HEADER HYDROLASE 18-MAR-11 3R4Z TITLE CRYSTAL STRUCTURE OF ALPHA-NEOAGAROBIOSE HYDROLASE (ALPHA-NABH) IN TITLE 2 COMPLEX WITH ALPHA-D-GALACTOPYRANOSE FROM SACCHAROPHAGUS DEGRADANS 2- TITLE 3 40 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE FAMILY 32, N TERMINAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-NEOAGAROBIOSE HYDROLASE; COMPND 5 EC: 3.2.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPHAGUS DEGRADANS; SOURCE 3 ORGANISM_TAXID: 203122; SOURCE 4 STRAIN: 2-40; SOURCE 5 GENE: SDE_2657; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJL KEYWDS AGAR METABOLISM, NEOAGAROBIOSE, 3, 6-ANHYDRO-L-GALACTOSE, ALPHA-D- KEYWDS 2 GALACTOPYRANOSE, BIOENERGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LEE,J.Y.LEE,S.C.HA,D.H.SHIN,K.H.KIM,W.G.BANG,S.H.KIM,I.G.CHOI REVDAT 3 20-MAR-24 3R4Z 1 HETSYN REVDAT 2 29-JUL-20 3R4Z 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 SITE REVDAT 1 01-FEB-12 3R4Z 0 JRNL AUTH S.C.HA,S.LEE,J.LEE,H.T.KIM,H.J.KO,K.H.KIM,I.G.CHOI JRNL TITL CRYSTAL STRUCTURE OF A KEY ENZYME IN THE AGAROLYTIC PATHWAY, JRNL TITL 2 ALPHA-NEOAGAROBIOSE HYDROLASE FROM SACCHAROPHAGUS DEGRADANS JRNL TITL 3 2-40 JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 412 238 2011 JRNL REFN ISSN 0006-291X JRNL PMID 21810409 JRNL DOI 10.1016/J.BBRC.2011.07.073 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 114630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 352 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 693 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : 1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.202 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5956 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8092 ; 1.270 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 715 ; 6.694 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;34.298 ;24.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 927 ;12.589 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 814 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4686 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2655 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4000 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 675 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.133 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3643 ; 0.712 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5724 ; 1.190 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2714 ; 2.025 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2367 ; 3.000 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125096 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M SODIUM MALONATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.10350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.56400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.10350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.56400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 485 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 VAL A 6 REMARK 465 ASN A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 317 REMARK 465 SER A 318 REMARK 465 ASP A 319 REMARK 465 SER A 320 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 VAL B 6 REMARK 465 ASN B 7 REMARK 465 LYS B 8 REMARK 465 GLU B 317 REMARK 465 SER B 318 REMARK 465 ASP B 319 REMARK 465 SER B 320 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 135 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 -116.95 55.56 REMARK 500 LYS A 102 -18.09 80.05 REMARK 500 THR A 127 61.78 66.02 REMARK 500 ASN A 134 55.69 36.42 REMARK 500 THR A 186 164.78 68.18 REMARK 500 SER A 229 -157.54 -121.33 REMARK 500 ASN A 231 -162.40 -113.65 REMARK 500 HIS A 264 -104.59 -144.07 REMARK 500 THR A 281 -60.03 79.36 REMARK 500 ASP B 60 -119.63 57.11 REMARK 500 LYS B 102 -15.62 80.26 REMARK 500 THR B 127 62.33 68.99 REMARK 500 THR B 186 171.91 69.08 REMARK 500 SER B 229 -158.70 -119.57 REMARK 500 ASN B 231 -162.49 -114.83 REMARK 500 HIS B 264 -103.96 -144.45 REMARK 500 THR B 281 -56.91 77.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 134 GLY B 135 -36.