data_3R4F # _entry.id 3R4F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3R4F pdb_00003r4f 10.2210/pdb3r4f/pdb NDB NA1024 ? ? RCSB RCSB064475 ? ? WWPDB D_1000064475 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3R4F _pdbx_database_status.recvd_initial_deposition_date 2011-03-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ding, F.' 1 'Lu, C.' 2 'Zhano, W.' 3 'Rajashankar, K.R.' 4 'Anderson, D.L.' 5 'Jardine, P.J.' 6 'Grimes, S.' 7 'Ke, A.' 8 # _citation.id primary _citation.title 'Structure and assembly of the essential RNA ring component of a viral DNA packaging motor.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 7357 _citation.page_last 7362 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21471452 _citation.pdbx_database_id_DOI 10.1073/pnas.1016690108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ding, F.' 1 ? primary 'Lu, C.' 2 ? primary 'Zhao, W.' 3 ? primary 'Rajashankar, K.R.' 4 ? primary 'Anderson, D.L.' 5 ? primary 'Jardine, P.J.' 6 ? primary 'Grimes, S.' 7 ? primary 'Ke, A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn pRNA 21189.488 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 9 ? ? ? ? 3 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC _entity_poly.pdbx_seq_one_letter_code_can GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 G n 1 7 U n 1 8 A n 1 9 U n 1 10 G n 1 11 U n 1 12 G n 1 13 G n 1 14 G n 1 15 G n 1 16 A n 1 17 A n 1 18 A n 1 19 C n 1 20 C n 1 21 C n 1 22 U n 1 23 G n 1 24 A n 1 25 U n 1 26 U n 1 27 G n 1 28 A n 1 29 G n 1 30 U n 1 31 U n 1 32 C n 1 33 A n 1 34 G n 1 35 C n 1 36 C n 1 37 C n 1 38 A n 1 39 C n 1 40 A n 1 41 U n 1 42 A n 1 43 C n 1 44 U n 1 45 U n 1 46 U n 1 47 G n 1 48 U n 1 49 U n 1 50 G n 1 51 A n 1 52 U n 1 53 G n 1 54 G n 1 55 U n 1 56 U n 1 57 G n 1 58 U n 1 59 C n 1 60 A n 1 61 A n 1 62 U n 1 63 C n 1 64 G n 1 65 C n 1 66 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA WAS PREPARED BY IN VITRO TRANSCRIPTION WITH T7 RNA POLYMERASE' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G GUA A . n A 1 2 G 2 2 2 G GUA A . n A 1 3 C 3 3 3 C CYT A . n A 1 4 G 4 4 4 G GUA A . n A 1 5 U 5 5 5 U URI A . n A 1 6 G 6 6 6 G GUA A . n A 1 7 U 7 7 7 U URI A . n A 1 8 A 8 8 8 A ADE A . n A 1 9 U 9 9 9 U URI A . n A 1 10 G 10 10 10 G GUA A . n A 1 11 U 11 11 11 U URI A . n A 1 12 G 12 12 12 G GUA A . n A 1 13 G 13 13 13 G GUA A . n A 1 14 G 14 14 14 G GUA A . n A 1 15 G 15 15 15 G GUA A . n A 1 16 A 16 16 16 A ADE A . n A 1 17 A 17 17 17 A ADE A . n A 1 18 A 18 18 18 A ADE A . n A 1 19 C 19 19 19 C CYT A . n A 1 20 C 20 20 20 C CYT A . n A 1 21 C 21 21 21 C CYT A . n A 1 22 U 22 22 22 U URI A . n A 1 23 G 23 23 23 G GUA A . n A 1 24 A 24 24 24 A ADE A . n A 1 25 U 25 25 25 U URI A . n A 1 26 U 26 26 26 U URI A . n A 1 27 G 27 27 27 G GUA A . n A 1 28 A 28 28 28 A ADE A . n A 1 29 G 29 29 29 G GUA A . n A 1 30 U 30 30 30 U URI A . n A 1 31 U 31 31 31 U URI A . n A 1 32 C 32 32 32 C CYT A . n A 1 33 A 33 33 33 A ADE A . n A 1 34 G 34 34 34 G GUA A . n A 1 35 C 35 35 35 C CYT A . n A 1 36 C 36 36 36 C CYT A . n A 1 37 C 37 37 37 C CYT A . n A 1 38 A 38 38 38 A ADE A . n A 1 39 C 39 39 39 C CYT A . n A 1 40 A 40 40 40 A ADE A . n A 1 41 U 41 41 41 U URI A . n A 1 42 A 42 42 42 A ADE A . n A 1 43 C 43 43 43 C CYT A . n A 1 44 U 44 44 44 U URI A . n A 1 45 U 45 45 45 U URI A . n A 1 46 U 46 46 46 U URI A . n A 1 47 G 47 47 47 G GUA A . n A 1 48 U 48 48 48 U URI A . n A 1 49 U 49 49 49 U URI A . n A 1 50 G 50 50 50 G GUA A . n A 1 51 A 51 51 51 A ADE A . n A 1 52 U 52 52 52 U URI A . n A 1 53 G 53 