HEADER CELL ADHESION 17-MAR-11 3R4R TITLE CRYSTAL STRUCTURE OF A FIMBRIAL ASSEMBLY PROTEIN (BDI_3522) FROM TITLE 2 PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.38 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL FIMBRIAL ASSEMBLY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503; SOURCE 5 GENE: BDI_3522; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TRANSTHYRETIN-LIKE (ALSO KNOWN AS PREALBUMIN-LIKE), STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3R4R 1 REMARK SEQADV REVDAT 4 22-APR-20 3R4R 1 JRNL LINK REVDAT 3 08-NOV-17 3R4R 1 REMARK REVDAT 2 24-DEC-14 3R4R 1 TITLE REVDAT 1 30-MAR-11 3R4R 0 JRNL AUTH Q.XU,M.SHOJI,S.SHIBATA,M.NAITO,K.SATO,M.A.ELSLIGER, JRNL AUTH 2 J.C.GRANT,H.L.AXELROD,H.J.CHIU,C.L.FARR,L.JAROSZEWSKI, JRNL AUTH 3 M.W.KNUTH,A.M.DEACON,A.GODZIK,S.A.LESLEY,M.A.CURTIS, JRNL AUTH 4 K.NAKAYAMA,I.A.WILSON JRNL TITL A DISTINCT TYPE OF PILUS FROM THE HUMAN MICROBIOME. JRNL REF CELL V. 165 690 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27062925 JRNL DOI 10.1016/J.CELL.2016.03.016 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1448 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2892 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2311 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2735 REMARK 3 BIN R VALUE (WORKING SET) : 0.2268 REMARK 3 BIN FREE R VALUE : 0.3068 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.43 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78730 REMARK 3 B22 (A**2) : 11.02420 REMARK 3 B33 (A**2) : -12.81150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4159 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5656 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1867 ; 12.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 100 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 605 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4159 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 582 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4482 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.25 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.52 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 1.72 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|32 - A|315 } REMARK 3 ORIGIN FOR THE GROUP (A): 36.0963 14.9626 67.4677 REMARK 3 T TENSOR REMARK 3 T11: -0.3339 T22: 0.1040 REMARK 3 T33: -0.2492 T12: -0.0245 REMARK 3 T13: 0.0006 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 7.1519 L22: 1.3322 REMARK 3 L33: 2.0695 L12: -1.0686 REMARK 3 L13: 0.2359 L23: -0.2028 REMARK 3 S TENSOR REMARK 3 S11: -0.3089 S12: -0.7844 S13: -0.2418 REMARK 3 S21: 0.1635 S22: 0.2151 S23: -0.1544 REMARK 3 S31: 0.1398 S32: -0.1950 S33: 0.0938 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|34 - B|317 } REMARK 3 ORIGIN FOR THE GROUP (A): 38.9764 17.0838 100.1480 REMARK 3 T TENSOR REMARK 3 T11: -0.3595 T22: 0.0326 REMARK 3 T33: -0.3321 T12: 0.1973 REMARK 3 T13: -0.0358 T23: 