HEADER PROTEIN TRANSPORT 16-MAR-11 3R3Q TITLE CRYSTAL STRUCTURE OF THE YEAST VPS23 UEV DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR PROTEIN STP22 OF TEMPERATURE-SENSITIVE ALPHA- COMPND 3 FACTOR RECEPTOR AND ARGININE PERMEASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: N-TERMINAL UEV DOMAIN (UNP RESIDUES 1-160); COMPND 6 SYNONYM: ESCRT-I COMPLEX SUBUNIT VPS23, VACUOLAR PROTEIN SORTING- COMPND 7 ASSOCIATED PROTEIN 23; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: STP22, VPS23, YCL008C, YCL8C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGST2 KEYWDS ENDOSOMAL SORTING, ESCRT-I, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR X.REN,J.H.HURLEY REVDAT 3 13-SEP-23 3R3Q 1 REMARK SEQADV LINK REVDAT 2 15-JUN-11 3R3Q 1 JRNL REVDAT 1 04-MAY-11 3R3Q 0 JRNL AUTH X.REN,J.H.HURLEY JRNL TITL STRUCTURAL BASIS FOR ENDOSOMAL RECRUITMENT OF ESCRT-I BY JRNL TITL 2 ESCRT-0 IN YEAST. JRNL REF EMBO J. V. 30 2130 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21505419 JRNL DOI 10.1038/EMBOJ.2011.122 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 27632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6268 - 3.1232 1.00 2902 171 0.1845 0.1946 REMARK 3 2 3.1232 - 2.4792 1.00 2749 167 0.1679 0.1828 REMARK 3 3 2.4792 - 2.1659 0.99 2740 140 0.1565 0.1943 REMARK 3 4 2.1659 - 1.9679 0.98 2689 133 0.1405 0.1582 REMARK 3 5 1.9679 - 1.8269 0.97 2668 130 0.1350 0.1644 REMARK 3 6 1.8269 - 1.7192 0.96 2606 137 0.1378 0.1469 REMARK 3 7 1.7192 - 1.6331 0.94 2530 131 0.1454 0.1686 REMARK 3 8 1.6331 - 1.5620 0.94 2550 127 0.1524 0.1852 REMARK 3 9 1.5620 - 1.5018 0.91 2466 132 0.1788 0.1883 REMARK 3 10 1.5018 - 1.4500 0.87 2333 131 0.1989 0.2258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.60620 REMARK 3 B22 (A**2) : 2.02600 REMARK 3 B33 (A**2) : 0.58020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1332 REMARK 3 ANGLE : 1.091 1815 REMARK 3 CHIRALITY : 0.071 202 REMARK 3 PLANARITY : 0.007 239 REMARK 3 DIHEDRAL : 12.688 464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27632 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UZX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZINC ACETATE, 0.1 M IMIDAZOLE, REMARK 280 25% 1,2-PROPANEDIOL, 10% GLYCEROL, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.02950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.47300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.56950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.47300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.02950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.56950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 ILE A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 147 O HOH A 277 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 115 26.05 -72.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 162 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 IMD A 174 N1 124.0 REMARK 620 3 HOH A 243 O 99.3 108.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 168 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 27 OD2 REMARK 620 2 THR A 30 OG1 94.0 REMARK 620 3 ACT A 177 O 148.9 87.7 REMARK 620 4 IMD A 180 N1 101.5 91.4 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 NE2 REMARK 620 2 IMD A 171 N1 107.0 REMARK 620 3 ACT A 178 OXT 115.5 120.4 REMARK 620 4 ACT A 178 O 87.7 92.5 51.