53 53 G GUA A . n A 1 54 G 54 54 54 G GUA A . n A 1 55 U 55 55 55 U URI A . n A 1 56 U 56 56 56 U URI A . n A 1 57 G 57 57 57 G GUA A . n A 1 58 U 58 58 58 U URI A . n A 1 59 C 59 59 59 C CYT A . n A 1 60 A 60 60 60 A ADE A . n A 1 61 A 61 61 61 A ADE A . n A 1 62 U 62 62 62 U URI A . n A 1 63 C 63 63 63 C CYT A . n A 1 64 G 64 64 64 G GUA A . n A 1 65 C 65 65 65 C CYT A . n A 1 66 C 66 66 66 C CYT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 200 200 MG MG A . C 2 MG 1 201 201 MG MG A . D 2 MG 1 202 202 MG MG A . E 2 MG 1 203 203 MG MG A . F 2 MG 1 204 204 MG MG A . G 2 MG 1 205 205 MG MG A . H 2 MG 1 206 206 MG MG A . I 2 MG 1 207 207 MG MG A . J 2 MG 1 208 208 MG MG A . K 3 HOH 1 67 1 HOH TIP A . K 3 HOH 2 68 2 HOH TIP A . K 3 HOH 3 69 3 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-3000 'data collection' . ? 1 SHELXS phasing . ? 2 REFMAC refinement 5.0 ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 # _cell.entry_id 3R4F _cell.length_a 104.197 _cell.length_b 104.197 _cell.length_c 208.793 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3R4F _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3R4F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 6.69 _exptl_crystal.density_percent_sol 81.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '100 mM MES, 10 mM magnesium diacetate, 2.5 M ammonium sulfate, pH 6.0, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 ? ? 1 2 ? ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 270' ? ? 2 CCD 'ADSC QUANTUM 315' ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.25465 1.0 2 0.97949 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'APS BEAMLINE 24-ID-C' APS 24-ID-C 1.25465 1.25465 2 SYNCHROTRON 'CHESS BEAMLINE F1' CHESS F1 0.97949 0.97949 # _reflns.entry_id 3R4F _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 2.5 _reflns.d_resolution_low 50 _reflns.d_resolution_high 3.5 _reflns.number_obs 6608 _reflns.number_all 6608 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _refine.entry_id 3R4F _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 3.5000 _refine.ls_d_res_low 20.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 87.3000 _refine.ls_number_reflns_obs 6608 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2392 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2709 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 8.5000 _refine.ls_number_reflns_R_free 644 _refine.ls_number_reflns_R_work 5964 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 198.7476 _refine.solvent_model_param_bsol 9.3825 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 9.3330 _refine.aniso_B[2][2] 9.3330 _refine.aniso_B[3][3] -18.6660 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 261.370 _refine.B_iso_min 93.900 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1400 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 1412 _refine_hist.d_res_high 3.5000 _refine_hist.d_res_low 20.0000 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' c_bond_d ? 0.009 ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? 1.353 ? ? ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:dna-rna_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:water.param ? # _database_PDB_matrix.entry_id 3R4F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3R4F _struct.title 'Prohead RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R4F _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'prohead RNA, motor, viral packaging, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3R4F _struct_ref.pdbx_db_accession 3R4F _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3R4F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 66 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3R4F _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 66 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 66 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1530 ? 