HEADER UNKNOWN FUNCTION 17-MAR-11 3R4V TITLE STRUCTURE OF THE PHAGE TUBULIN PHUZ-GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE 201PHI2-1; SOURCE 3 ORGANISM_TAXID: 198110 KEYWDS TUBULIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR D.A.AGARD,J.POGLIANO,J.A.KRAEMER,M.L.ERB,C.A.WADDLING,E.A.MONTABANA, AUTHOR 2 H.WANG,K.NGUYEN,S.PHAM REVDAT 4 03-APR-24 3R4V 1 REMARK REVDAT 3 21-FEB-24 3R4V 1 REMARK LINK REVDAT 2 23-JAN-13 3R4V 1 JRNL REVDAT 1 04-JUL-12 3R4V 0 JRNL AUTH J.A.KRAEMER,M.L.ERB,C.A.WADDLING,E.A.MONTABANA,E.A.ZEHR, JRNL AUTH 2 H.WANG,K.NGUYEN,D.S.PHAM,D.A.AGARD,J.POGLIANO JRNL TITL A PHAGE TUBULIN ASSEMBLES DYNAMIC FILAMENTS BY AN ATYPICAL JRNL TITL 2 MECHANISM TO CENTER VIRAL DNA WITHIN THE HOST CELL. JRNL REF CELL(CAMBRIDGE,MASS.) V. 149 1488 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22726436 JRNL DOI 10.1016/J.CELL.2012.04.034 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 37046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.390 REMARK 3 FREE R VALUE TEST SET COUNT : 1701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4169 - 3.5974 1.00 3966 182 0.1474 0.1826 REMARK 3 2 3.5974 - 2.8555 1.00 3830 176 0.1793 0.2359 REMARK 3 3 2.8555 - 2.4946 1.00 3769 173 0.1740 0.2432 REMARK 3 4 2.4946 - 2.2665 1.00 3756 173 0.1672 0.2093 REMARK 3 5 2.2665 - 2.1040 0.99 3718 170 0.1908 0.2424 REMARK 3 6 2.1040 - 1.9800 1.00 3696 169 0.1963 0.2685 REMARK 3 7 1.9800 - 1.8808 0.98 3657 167 0.2395 0.2586 REMARK 3 8 1.8808 - 1.7990 1.00 3717 171 0.2850 0.3202 REMARK 3 9 1.7990 - 1.7297 0.99 3671 168 0.3867 0.4195 REMARK 3 10 1.7297 - 1.6700 0.88 3238 149 0.4709 0.4219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 43.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30610 REMARK 3 B22 (A**2) : -1.08880 REMARK 3 B33 (A**2) : 0.78270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2614 REMARK 3 ANGLE : 1.064 3578 REMARK 3 CHIRALITY : 0.069 423 REMARK 3 PLANARITY : 0.004 468 REMARK 3 DIHEDRAL : 13.536 997 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:28) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2728 -5.5711 -2.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.4061 T22: 0.1572 REMARK 3 T33: 0.3149 T12: 0.0644 REMARK 3 T13: 0.1687 T23: 0.0839 REMARK 3 L TENSOR REMARK 3 L11: 2.1173 L22: 1.3719 REMARK 3 L33: 1.2566 L12: -1.6127 REMARK 3 L13: -0.4964 L23: -0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.5299 S12: -0.5204 S13: -0.7444 REMARK 3 S21: 0.6654 S22: 0.2147 S23: 0.2572 REMARK 3 S31: 0.5587 S32: -0.0094 S33: 0.2877 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 29:51) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6878 -4.1550 3.2019 REMARK 3 T TENSOR REMARK 3 T11: 0.6195 T22: 0.2882 REMARK 3 T33: 0.5371 T12: 0.0761 REMARK 3 T13: 0.4029 T23: 0.1488 REMARK 3 L TENSOR REMARK 3 L11: 1.2690 L22: 0.9718 REMARK 3 L33: 0.5913 L12: -0.7904 REMARK 3 L13: -0.0574 L23: 0.2137 REMARK 3 S TENSOR REMARK 3 S11: -0.6511 S12: -0.4966 S13: -0.9590 REMARK 3 S21: 0.9588 S22: 0.2319 S23: 0.8324 REMARK 3 S31: 0.7162 S32: -0.3121 S33: 0.4097 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 