0.1672 REMARK 3 L TENSOR REMARK 3 L11: 9.3034 L22: 1.5869 REMARK 3 L33: 5.0173 L12: 0.4804 REMARK 3 L13: 2.0156 L23: 0.5803 REMARK 3 S TENSOR REMARK 3 S11: 0.4322 S12: 0.9356 S13: -0.4951 REMARK 3 S21: -0.1006 S22: -0.0809 S23: -0.2016 REMARK 3 S31: 0.1301 S32: -0.3456 S33: -0.3513 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. SULFATE (SO4) FROM THE CRYSTALLIZATION CONDITION AND REMARK 3 ETHYLENE GLYCOL (EDO), USED AS A CRYOPROTECTANT HAVE BEEN REMARK 3 MODELED IN THE SOLVENT STRUCTURE. 4. NCS RESTRAINTS WERE APPLIED REMARK 3 USING BUSTERS LSSR RESTRAINT REPRESENTATION (-AUTONCS). 5. THE REMARK 3 REFINEMENT WAS RESTRAINED AGAINST THE MAD PHASES. 6. CHAIN REMARK 3 TRACING WAS PERFORMED FROM MAD DATA COLLECTED ON A CRYSTAL THAT REMARK 3 DIFFRACTED TO 2.64 ANGSTROMS RESOLUTION. THE RESULTING TRACE WAS REMARK 3 REFINED AGAINST DATA COLLECTED FROM A SECOND CRYSTAL THAT REMARK 3 DIFFRACTED TO 2.38 ANGSTROMS RESOLUTION. REMARK 4 REMARK 4 3R4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97954,0.97936 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 6, 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28498 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 36.492 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.88400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.32M AMMONIUM SULFATE, 0.2M LITHIUM REMARK 280 SULFATE, 0.1M CAPS PH 10.4, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.49150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.79950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.40050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.79950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.49150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.40050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ILE A 27 REMARK 465 GLY A 28 REMARK 465 PHE A 29 REMARK 465 ASP A 30 REMARK 465 THR A 31 REMARK 465 MSE A 47 REMARK 465 GLN A 48 REMARK 465 THR A 49 REMARK 465 LYS A 50 REMARK 465 ALA A 51 REMARK 465 SER A 52 REMARK 465 ASP A 53 REMARK 465 PRO A 54 REMARK 465 ASN A 55 REMARK 465 TYR A 56 REMARK 465 PRO A 316 REMARK 465 PHE A 317 REMARK 465 GLU A 318 REMARK 465 GLY B 0 REMARK 465 GLU B 24 REMARK 465 VAL B 25 REMARK 465 PRO B 26 REMARK 465 ILE B 27 REMARK 465 GLY B 28 REMARK 465 PHE B 29 REMARK 465 ASP B 30 REMARK 465 THR B 31 REMARK 465 ASP B 32 REMARK 465 GLU B 33 REMARK 465 MSE B 47 REMARK 465 GLN B 48 REMARK 465 THR B 49 REMARK 465 LYS B 50 REMARK 465 ALA B 51 REMARK 465 SER B 52 REMARK 465 ASP B 53 REMARK 465 PRO B 54 REMARK 465 ASN B 55 REMARK 465 TYR B 56 REMARK 465 LYS B 175 REMARK 465 TYR B 176 REMARK 465 ASN B 177 REMARK 465 GLN B 178 REMARK 465 ASP B 179 REMARK 465 ASN B 180 REMARK 465 ALA B 181 REMARK 465 GLU B 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 ASP A 46 CG OD1 OD2 REMARK 470 THR A 57 OG1 CG2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ARG A 111 CD NE CZ NH1 NH2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 