1 MORE -85 ? 1 'SSA (A^2)' 24150 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 15_545 y+1/2,x-1/2,-z+1/2 0.0000000000 1.0000000000 0.0000000000 52.0985000000 1.0000000000 0.0000000000 0.0000000000 -52.0985000000 0.0000000000 0.0000000000 -1.0000000000 104.3965000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 "O5'" ? ? ? 1_555 G MG . MG ? ? A G 1 A MG 205 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc2 metalc ? ? A A 8 "O3'" ? ? ? 1_555 H MG . MG ? ? A A 8 A MG 206 1_555 ? ? ? ? ? ? ? 2.558 ? ? metalc3 metalc ? ? A U 9 OP1 ? ? ? 1_555 H MG . MG ? ? A U 9 A MG 206 1_555 ? ? ? ? ? ? ? 2.761 ? ? metalc4 metalc ? ? A U 26 O4 ? ? ? 1_555 D MG . MG ? ? A U 26 A MG 202 1_555 ? ? ? ? ? ? ? 2.926 ? ? metalc5 metalc ? ? A G 29 OP2 ? ? ? 1_555 D MG . MG ? ? A G 29 A MG 202 1_555 ? ? ? ? ? ? ? 2.355 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 1 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 1 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 1 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 2 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 2 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 2 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 3 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 3 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 3 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 4 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 4 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 4 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 N3 ? ? ? 1_555 A U 44 O2 ? ? A U 5 A U 44 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog14 hydrog ? ? A U 5 O4 ? ? ? 1_555 A U 44 N3 ? ? A U 5 A U 44 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 6 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 6 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 6 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 7 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 42 N6 ? ? A U 7 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 8 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 8 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 9 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 9 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 10 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 10 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 10 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 11 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 11 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 12 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 12 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 12 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 13 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 13 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 13 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 14 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 14 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 14 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 14 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 14 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 