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 169 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 40 OD2 REMARK 620 2 IMD A 171 N3 94.5 REMARK 620 3 HOH A 250 O 107.9 115.9 REMARK 620 4 HOH A 274 O 127.5 119.2 92.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 166 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE1 REMARK 620 2 IMD A 173 N3 103.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 74 OD1 REMARK 620 2 IMD A 172 N1 126.6 REMARK 620 3 HOH A 237 O 103.4 105.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 165 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 118 OE2 REMARK 620 2 GLU A 154 OE2 109.7 REMARK 620 3 HOH A 276 O 112.7 105.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 167 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 ND1 REMARK 620 2 IMD A 175 N1 107.2 REMARK 620 3 ACT A 176 OXT 156.3 92.0 REMARK 620 4 ACT A 176 O 106.6 145.2 53.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 161 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 OD2 REMARK 620 2 IMD A 179 N1 96.8 REMARK 620 3 HOH A 275 O 115.0 110.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 177 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 178 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 181 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R42 RELATED DB: PDB REMARK 900 VPS23 UEV DOMAIN BOUND TO VPS27 PEPTIDE DBREF 3R3Q A 1 160 UNP P25604 STP22_YEAST 1 160 SEQADV 3R3Q GLY A -1 UNP P25604 EXPRESSION TAG SEQADV 3R3Q ALA A 0 UNP P25604 EXPRESSION TAG SEQADV 3R3Q ALA A 133 UNP P25604 CYS 133 ENGINEERED MUTATION SEQRES 1 A 162 GLY ALA MET SER ALA ASN GLY LYS ILE SER VAL PRO GLU SEQRES 2 A 162 ALA VAL VAL ASN TRP LEU PHE LYS VAL ILE GLN PRO ILE SEQRES 3 A 162 TYR ASN ASP GLY ARG THR THR PHE HIS ASP SER LEU ALA SEQRES 4 A 162 LEU LEU ASP ASN PHE HIS SER LEU ARG PRO ARG THR ARG SEQRES 5 A 162 VAL PHE THR HIS SER ASP GLY THR PRO GLN LEU LEU LEU SEQRES 6 A 162 SER ILE TYR GLY THR ILE SER THR GLY GLU ASP GLY SER SEQRES 7 A 162 SER PRO HIS SER ILE PRO VAL ILE MET TRP VAL PRO SER SEQRES 8 A 162 MET TYR PRO VAL LYS PRO PRO PHE ILE SER ILE ASN LEU SEQRES 9 A 162 GLU ASN PHE ASP MET ASN THR ILE SER SER SER LEU PRO SEQRES 10 A 162 ILE GLN GLU TYR ILE ASP SER ASN GLY TRP ILE ALA LEU SEQRES 11 A 162 PRO ILE LEU HIS ALA TRP ASP PRO ALA ALA MET ASN LEU SEQRES 12 A 162 ILE MET VAL VAL GLN GLU LEU MET SER LEU LEU HIS GLU SEQRES 13 A 162 PRO PRO GLN ASP GLN ALA HET ZN A 161 1 HET ZN A 162 1 HET ZN A 163 1 HET ZN A 164 1 HET ZN A 165 1 HET ZN A 166 1 HET ZN A 167 1 HET ZN A 168 1 HET ZN A 169 1 HET CL A 170 1 HET IMD A 171 5 HET IMD A 172 5 HET IMD A 173 5 HET IMD A 174 5 HET IMD A 175 5 HET ACT A 176 4 HET ACT A 177 4 HET ACT A 178 4 HET IMD A 179 5 HET IMD A 180 5 HET ACT A 181 4 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM IMD IMIDAZOLE HETNAM ACT ACETATE ION FORMUL 2 ZN 9(ZN 2+) FORMUL 11 CL CL 1- FORMUL 12 IMD 7(C3 H5 N2 1+) FORMUL 17 ACT 4(C2 H3 O2 1-) FORMUL 23 HOH *122(H2 O) HELIX 1 1 PRO A 10 GLN A 22 1 13 HELIX 2 2 ASP A 27 PHE A 42 1 16 HELIX 3 3 LEU A 102 PHE A 105 5 4 HELIX 4 4 PRO A 115 ILE A 120 1 6 HELIX 5 5 LEU A 128 ALA A 133 5 6 HELIX 6 6 ASP A 135 MET A 139 5 5 HELIX 7 7 ASN A 140 LEU A 151 1 12 SHEET 1 A 4 LEU A 45 THR A 53 0 SHEET 2 A 4 PRO A 59 SER A 70 -1 