VAL A 145 CG1 CG2 REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 TYR A 176 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 180 CG OD1 ND2 REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 215 CE NZ REMARK 470 VAL A 271 CG1 CG2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS A 282 CE NZ REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 LEU B 34 CG CD1 CD2 REMARK 470 ASP B 46 CG OD1 OD2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 ASP B 77 CG OD1 OD2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 THR B 112 OG1 CG2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 GLU B 116 CG CD OE1 OE2 REMARK 470 ASP B 117 CG OD1 OD2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 ASP B 146 CG OD1 OD2 REMARK 470 LYS B 156 CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 LEU B 174 CG CD1 CD2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 THR B 230 OG1 CG2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 VAL B 271 CG1 CG2 REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 THR B 298 OG1 CG2 REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 470 GLU B 301 CG CD OE1 OE2 REMARK 470 PHE B 317 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 115 57.34 -149.14 REMARK 500 GLU A 116 -140.15 60.82 REMARK 500 VAL A 159 -50.72 -130.59 REMARK 500 GLU A 255 152.16 -43.69 REMARK 500 SER A 296 36.81 -141.69 REMARK 500 THR A 298 -121.07 -148.08 REMARK 500 ILE B 97 -156.17 -133.12 REMARK 500 PHE B 113 -72.10 -135.87 REMARK 500 LYS B 115 -172.07 65.49 REMARK 500 ASN B 133 -179.04 -171.71 REMARK 500 VAL B 159 -52.48 -130.87 REMARK 500 SER B 296 -141.23 -154.73 REMARK 500 THR B 298 48.84 -83.22 REMARK 500 GLU B 299 -88.31 55.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 324 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394815 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 24-318 OF THE TARGET REMARK 999 SEQUENCE. DBREF 3R4R A 24 318 UNP A6LHQ9 A6LHQ9_PARD8 24 318 DBREF 3R4R B 24 318 UNP A6LHQ9 A6LHQ9_PARD8 24 318 SEQADV 3R4R GLY A 0 UNP A6LHQ9 EXPRESSION TAG SEQADV 3R4R GLY B 0 UNP A6LHQ9 EXPRESSION TAG SEQRES 1 A 296 GLY GLU VAL PRO ILE GLY PHE ASP THR ASP GLU LEU SER SEQRES 2 A 296 PHE ASP MSE SER LEU VAL LEU LEU THR GLY ASP MSE GLN SEQRES 3 A 296 THR LYS ALA SER ASP PRO ASN TYR THR TYR ALA THR THR SEQRES 4 A 296 GLU GLU LEU THR ILE GLN ASN CYS HIS VAL ALA VAL PHE SEQRES 5 A 296 ASP LYS ASP GLY LYS ARG ILE TYR PHE LYS ASN PHE TYR SEQRES 6 A 296 SER LYS ASP LEU GLY GLU MSE LYS THR ILE GLY ASN LEU SEQRES 7 A 296 SER GLY TYR GLU LEU GLN LEU GLU GLY VAL ARG THR PHE SEQRES 8 A 296 GLY LYS GLU ASP LYS LYS VAL SER VAL LEU VAL VAL ALA SEQRES 9 A 296 ASN ALA ASN ASN ALA ASN ASN SER PRO PHE ASP ASN LEU SEQRES 10 A 296 THR THR TYR ASP GLY VAL ASP ASN SER TYR THR ALA LYS SEQRES 11 A 296 THR ILE ALA LYS GLY PRO VAL THR ALA SER LEU LEU VAL SEQRES 12 A 296 LYS ILE GLY LYS SER GLU THR THR LEU LYS TYR ASN GLN SEQRES 13 A 296 ASP ASN ALA PRO VAL