14 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 15 A C 35 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog42 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 22 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 22 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 23 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 23 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 23 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 30 O4 ? ? A A 24 A U 30 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog51 hydrog ? ? A A 24 N1 ? ? ? 1_555 A U 31 N3 ? ? A A 24 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 31 O4 ? ? A A 24 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 25 N3 ? ? ? 1_555 A U 30 O4 ? ? A U 25 A U 30 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog54 hydrog ? ? A U 25 O2 ? ? ? 1_555 A U 30 N3 ? ? A U 25 A U 30 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog55 hydrog ? ? A G 47 N2 ? ? ? 1_555 A U 62 O2 ? ? A G 47 A U 62 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog56 hydrog ? ? A U 48 N3 ? ? ? 1_555 A A 61 N1 ? ? A U 48 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 48 O4 ? ? ? 1_555 A A 61 N6 ? ? A U 48 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 49 N3 ? ? ? 1_555 A A 60 N1 ? ? A U 49 A A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 49 O4 ? ? ? 1_555 A A 60 N6 ? ? A U 49 A A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 50 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 50 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 50 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 51 N1 ? ? ? 1_555 A U 58 N3 ? ? A A 51 A U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 51 N6 ? ? ? 1_555 A U 58 O4 ? ? A A 51 A U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 52 N3 ? ? ? 1_555 A G 57 O6 ? ? A U 52 A G 57 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? A A 8 ? A A 8 ? 1_555 MG ? H MG . ? A MG 206 ? 1_555 OP1 ? A U 9 ? A U 9 ? 1_555 55.5 ? 2 O4 ? A U 26 ? A U 26 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 OP2 ? A G 29 ? A G 29 ? 1_555 71.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 200 ? 2 'BINDING SITE FOR RESIDUE MG A 200' AC2 Software A MG 201 ? 2 'BINDING SITE FOR RESIDUE MG A 201' AC3 Software A MG 202 ? 3 'BINDING SITE FOR RESIDUE MG A 202' AC4 Software A MG 205 ? 2 'BINDING SITE FOR RESIDUE MG A 205' AC5 Software A MG 206 ? 2 'BINDING SITE FOR RESIDUE MG A 206' AC6 Software A MG 207 ? 1 'BINDING SITE FOR RESIDUE MG A 207' AC7 Software A MG 208 ? 2 'BINDING SITE FOR RESIDUE MG A 208' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 1 ? G A 1 . ? 1_555 ? 2 AC1 2 MG G . ? MG A 205 . ? 1_555 ? 3 AC2 2 G A 29 ? G A 29 . ? 1_555 ? 4 AC2 2 C A 32 ? C A 32 . ? 1_555 ? 5 AC3 3 U A 26 ? U A 26 . ? 1_555 ? 6 AC3 3 A A 28 ? A A 28 . ? 1_555 ? 7 AC3 3 G A 29 ? G A 29 . ? 1_555 ? 8 AC4 2 G A 1 ? G A 1 . ? 1_555 ? 9 AC4 2 MG B . ? MG A 200 . ? 1_555 ? 10 AC5 2 A A 8 ? A A 8 . ? 1_555 ? 11 AC5 2 U A 9 ? U A 9 . ? 1_555 ? 12 AC6 1 A A 28 ? A A 28 . ? 1_555 ? 13 AC7 2 G A 27 ? G A 27 . ? 6_555 ? 14 AC7 2 G A 27 ? G A 27 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 67 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 68 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.04 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 67 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 67 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 1.95 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 14 ? ? 