY6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INVAB.07055.C.D17 PD00118 AT 24.51 REMARK 280 MG/ML AGAINST 0.1 M MIB PH 6.0, 25% PEG 1500, 100 MM NAI, REMARK 280 CRYSTAL TRACKING ID 220930B6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 26.40500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.40500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -52.81000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 538 REMARK 465 ILE A 539 REMARK 465 ASN A 540 REMARK 465 PRO A 679 REMARK 465 ASP A 680 REMARK 465 GLU A 681 REMARK 465 SER A 682 REMARK 465 THR A 683 REMARK 465 SER A 684 REMARK 465 ARG A 739 REMARK 465 ASP A 740 REMARK 465 SER A 741 REMARK 465 SER A 742 REMARK 465 ILE A 743 REMARK 465 LEU A 744 REMARK 465 THR A 745 REMARK 465 ASP A 746 REMARK 465 SER A 747 REMARK 465 GLN A 748 REMARK 465 THR A 749 REMARK 465 ALA A 750 REMARK 465 THR A 751 REMARK 465 LYS A 752 REMARK 465 ARG A 753 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 543 CG CD OE1 OE2 REMARK 470 LYS A 627 CG CD CE NZ REMARK 470 ARG A 630 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 660 CG CD CE NZ REMARK 470 GLU A 677 CG CD OE1 OE2 REMARK 470 ASP A 678 CG OD1 OD2 REMARK 470 LYS A 699 CG CD CE NZ REMARK 470 ARG A 702 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 715 CG OD1 ND2 REMARK 470 GLN A 728 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 639 O HOH A 112 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BO3 A 754 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KHW RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF PB2 FROM INFLUENZA VIRUS A/MEXICO/INDRE4487/ REMARK 900 2009(H1N1) REMARK 900 RELATED ID: 3KC6 RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF PB2 FROM INFLUENZA VIRUS A/VIETNAM/1203/2004 REMARK 900 (H5N1) REMARK 900 RELATED ID: 3L56 RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF PB2 FROM INFLUENZA VIRUS A/VIETNAM/1203/2004 REMARK 900 (H5N1) REMARK 900 RELATED ID: 2VY6 RELATED DB: PDB REMARK 900 PB2 SUBUNIT K627 REMARK 900 RELATED ID: INVAB.07055.C RELATED DB: TARGETDB DBREF 3R2V A 538 753 PDB 3R2V 3R2V 538 753 SEQRES 1 A 216 GLU ILE ASN GLY PRO GLU SER VAL LEU VAL ASN THR TYR SEQRES 2 A 216 GLN TRP ILE ILE ARG ASN TRP GLU ALA VAL LYS ILE GLN SEQRES 3 A 216 TRP SER GLN ASN PRO ALA MET LEU TYR ASN LYS MET GLU SEQRES 4 A 216 PHE GLU PRO PHE GLN SER LEU VAL PRO LYS ALA ILE ARG SEQRES 5 A 216 SER GLN TYR SER GLY PHE VAL ARG THR LEU PHE GLN GLN SEQRES 6 A 216 MET ARG ASP VAL LEU GLY THR PHE ASP THR THR GLN ILE SEQRES 7 A 216 ILE LYS LEU LEU PRO PHE ALA ALA ALA PRO PRO LYS GLN SEQRES 8 A 216 SER ARG MET GLN PHE SER SER LEU THR VAL ASN VAL ARG SEQRES 9 A 216 GLY SER GLY MET ARG ILE LEU VAL ARG GLY ASN SER PRO SEQRES 10 A 216 VAL PHE ASN TYR ASN LYS THR THR LYS ARG LEU THR ILE SEQRES 11 A 216 LEU GLY LYS ASP ALA GLY THR LEU ILE GLU ASP PRO ASP SEQRES 12 A 216 GLU SER THR SER GLY VAL GLU SER ALA VAL LEU ARG GLY SEQRES 13 A 216 PHE LEU ILE ILE GLY LYS GLU ASP ARG ARG TYR GLY PRO SEQRES 14 A 216 ALA LEU SER ILE ASN GLU LEU SER ASN LEU ALA LYS GLY SEQRES 15 A 216 GLU LYS ALA ASN VAL LEU ILE GLY GLN GLY ASP VAL VAL SEQRES 16 A 216 LEU VAL MET LYS ARG LYS ARG ASP SER SER ILE LEU THR SEQRES 17 A 216 ASP SER GLN THR ALA THR LYS ARG HET IOD A 1 1 HET IOD A 2 1 HET IOD A 3 1 HET IOD A 4 1 HET IOD A 5 2 HET IOD A 6 1 HET IOD A 7 1 HET IOD A 8 1 HET IOD A 9 1 HET IOD A 10 1 HET IOD A 11 1 HET BO3 A 754 4 HETNAM IOD IODIDE ION HETNAM BO3 BORIC ACID FORMUL 2 IOD 11(I 1-) FORMUL 13 BO3 B H3 O3 FORMUL 14 HOH *211(H2 O) HELIX 1 1 GLY A 541 ASN A 556 1 16 HELIX 2 2 ASN A 556 ASN A 567 1 12 HELIX 3 3 ASN A 567 ASN A 573 1 7 HELIX 4 4 LYS A 574 GLU A 576 5 3 HELIX 5 5 PHE A 577 SER A 582 1 6 HELIX 6 6 ILE A 588 VAL A 606 1 19 HELIX 7 7 ASP A 611 LEU A 619 1 9 HELIX 8 8 PRO A 620 ALA A 624 5 5 HELIX 9 9 ASP A 701 GLY A 705 5 5 SHEET 1 A 2 SER A 635 VAL A 640 0 SHEET 2 A 2 SER A 643 LEU A 648 -1 O ILE A 647 N LEU A 636 SHEET 1 B 3 PHE A 656 TYR A 658 0 SHEET 2 B 3 ARG A 664 ILE A 667 -1 O THR A 666 N ASN A 657 SHEET 3 B 3 LYS A 670 THR A 674 -1 O ALA A 672 N LEU A 665 SHEET 1 C 3 PHE A 694 LYS A 699 0 SHEET 2 C 3 ASP A 730 LYS A 736 -1 O LEU A 733 N ILE A 697 SHEET 3 C 3 LYS A 721 GLY A 727 -1 N ALA A 722 O VAL A 734 SITE 1 AC1 1 ASP A 671 SITE 1 AC2 1 GLN A 628 SITE 1 AC3 4 HOH A 163 GLN A 632 SER A 714 LYS A 736 SITE 1 AC4 1 LYS A 721 SITE 1 AC5 3 MET A 631 GLN A 632 ASN A 711 SITE 1 AC6 1 HOH A 122 SITE 1 AC7 1 ARG A 646 SITE 1 AC8 1 GLY A 642 SITE 1 AC9 5 HOH A 187 ASP A 611 THR A 612 GLU A 677 SITE 2 AC9 5 ASP A 678 CRYST1 52.810 106.540 33.490 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029860 0.00000