THR VAL SER LEU ILE GLN LEU SER SEQRES 14 A 296 ALA LYS ILE GLU TYR THR GLY VAL TYR LYS LYS GLU ASN SEQRES 15 A 296 GLY GLU LEU LEU GLU GLY PHE SER LEU THR LYS VAL ALA SEQRES 16 A 296 GLY LEU ASN ALA SER SER LYS ILE THR ILE PHE ASN THR SEQRES 17 A 296 SER ALA VAL GLU ASN GLY ALA PHE SER ASP LEU ALA TYR SEQRES 18 A 296 PRO THR THR LYS PRO VAL THR PHE TYR THR TYR GLU ILE SEQRES 19 A 296 SER ASP ALA PHE LYS GLU VAL ILE LEU SER VAL GLN SER SEQRES 20 A 296 GLY VAL GLU PRO LYS GLU TYR PRO PHE PRO ALA ASN LYS SEQRES 21 A 296 PHE ILE LYS GLY ASN TYR TYR ARG ILE LYS GLY LEU LYS SEQRES 22 A 296 SER SER THR GLU ILE GLU TRP VAL LEU GLU ASN VAL GLU SEQRES 23 A 296 ASP LYS GLU VAL THR LEU ASP PRO PHE GLU SEQRES 1 B 296 GLY GLU VAL PRO ILE GLY PHE ASP THR ASP GLU LEU SER SEQRES 2 B 296 PHE ASP MSE SER LEU VAL LEU LEU THR GLY ASP MSE GLN SEQRES 3 B 296 THR LYS ALA SER ASP PRO ASN TYR THR TYR ALA THR THR SEQRES 4 B 296 GLU GLU LEU THR ILE GLN ASN CYS HIS VAL ALA VAL PHE SEQRES 5 B 296 ASP LYS ASP GLY LYS ARG ILE TYR PHE LYS ASN PHE TYR SEQRES 6 B 296 SER LYS ASP LEU GLY GLU MSE LYS THR ILE GLY ASN LEU SEQRES 7 B 296 SER GLY TYR GLU LEU GLN LEU GLU GLY VAL ARG THR PHE SEQRES 8 B 296 GLY LYS GLU ASP LYS LYS VAL SER VAL LEU VAL VAL ALA SEQRES 9 B 296 ASN ALA ASN ASN ALA ASN ASN SER PRO PHE ASP ASN LEU SEQRES 10 B 296 THR THR TYR ASP GLY VAL ASP ASN SER TYR THR ALA LYS SEQRES 11 B 296 THR ILE ALA LYS GLY PRO VAL THR ALA SER LEU LEU VAL SEQRES 12 B 296 LYS ILE GLY LYS SER GLU THR THR LEU LYS TYR ASN GLN SEQRES 13 B 296 ASP ASN ALA PRO VAL THR VAL SER LEU ILE GLN LEU SER SEQRES 14 B 296 ALA LYS ILE GLU TYR THR GLY VAL TYR LYS LYS GLU ASN SEQRES 15 B 296 GLY GLU LEU LEU GLU GLY PHE SER LEU THR LYS VAL ALA SEQRES 16 B 296 GLY LEU ASN ALA SER SER LYS ILE THR ILE PHE ASN THR SEQRES 17 B 296 SER ALA VAL GLU ASN GLY ALA PHE SER ASP LEU ALA TYR SEQRES 18 B 296 PRO THR THR LYS PRO VAL THR PHE TYR THR TYR GLU ILE SEQRES 19 B 296 SER ASP ALA PHE LYS GLU VAL ILE LEU SER VAL GLN SER SEQRES 20 B 296 GLY VAL GLU PRO LYS GLU TYR PRO PHE PRO ALA ASN LYS SEQRES 21 B 296 PHE ILE LYS GLY ASN TYR TYR ARG ILE LYS GLY LEU LYS SEQRES 22 B 296 SER SER THR GLU ILE GLU TRP VAL LEU GLU ASN VAL GLU SEQRES 23 B 296 ASP LYS GLU VAL THR LEU ASP PRO PHE GLU MODRES 3R4R MSE A 38 MET SELENOMETHIONINE MODRES 3R4R MSE A 94 MET SELENOMETHIONINE MODRES 3R4R MSE B 38 MET SELENOMETHIONINE MODRES 3R4R MSE B 94 MET SELENOMETHIONINE HET MSE A 38 8 HET MSE A 94 8 HET MSE B 38 8 HET MSE B 94 8 HET SO4 A 319 5 HET SO4 A 320 5 HET EDO A 321 4 HET EDO A 322 4 HET EDO A 323 4 HET EDO A 325 4 HET EDO A 326 4 HET EDO B 324 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 11 HOH *79(H2 O) HELIX 1 1 THR A 60 THR A 65 1 6 HELIX 2 2 SER A 88 GLY A 92 1 5 HELIX 3 3 THR A 160 LEU A 164 5 5 HELIX 4 4 ASN A 281 PHE A 283 5 3 HELIX 5 5 THR B 60 THR B 65 1 6 HELIX 6 6 SER B 88 GLY B 92 1 5 HELIX 7 7 THR B 160 LEU B 164 5 5 HELIX 8 8 ASN B 281 PHE B 283 5 3 SHEET 1 A 4 LYS A 95 ILE