0.057 'SIDE CHAIN' 2 1 U A 52 ? ? 0.090 'SIDE CHAIN' 3 1 C A 59 ? ? 0.079 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3R4F 'double helix' 3R4F 'a-form double helix' 3R4F 'hairpin loop' 3R4F 'bulge loop' 3R4F 'mismatched base pair' 3R4F 'triple helix' 3R4F 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 66 1_555 -0.295 -0.162 -0.523 -6.327 14.677 -8.383 1 A_G1:C66_A A 1 ? A 66 ? 19 1 1 A G 2 1_555 A C 65 1_555 0.017 -0.124 -0.371 -2.257 2.597 -1.859 2 A_G2:C65_A A 2 ? A 65 ? 19 1 1 A C 3 1_555 A G 64 1_555 0.121 -0.138 0.201 -6.667 -12.487 0.451 3 A_C3:G64_A A 3 ? A 64 ? 19 1 1 A G 4 1_555 A C 63 1_555 0.179 0.060 -0.354 -15.253 -4.262 -2.526 4 A_G4:C63_A A 4 ? A 63 ? 19 1 1 A G 47 1_555 A U 62 1_555 -1.140 0.051 -0.509 -8.808 -4.867 -4.849 5 A_G47:U62_A A 47 ? A 62 ? ? 1 1 A U 48 1_555 A A 61 1_555 0.169 -0.033 -0.284 -8.760 -16.136 3.791 6 A_U48:A61_A A 48 ? A 61 ? 20 1 1 A U 49 1_555 A A 60 1_555 -0.397 0.107 -0.097 -11.486 -13.865 -9.647 7 A_U49:A60_A A 49 ? A 60 ? 20 1 1 A G 50 1_555 A C 59 1_555 0.269 -0.052 0.070 -5.123 8.126 -0.840 8 A_G50:C59_A A 50 ? A 59 ? 19 1 1 A A 51 1_555 A U 58 1_555 0.527 -0.154 -0.197 13.122 -7.262 0.381 9 A_A51:U58_A A 51 ? A 58 ? 20 1 1 A U 52 1_555 A G 57 1_555 2.434 -0.399 -0.162 4.934 -15.054 -26.771 10 A_U52:G57_A A 52 ? A 57 ? ? ? 1 A U 5 1_555 A U 44 1_555 -2.208 -2.165 -1.537 22.719 -20.000 13.763 11 A_U5:U44_A A 5 ? A 44 ? 16 1 1 A G 6 1_555 A C 43 1_555 -0.379 -0.103 -0.967 -16.805 -14.285 0.942 12 A_G6:C43_A A 6 ? A 43 ? 19 1 1 A U 7 1_555 A A 42 1_555 -0.250 0.001 -1.048 4.530 -10.123 -0.456 13 A_U7:A42_A A 7 ? A 42 ? 20 1 1 A A 8 1_555 A U 41 1_555 -0.063 -0.172 -0.043 -10.686 -7.794 10.313 14 A_A8:U41_A A 8 ? A 41 ? 20 1 1 A U 9 1_555 A A 40 1_555 0.140 -0.284 0.408 4.431 6.186 0.811 15 A_U9:A40_A A 9 ? A 40 ? 20 1 1 A G 10 1_555 A C 39 1_555 -0.854 -0.267 0.218 15.351 8.477 -6.032 16 A_G10:C39_A A 10 ? A 39 ? 19 1 1 A U 11 1_555 A A 38 1_555 0.022 0.104 -0.485 8.665 -5.459 6.744 17 A_U11:A38_A A 11 ? A 38 ? 20 1 1 A G 12 1_555 A C 37 1_555 -0.172 0.131 -0.786 -11.038 -8.098 6.012 18 A_G12:C37_A A 12 ? A 37 ? 19 1 1 A G 13 1_555 A C 36 1_555 0.282 -0.012 -0.752 -15.943 -1.153 -9.110 19 A_G13:C36_A A 13 ? A 36 ? 19 1 1 A G 14 1_555 A C 35 1_555 0.319 -0.391 -1.558 -10.976 3.375 -1.060 20 A_G14:C35_A A 14 ? A 35 ? 19 1 1 A C 21 1_555 A G 34 1_555 0.003 -0.042 0.222 -3.151 -13.242 -7.958 21 A_C21:G34_A A 21 ? A 34 ? 19 1 1 A U 22 1_555 A A 33 1_555 -0.169 0.077 -0.161 4.810 -23.986 -1.706 22 A_U22:A33_A A 22 ? A 33 ? 20 1 1 A G 23 1_555 A C 32 1_555 -0.165 -0.050 -0.411 -15.059 -18.078 -4.812 23 A_G23:C32_A A 23 ? A 32 ? 19 1 1 A A 24 1_555 A U 31 1_555 0.097 -0.054 0.470 2.637 -3.789 7.063 24 A_A24:U31_A A 24 ? A 31 ? 20 1 1 A U 25 1_555 A U 30 1_555 1.984 -2.135 0.479 15.584 -15.916 8.018 25 A_U25:U30_A A 25 ? A 30 ? 16 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 66 1_555 A G 2 1_555 A C 65 1_555 0.406 -1.971 3.090 -2.310 8.761 35.837 -4.144 -0.913 2.524 13.965 3.682 36.928 1 AA_G1G2:C65C66_AA A 1 ? A 66 ? A 2 ? A 65 ? 1 A G 2 1_555 A C 65 1_555 A C 3 1_555 A G 64 1_555 0.249 -1.725 3.315 -1.257 0.106 33.822 -2.981 -0.632 3.299 0.183 2.160 33.845 2 AA_G2C3:G64C65_AA A 2 ? A 65 ? A 3 ? A 64 ? 1 A C 3 1_555 A G 64 1_555 A G 4 1_555 A C 63 1_555 0.252 -2.218 3.343 3.179 17.251 27.853 -6.423 0.014 1.729 32.121 -5.920 32.824 3 AA_C3G4:C63G64_AA A 3 ? A 64 ? A 4 ? A 63 ? 1 A G 4 1_555 A C 63 1_555 A G 47 1_555 A U 62 1_555 1.852 -2.436 3.146 0.934 8.374 15.447 -11.970 -5.611 1.711 28.552 -3.186 17.583 4 AA_G4G47:U62C63_AA A 4 ? A 63 ? A 47 ? A 62 ? 