52:80) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8185 10.0064 3.7476 REMARK 3 T TENSOR REMARK 3 T11: 0.3896 T22: 0.2868 REMARK 3 T33: 0.1536 T12: 0.1141 REMARK 3 T13: 0.1145 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.0859 L22: 1.1469 REMARK 3 L33: 0.4257 L12: -0.0127 REMARK 3 L13: -0.4967 L23: -0.1743 REMARK 3 S TENSOR REMARK 3 S11: -0.3677 S12: -0.4997 S13: -0.1760 REMARK 3 S21: 0.6794 S22: 0.2427 S23: 0.2723 REMARK 3 S31: -0.1846 S32: -0.0240 S33: -0.0299 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 81:156) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3186 8.7132 -9.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.1051 REMARK 3 T33: 0.1158 T12: 0.0043 REMARK 3 T13: 0.0358 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.3884 L22: 1.8517 REMARK 3 L33: 2.0255 L12: -0.6810 REMARK 3 L13: -0.6266 L23: -0.1216 REMARK 3 S TENSOR REMARK 3 S11: -0.1628 S12: 0.0610 S13: -0.1290 REMARK 3 S21: 0.2936 S22: 0.1221 S23: 0.1639 REMARK 3 S31: -0.0467 S32: -0.0486 S33: 0.0455 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 157:171) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5459 -5.8913 -18.0343 REMARK 3 T TENSOR REMARK 3 T11: 0.3274 T22: 0.2453 REMARK 3 T33: 0.4107 T12: -0.1060 REMARK 3 T13: 0.0556 T23: -0.1837 REMARK 3 L TENSOR REMARK 3 L11: 3.1781 L22: 1.5334 REMARK 3 L33: 2.5907 L12: 1.2224 REMARK 3 L13: 0.4504 L23: 1.8105 REMARK 3 S TENSOR REMARK 3 S11: -0.4281 S12: 0.5071 S13: -0.9480 REMARK 3 S21: -0.1014 S22: -0.1082 S23: 0.6174 REMARK 3 S31: 0.4560 S32: -0.3734 S33: 0.2161 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 172:228) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8746 2.6023 -15.3157 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.2101 REMARK 3 T33: 0.2140 T12: -0.0015 REMARK 3 T13: 0.0102 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 1.7218 L22: 2.4274 REMARK 3 L33: 1.5986 L12: -0.2090 REMARK 3 L13: -1.2653 L23: -0.1533 REMARK 3 S TENSOR REMARK 3 S11: -0.2313 S12: -0.0337 S13: -0.0983 REMARK 3 S21: 0.0459 S22: 0.0766 S23: -0.4564 REMARK 3 S31: 0.1954 S32: 0.3559 S33: 0.1128 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 229:255) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9502 -4.8295 -20.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.2390 T22: 0.2576 REMARK 3 T33: 0.5284 T12: 0.0435 REMARK 3 T13: 0.1985 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.0284 L22: 1.7320 REMARK 3 L33: 1.7579 L12: -0.9498 REMARK 3 L13: -0.2366 L23: -0.3287 REMARK 3 S TENSOR REMARK 3 S11: -0.5240 S12: -0.0022 S13: -0.3900 REMARK 3 S21: -0.1632 S22: 0.0965 S23: -0.8310 REMARK 3 S31: 0.3687 S32: 0.2882 S33: 0.3389 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 256:270) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2149 -9.0946 -16.6464 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.2355 REMARK 3 T33: 0.4121 T12: 0.1094 REMARK 3 T13: 0.1909 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 1.4675 L22: 2.0974 REMARK 3 L33: 0.9980 L12: -0.4069 REMARK 3 L13: -0.2405 L23: -0.6256 REMARK 3 S TENSOR REMARK 3 S11: -0.6100 S12: -0.3769 S13: -0.7336 