A 97 0 SHEET 2 A 4 LEU A 100 THR A 112 -1 O GLY A 102 N LYS A 95 SHEET 3 A 4 LEU A 34 GLY A 45 -1 N LEU A 40 O LEU A 105 SHEET 4 A 4 VAL A 183 SER A 186 1 O VAL A 185 N VAL A 41 SHEET 1 B 5 ARG A 80 TYR A 87 0 SHEET 2 B 5 ASN A 68 PHE A 74 -1 N VAL A 73 O TYR A 82 SHEET 3 B 5 LYS A 118 ALA A 126 -1 O SER A 121 N PHE A 74 SHEET 4 B 5 LYS A 166 LEU A 174 -1 O LYS A 166 N ALA A 126 SHEET 5 B 5 ILE A 188 GLN A 189 -1 O ILE A 188 N ILE A 167 SHEET 1 C 2 THR A 153 ILE A 154 0 SHEET 2 C 2 SER A 223 LYS A 224 -1 O SER A 223 N ILE A 154 SHEET 1 D10 THR A 250 TYR A 254 0 SHEET 2 D10 SER A 191 LYS A 201 -1 N ILE A 194 O PHE A 251 SHEET 3 D10 TYR A 288 LYS A 295 1 O LYS A 295 N TYR A 200 SHEET 4 D10 ILE A 300 ASN A 306 -1 O VAL A 303 N LYS A 292 SHEET 5 D10 GLU A 311 LEU A 314 -1 O GLU A 311 N ASN A 306 SHEET 6 D10 GLU B 311 LEU B 314 -1 O LEU B 314 N VAL A 312 SHEET 7 D10 ILE B 300 ASN B 306 -1 N ASN B 306 O GLU B 311 SHEET 8 D10 TYR B 288 LYS B 295 -1 N LYS B 292 O VAL B 303 SHEET 9 D10 ALA B 192 LYS B 201 1 N TYR B 200 O LYS B 295 SHEET 10 D10 THR B 250 THR B 253 -1 O PHE B 251 N ILE B 194 SHEET 1 E 3 LEU A 213 ALA A 217 0 SHEET 2 E 3 GLU A 262 GLN A 268 -1 O SER A 266 N THR A 214 SHEET 3 E 3 PRO A 273 PRO A 279 -1 O TYR A 276 N LEU A 265 SHEET 1 F 2 LEU A 219 ASN A 220 0 SHEET 2 F 2 ASP A 240 LEU A 241 -1 O LEU A 241 N LEU A 219 SHEET 1 G 4 LYS B 95 ILE B 97 0 SHEET 2 G 4 LEU B 100 ARG B 111 -1 O GLY B 102 N LYS B 95 SHEET 3 G 4 SER B 35 THR B 44 -1 N LEU B 40 O LEU B 105 SHEET 4 G 4 VAL B 183 SER B 186 1 O VAL B 185 N VAL B 41 SHEET 1 H 5 ARG B 80 TYR B 87 0 SHEET 2 H 5 ASN B 68 PHE B 74 -1 N VAL B 73 O ILE B 81 SHEET 3 H 5 LYS B 118 ALA B 126 -1 O LEU B 123 N ALA B 72 SHEET 4 H 5 LYS B 166 LEU B 174 -1 O LYS B 166 N ALA B 126 SHEET 5 H 5 ILE B 188 GLN B 189 -1 O ILE B 188 N ILE B 167 SHEET 1 I 2 THR B 153 ILE B 154 0 SHEET 2 I 2 SER B 223 LYS B 224 -1 O SER B 223 N ILE B 154 SHEET 1 J 3 LEU B 213 ALA B 217 0 SHEET 2 J 3 GLU B 262 GLN B 268 -1 O SER B 266 N THR B 214 SHEET 3 J 3 PRO B 273 PRO B 279 -1 O TYR B 276 N LEU B 265 LINK C ASP A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N SER A 39 1555 1555 1.34 LINK C GLU A 93 N MSE A 94 1555 1555 1.34 LINK C MSE A 94 N LYS A 95 1555 1555 1.33 LINK C ASP B 37 N MSE B 38 1555 1555 1.33 LINK C MSE B 38 N SER B 39 1555 1555 1.35 LINK C GLU B 93 N MSE B 94 1555 1555 1.34 LINK C MSE B 94 N LYS B 95 1555 1555 1.34 SITE 1 AC1 4 PRO A 248 VAL A 249 THR A 250 HOH A 371 SITE 1 AC2 2 THR A 60 THR A 61 SITE 1 AC3 6 TYR A 58 GLN A 189 SER A 191 LYS A 193 SITE 2 AC3 6 GLY A 286 ASN A 287 SITE 1 AC4 5 PRO A 158 LEU A 241 PHE A 251 TYR A 252 SITE 2 AC4 5 HOH A 348 SITE 1 AC5 4 GLY A 218 PHE A 238 ASP A 240 GLU A 262 SITE 1 AC6 2 LYS A 152 ALA A 155 SITE 1 AC7 3 TYR A 142 LYS A 169 PHE A 228 SITE 1 AC8 6 PRO B 158 VAL B 159 LEU B 241 PRO B 244 SITE 2 AC8 6 PHE B 251 TYR B 252 CRYST1 72.983 84.801 113.599 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008803 0.00000