O SER A 64 N ARG A 48 SHEET 3 A 4 SER A 80 TRP A 86 -1 O MET A 85 N ILE A 65 SHEET 4 A 4 PHE A 97 ILE A 100 -1 O PHE A 97 N TRP A 86 LINK OE2 GLU A 11 ZN ZN A 162 1555 1555 1.96 LINK OD2 ASP A 27 ZN ZN A 168 1555 1555 1.97 LINK OG1 THR A 30 ZN ZN A 168 1555 1555 2.12 LINK NE2 HIS A 33 ZN ZN A 163 1555 1555 2.04 LINK OD2 ASP A 40 ZN ZN A 169 1555 1555 2.05 LINK OE1 GLU A 73 ZN ZN A 166 1555 1555 2.03 LINK OD1 ASP A 74 ZN ZN A 164 1555 1555 1.96 LINK OE2 GLU A 118 ZN ZN A 165 1555 1555 1.99 LINK ND1 HIS A 153 ZN ZN A 167 1555 1555 2.09 LINK OE2 GLU A 154 ZN ZN A 165 1555 1555 2.01 LINK OD2 ASP A 158 ZN ZN A 161 1555 1555 1.94 LINK ZN ZN A 161 N1 IMD A 179 1555 1555 2.30 LINK ZN ZN A 161 O HOH A 275 1555 1555 2.24 LINK ZN ZN A 162 N1 IMD A 174 1555 1555 2.03 LINK ZN ZN A 162 O HOH A 243 1555 1555 2.07 LINK ZN ZN A 163 N1 IMD A 171 1555 1555 2.04 LINK ZN ZN A 163 OXT ACT A 178 1555 1555 2.00 LINK ZN ZN A 163 O ACT A 178 1555 1555 2.66 LINK ZN ZN A 164 N1 IMD A 172 1555 1555 1.99 LINK ZN ZN A 164 O HOH A 237 1555 1555 2.04 LINK ZN ZN A 165 O HOH A 276 1555 1555 2.26 LINK ZN ZN A 166 N3 IMD A 173 1555 1555 2.03 LINK ZN ZN A 167 N1 IMD A 175 1555 1555 2.04 LINK ZN ZN A 167 OXT ACT A 176 1555 1555 2.21 LINK ZN ZN A 167 O ACT A 176 1555 1555 2.44 LINK ZN ZN A 168 O ACT A 177 1555 1555 1.89 LINK ZN ZN A 168 N1 IMD A 180 1555 1555 2.19 LINK ZN ZN A 169 N3 IMD A 171 1555 1555 2.13 LINK ZN ZN A 169 O HOH A 250 1555 1555 2.27 LINK ZN ZN A 169 O HOH A 274 1555 1555 2.40 CISPEP 1 TYR A 91 PRO A 92 0 5.82 SITE 1 AC1 4 HIS A 79 ASP A 158 IMD A 179 HOH A 275 SITE 1 AC2 4 GLU A 11 ASP A 34 IMD A 174 HOH A 243 SITE 1 AC3 4 HIS A 33 ASP A 135 IMD A 171 ACT A 178 SITE 1 AC4 5 ASP A 56 THR A 58 ASP A 74 IMD A 172 SITE 2 AC4 5 HOH A 237 SITE 1 AC5 4 HIS A 54 GLU A 118 GLU A 154 HOH A 276 SITE 1 AC6 4 GLU A 73 HIS A 132 CL A 170 IMD A 173 SITE 1 AC7 4 ASP A 121 HIS A 153 IMD A 175 ACT A 176 SITE 1 AC8 4 ASP A 27 THR A 30 ACT A 177 IMD A 180 SITE 1 AC9 4 ASP A 40 IMD A 171 HOH A 250 HOH A 274 SITE 1 BC1 6 GLU A 73 SER A 111 LEU A 114 HIS A 132 SITE 2 BC1 6 ZN A 166 IMD A 173 SITE 1 BC2 9 HIS A 33 LEU A 36 ALA A 37 ASP A 40 SITE 2 BC2 9 ASP A 135 ALA A 137 ZN A 163 ZN A 169 SITE 3 BC2 9 ACT A 178 SITE 1 BC3 7 HIS A 54 ASP A 56 THR A 58 ASP A 74 SITE 2 BC3 7 GLU A 118 ZN A 164 HOH A 289 SITE 1 BC4 9 GLU A 73 SER A 111 LEU A 114 ALA A 127 SITE 2 BC4 9 HIS A 132 ZN A 166 CL A 170 IMD A 175 SITE 3 BC4 9 ACT A 176 SITE 1 BC5 8 GLU A 11 THR A 30 ASP A 34 PRO A 136 SITE 2 BC5 8 ALA A 137 MET A 139 ZN A 162 IMD A 180 SITE 1 BC6 9 GLU A 73 TYR A 119 ASP A 121 TRP A 125 SITE 2 BC6 9 ALA A 127 HIS A 153 ZN A 167 IMD A 173 SITE 3 BC6 9 ACT A 176 SITE 1 BC7 7 ASP A 121 TRP A 125 HIS A 153 GLU A 154 SITE 2 BC7 7 ZN A 167 IMD A 173 IMD A 175 SITE 1 BC8 6 PRO A 10 GLU A 11 ASP A 27 THR A 30 SITE 2 BC8 6 ZN A 168 IMD A 180 SITE 1 BC9 6 ASN A 15 HIS A 33 ASP A 135 ZN A 163 SITE 2 BC9 6 IMD A 171 HOH A 227 SITE 1 CC1 8 SER A 44 THR A 68 SER A 70 HIS A 79 SITE 2 CC1 8 SER A 80 ASP A 158 ZN A 161 HOH A 260 SITE 1 CC2 7 SER A 8 VAL A 9 ASP A 27 THR A 30 SITE 2 CC2 7 ZN A 168 IMD A 174 ACT A 177 SITE 1 CC3 4 TRP A 16 PRO A 47 HIS A 132 HOH A 209 CRYST1 36.059 47.139 92.946 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027732 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010759 0.00000