REMARK 3 S21: 0.0972 S22: 0.4498 S23: 0.1696 REMARK 3 S31: 0.5448 S32: 0.2006 S33: 0.2650 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 271:294) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1974 13.7919 -24.6332 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.2776 REMARK 3 T33: 0.1656 T12: -0.0451 REMARK 3 T13: -0.0000 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.7005 L22: 1.9201 REMARK 3 L33: 1.1768 L12: 1.0905 REMARK 3 L13: -0.1259 L23: -0.4090 REMARK 3 S TENSOR REMARK 3 S11: -0.1672 S12: 0.4701 S13: 0.3583 REMARK 3 S21: -0.0239 S22: 0.2308 S23: 0.3982 REMARK 3 S31: 0.0099 S32: -0.2414 S33: -0.0883 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 295:315) REMARK 3 ORIGIN FOR THE GROUP (A): -50.3636 21.0077 -12.4665 REMARK 3 T TENSOR REMARK 3 T11: 0.2593 T22: 0.1352 REMARK 3 T33: 0.1750 T12: -0.0109 REMARK 3 T13: 0.0394 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.5587 L22: 2.8373 REMARK 3 L33: 2.1234 L12: -0.1462 REMARK 3 L13: -0.3486 L23: -1.1590 REMARK 3 S TENSOR REMARK 3 S11: 0.1694 S12: 0.0555 S13: 0.4392 REMARK 3 S21: 0.5422 S22: 0.0456 S23: -0.1706 REMARK 3 S31: -0.4249 S32: 0.0258 S33: -0.1989 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064491. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115889 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.433 REMARK 200 RESOLUTION RANGE LOW (A) : 58.768 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: SEMET MODEL SOLVED USING MAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6000, 0.1M HEPES, 0.5M REMARK 280 AMMONIUM ACETATE, 0.05M MGCL2, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.53250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.39900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.96750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.39900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.53250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.96750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 55 REMARK 465 ALA A 56 REMARK 465 GLY A 57 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 187 N CA C O CB CG OD1 REMARK 480 ASP A 187 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -9.61 76.22 REMARK 500 ARG A 196 52.73 -97.43 REMARK 500 HIS A 201 76.26 -108.45 REMARK 500 HIS A 201 76.24 -108.45 REMARK 500 SER A 271 -9.75 -145.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 400 O1B REMARK 620 2 HOH A 488 O 90.6 REMARK 620 3 HOH A 489 O 92.2 91.0 REMARK 620 4 HOH A 496 O 174.1 94.8 90.1 REMARK 620 5 HOH A 522 O 91.9 175.5 85.2 82.8 REMARK 620 6 HOH A 523 O 90.0 89.9 177.6 87.7 93.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 DBREF 3R4V A 1 315 UNP B3FK34 B3FK34_9CAUD 1 315 SEQRES 1 A 315 MET PRO VAL LYS VAL CYS LEU ILE PHE ALA GLY GLY THR SEQRES 2 A 315 GLY MET ASN VAL ALA THR LYS LEU VAL ASP LEU GLY GLU SEQRES 3 A 315 ALA VAL HIS CYS PHE ASP THR CYS ASP LYS ASN VAL VAL SEQRES 4 A 315 ASP VAL HIS ARG SER VAL ASN VAL THR LEU THR LYS GLY SEQRES 5 A 315 THR ARG GLY ALA GLY GLY ASN ARG LYS VAL ILE LEU PRO SEQRES 6 A 315 LEU VAL ARG PRO GLN ILE PRO ALA LEU MET ASP THR ILE SEQRES 7 