1 A G 47 1_555 A U 62 1_555 A U 48 1_555 A A 61 1_555 -0.050 -1.955 3.423 -3.233 -2.911 34.389 -2.803 -0.449 3.562 -4.899 5.441 34.655 5 AA_G47U48:A61U62_AA A 47 ? A 62 ? A 48 ? A 61 ? 1 A U 48 1_555 A A 61 1_555 A U 49 1_555 A A 60 1_555 -0.279 -1.508 3.328 -2.114 5.094 36.166 -3.098 0.157 3.105 8.147 3.382 36.570 6 AA_U48U49:A60A61_AA A 48 ? A 61 ? A 49 ? A 60 ? 1 A U 49 1_555 A A 60 1_555 A G 50 1_555 A C 59 1_555 0.334 -2.134 3.057 1.558 -2.821 31.752 -3.387 -0.335 3.242 -5.139 -2.839 31.911 7 AA_U49G50:C59A60_AA A 49 ? A 60 ? A 50 ? A 59 ? 1 A G 50 1_555 A C 59 1_555 A A 51 1_555 A U 58 1_555 0.425 -0.964 2.956 10.764 0.050 32.757 -1.636 0.834 2.944 0.087 -18.474 34.434 8 AA_G50A51:U58C59_AA A 50 ? A 59 ? A 51 ? A 58 ? 1 A A 51 1_555 A U 58 1_555 A U 52 1_555 A G 57 1_555 -0.664 -1.640 3.663 4.774 5.458 34.741 -3.548 1.839 3.259 9.020 -7.889 35.466 9 AA_A51U52:G57U58_AA A 51 ? A 58 ? A 52 ? A 57 ? 1 A U 5 1_555 A U 44 1_555 A G 6 1_555 A C 43 1_555 -0.101 -1.152 5.043 -4.045 10.851 32.079 -4.545 -0.788 4.413 18.885 7.039 34.053 10 AA_U5G6:C43U44_AA A 5 ? A 44 ? A 6 ? A 43 ? 1 A G 6 1_555 A C 43 1_555 A U 7 1_555 A A 42 1_555 -0.543 -1.579 2.913 -0.537 5.203 29.385 -3.988 0.960 2.610 10.156 1.047 29.837 11 AA_G6U7:A42C43_AA A 6 ? A 43 ? A 7 ? A 42 ? 1 A U 7 1_555 A A 42 1_555 A A 8 1_555 A U 41 1_555 0.542 -1.246 3.957 -3.507 4.509 27.284 -3.847 -2.107 3.612 9.428 7.333 27.865 12 AA_U7A8:U41A42_AA A 7 ? A 42 ? A 8 ? A 41 ? 1 A A 8 1_555 A U 41 1_555 A U 9 1_555 A A 40 1_555 0.066 -1.427 2.945 -2.529 3.946 40.815 -2.411 -0.336 2.792 5.636 3.612 41.072 13 AA_A8U9:A40U41_AA A 8 ? A 41 ? A 9 ? A 40 ? 1 A U 9 1_555 A A 40 1_555 A G 10 1_555 A C 39 1_555 0.310 -1.215 2.704 3.727 10.127 23.578 -4.845 0.094 2.041 23.283 -8.568 25.898 14 AA_U9G10:C39A40_AA A 9 ? A 40 ? A 10 ? A 39 ? 1 A G 10 1_555 A C 39 1_555 A U 11 1_555 A A 38 1_555 0.548 -1.935 3.241 3.118 14.037 37.825 -4.225 -0.478 2.437 20.759 -4.611 40.372 15 AA_G10U11:A38C39_AA A 10 ? A 39 ? A 11 ? A 38 ? 1 A U 11 1_555 A A 38 1_555 A G 12 1_555 A C 37 1_555 0.058 -1.243 3.622 1.145 21.700 28.916 -5.074 0.068 2.193 37.500 -1.978 36.032 16 AA_U11G12:C37A38_AA A 11 ? A 38 ? A 12 ? A 37 ? 1 A G 12 1_555 A C 37 1_555 A G 13 1_555 A C 36 1_555 -0.928 -1.805 3.594 -5.203 0.926 34.067 -3.207 0.667 3.643 1.568 8.815 34.463 17 AA_G12G13:C36C37_AA A 12 ? A 37 ? A 13 ? A 36 ? 1 A G 13 1_555 A C 36 1_555 A G 14 1_555 A C 35 1_555 0.272 -1.369 3.533 5.971 -2.382 33.784 -1.906 0.568 3.613 -4.054 -10.159 34.373 18 AA_G13G14:C35C36_AA A 13 ? A 36 ? A 14 ? A 35 ? 1 A C 21 1_555 A G 34 1_555 A U 22 1_555 A A 33 1_555 0.528 -1.748 3.193 -2.345 4.976 27.362 -4.720 -1.611 2.784 10.387 4.895 27.899 19 AA_C21U22:A33G34_AA A 21 ? A 34 ? A 22 ? A 33 ? 1 A U 22 1_555 A A 33 1_555 A G 23 1_555 A C 32 1_555 -0.232 -1.066 3.523 -2.096 20.832 36.045 -3.731 0.104 2.570 30.691 3.088 41.510 20 AA_U22G23:C32A33_AA A 22 ? A 33 ? A 23 ? A 32 ? 1 A G 23 1_555 A C 32 1_555 A A 24 1_555 A U 31 1_555 0.235 -2.129 2.840 -12.063 -6.074 25.798 -3.006 -2.924 2.868 -12.567 24.958 29.066 21 AA_G23A24:U31C32_AA A 23 ? A 32 ? A 24 ? A 31 ? 1 A A 24 1_555 A U 31 1_555 A U 25 1_555 A U 30 1_555 0.392 -0.832 2.994 -1.799 -4.894 45.719 -0.674 -0.646 3.046 -6.275 2.307 45.999 22 AA_A24U25:U30U31_AA A 24 ? A 31 ? A 25 ? A 30 ? # _atom_sites.entry_id 3R4F _atom_sites.fract_transf_matrix[1][1] 0.009597 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009597 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004789 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_