A 315 PRO GLU ALA ASP PHE TYR ILE VAL CYS TYR SER LEU GLY SEQRES 8 A 315 GLY GLY SER GLY SER VAL LEU GLY PRO LEU ILE THR GLY SEQRES 9 A 315 GLN LEU ALA ASP ARG LYS ALA SER PHE VAL SER PHE VAL SEQRES 10 A 315 VAL GLY ALA MET GLU SER THR ASP ASN LEU GLY ASN ASP SEQRES 11 A 315 ILE ASP THR MET LYS THR LEU GLU ALA ILE ALA VAL ASN SEQRES 12 A 315 LYS HIS LEU PRO ILE VAL VAL ASN TYR VAL PRO ASN THR SEQRES 13 A 315 GLN GLY ARG SER TYR GLU SER ILE ASN ASP GLU ILE ALA SEQRES 14 A 315 GLU LYS ILE ARG LYS VAL VAL LEU LEU VAL ASN GLN ASN SEQRES 15 A 315 HIS GLY ARG LEU ASP VAL HIS ASP VAL ALA ASN TRP VAL SEQRES 16 A 315 ARG PHE THR ASP LYS HIS ASN TYR LEU ILE PRO GLN VAL SEQRES 17 A 315 CYS GLU LEU HIS ILE GLU THR THR ARG LYS ASP ALA GLU SEQRES 18 A 315 ASN VAL PRO GLU ALA ILE SER GLN LEU SER LEU TYR LEU SEQRES 19 A 315 ASP PRO SER LYS GLU VAL ALA PHE GLY THR PRO ILE TYR SEQRES 20 A 315 ARG LYS VAL GLY ILE MET LYS VAL ASP ASP LEU ASP VAL SEQRES 21 A 315 THR ASP ASP GLN ILE HIS PHE VAL ILE ASN SER VAL GLY SEQRES 22 A 315 VAL VAL GLU ILE MET LYS THR ILE THR ASP SER LYS LEU SEQRES 23 A 315 GLU MET THR ARG GLN GLN SER LYS PHE THR GLN ARG ASN SEQRES 24 A 315 PRO ILE ILE ASP ALA ASP ASP ASN VAL ASP GLU ASP GLY SEQRES 25 A 315 MET VAL VAL HET GDP A 400 28 HET MG A 401 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *271(H2 O) HELIX 1 1 GLY A 11 THR A 19 1 9 HELIX 2 2 LYS A 20 GLU A 26 5 7 HELIX 3 3 VAL A 39 VAL A 45 5 7 HELIX 4 4 ASN A 59 ARG A 68 1 10 HELIX 5 5 GLN A 70 THR A 77 1 8 HELIX 6 6 SER A 94 ARG A 109 1 16 HELIX 7 7 SER A 123 HIS A 145 1 23 HELIX 8 8 SER A 160 VAL A 179 1 20 HELIX 9 9 ASP A 187 ARG A 196 1 10 HELIX 10 10 PHE A 197 LYS A 200 5 4 HELIX 11 11 THR A 216 ASN A 222 1 7 HELIX 12 12 ASP A 235 GLU A 239 5 5 HELIX 13 13 GLY A 273 PHE A 295 1 23 SHEET 1 A10 ASN A 46 LEU A 49 0 SHEET 2 A10 VAL A 28 ASP A 32 1 N CYS A 30 O THR A 48 SHEET 3 A10 CYS A 6 ALA A 10 1 N LEU A 7 O HIS A 29 SHEET 4 A10 TYR A 84 SER A 89 1 O ILE A 85 N ILE A 8 SHEET 5 A10 PHE A 113 GLY A 119 1 O PHE A 116 N VAL A 86 SHEET 6 A10 ILE A 148 PRO A 154 1 O ASN A 151 N SER A 115 SHEET 7 A10 VAL A 208 GLU A 214 1 O CYS A 209 N VAL A 150 SHEET 8 A10 GLN A 264 ASN A 270 -1 O HIS A 266 N GLU A 214 SHEET 9 A10 SER A 228 TYR A 233 -1 N LEU A 230 O PHE A 267 SHEET 10 A10 TYR A 247 ILE A 252 1 O GLY A 251 N SER A 231 LINK O1B GDP A 400 MG MG A 401 1555 1555 2.21 LINK MG MG A 401 O HOH A 488 1555 1555 2.27 LINK MG MG A 401 O HOH A 489 1555 1555 2.27 LINK MG MG A 401 O HOH A 496 1555 1555 2.29 LINK MG MG A 401 O HOH A 522 1555 1555 2.19 LINK MG MG A 401 O HOH A 523 1555 1555 2.25 SITE 1 AC1 26 GLY A 11 GLY A 12 THR A 13 ASN A 16 SITE 2 AC1 26 SER A 89 GLY A 92 GLY A 93 SER A 94 SITE 3 AC1 26 GLY A 95 VAL A 118 ALA A 120 GLU A 122 SITE 4 AC1 26 ASN A 126 ASN A 155 TYR A 161 ILE A 164 SITE 5 AC1 26 ASN A 165 HOH A 316 HOH A 320 HOH A 331 SITE 6 AC1 26 HOH A 337 HOH A 378 MG A 401 HOH A 488 SITE 7 AC1 26 HOH A 523 HOH A 582 SITE 1 AC2 6 GDP A 400 HOH A 488 HOH A 489 HOH A 496 SITE 2 AC2 6 HOH A 522 HOH A 523 CRYST1 47.065 75.935 92.798 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010776 0.00000