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R4Y RELATED DB: PDB DBREF 3R4Z A 1 368 UNP Q21HB2 Q21HB2_SACD2 1 368 DBREF 3R4Z B 1 368 UNP Q21HB2 Q21HB2_SACD2 1 368 SEQADV 3R4Z HIS A 369 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS A 370 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS A 371 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS A 372 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS A 373 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS A 374 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS B 369 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS B 370 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS B 371 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS B 372 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS B 373 UNP Q21HB2 EXPRESSION TAG SEQADV 3R4Z HIS B 374 UNP Q21HB2 EXPRESSION TAG SEQRES 1 A 374 MET SER ASP SER LYS VAL ASN LYS LYS LEU SER LYS ALA SEQRES 2 A 374 SER LEU ARG ALA ILE GLU ARG GLY TYR ASP GLU LYS GLY SEQRES 3 A 374 PRO GLU TRP LEU PHE GLU PHE ASP ILE THR PRO LEU LYS SEQRES 4 A 374 GLY ASP LEU ALA TYR GLU GLU GLY VAL ILE ARG ARG ASP SEQRES 5 A 374 PRO SER ALA VAL LEU LYS VAL ASP ASP GLU TYR HIS VAL SEQRES 6 A 374 TRP TYR THR LYS GLY GLU GLY GLU THR VAL GLY PHE GLY SEQRES 7 A 374 SER ASP ASN PRO GLU ASP LYS VAL PHE PRO TRP ASP LYS SEQRES 8 A 374 THR GLU VAL TRP HIS ALA THR SER LYS ASP LYS ILE THR SEQRES 9 A 374 TRP LYS GLU ILE GLY PRO ALA ILE GLN ARG GLY ALA ALA SEQRES 10 A 374 GLY ALA TYR ASP ASP ARG ALA VAL PHE THR PRO GLU VAL SEQRES 11 A 374 LEU ARG HIS ASN GLY THR TYR TYR LEU VAL TYR GLN THR SEQRES 12 A 374 VAL LYS ALA PRO TYR LEU ASN ARG SER LEU GLU HIS ILE SEQRES 13 A 374 ALA ILE ALA TYR SER ASP SER PRO PHE GLY PRO TRP THR SEQRES 14 A 374 LYS SER ASP ALA PRO ILE LEU SER PRO GLU ASN ASP GLY SEQRES 15 A 374 VAL TRP ASP THR ASP GLU ASP ASN ARG PHE LEU VAL LYS SEQRES 16 A 374 GLU LYS GLY SER PHE ASP SER HIS LYS VAL HIS ASP PRO SEQRES 17 A 374 CYS LEU MET PHE PHE ASN ASN ARG PHE TYR LEU TYR TYR SEQRES 18 A 374 LYS GLY GLU THR MET GLY GLU SER MET ASN MET GLY GLY SEQRES 19 A 374 ARG GLU ILE LYS HIS GLY VAL ALA ILE ALA ASP SER PRO SEQRES 20 A 374 LEU GLY PRO TYR THR LYS SER GLU TYR ASN PRO ILE THR SEQRES 21 A 374 ASN SER GLY HIS GLU VAL ALA VAL TRP PRO TYR LYS GLY SEQRES 22 A 374 GLY MET ALA THR MET LEU THR THR ASP GLY PRO GLU LYS SEQRES 23 A 374 ASN THR CYS GLN TRP ALA GLU ASP GLY ILE ASN PHE ASP SEQRES 24 A 374 ILE MET SER HIS ILE LYS GLY ALA PRO GLU ALA VAL GLY SEQRES 25 A 374 PHE PHE ARG PRO GLU SER ASP SER ASP ASP PRO ILE SER SEQRES 26 A 374 GLY ILE GLU TRP GLY LEU SER HIS LYS TYR ASP ALA SER SEQRES 27 A 374 TRP ASN TRP ASN TYR LEU CYS PHE PHE LYS THR ARG ARG SEQRES 28 A 374 GLN VAL LEU ASP ALA GLY SER TYR GLN GLN THR GLY ASP SEQRES 29 A 374 SER GLY ALA VAL HIS HIS HIS HIS HIS HIS SEQRES 1 B 374 MET SER ASP SER LYS VAL ASN LYS LYS LEU SER LYS ALA SEQRES 2 B 374 SER LEU ARG ALA ILE GLU ARG GLY TYR ASP GLU LYS GLY SEQRES 3 B 374 PRO GLU TRP LEU PHE GLU PHE ASP ILE THR PRO LEU LYS SEQRES 4 B 374 GLY ASP LEU ALA TYR GLU GLU GLY VAL ILE ARG ARG ASP SEQRES 5 B 374 PRO SER ALA VAL LEU LYS VAL ASP ASP GLU TYR HIS VAL SEQRES 6 B 374 TRP TYR THR LYS GLY GLU GLY GLU THR VAL GLY PHE GLY SEQRES 7 B 374 SER ASP ASN PRO GLU ASP LYS VAL PHE PRO TRP ASP LYS SEQRES 8 B 374 THR GLU VAL TRP HIS ALA THR SER LYS ASP LYS ILE THR SEQRES 9 B 374 TRP LYS GLU ILE GLY PRO ALA ILE GLN ARG GLY ALA ALA SEQRES 10 B 374 GLY ALA TYR ASP ASP ARG ALA VAL PHE THR PRO GLU VAL SEQRES 11 B 374 LEU ARG HIS ASN GLY THR TYR TYR LEU VAL TYR GLN THR SEQRES 12 B 374 VAL LYS ALA PRO TYR LEU ASN ARG SER LEU GLU HIS ILE SEQRES 13 B 374 ALA ILE ALA TYR SER ASP SER PRO PHE GLY PRO TRP THR SEQRES 14 B 374 LYS SER ASP ALA PRO ILE LEU SER PRO GLU ASN ASP GLY SEQRES 15 B 374 VAL TRP ASP THR ASP GLU ASP ASN ARG PHE LEU VAL LYS SEQRES 16 B 374 GLU LYS GLY SER PHE ASP SER HIS LYS VAL HIS ASP PRO SEQRES 17 B 374 CYS LEU MET PHE PHE ASN ASN ARG PHE TYR LEU TYR TYR SEQRES 18 B 374 LYS GLY GLU THR MET GLY GLU SER MET ASN MET GLY GLY SEQRES 19 B 374 ARG GLU ILE LYS HIS GLY VAL ALA ILE ALA ASP SER PRO SEQRES 20 B 374 LEU GLY PRO TYR THR LYS SER GLU TYR ASN PRO ILE THR SEQRES 21 B 374 ASN SER GLY HIS GLU VAL ALA VAL TRP PRO TYR LYS GLY SEQRES 22 B 374 GLY MET ALA THR MET LEU THR THR ASP GLY PRO GLU LYS SEQRES 23 B 374 ASN THR CYS GLN TRP ALA GLU ASP GLY ILE ASN PHE ASP SEQRES 24 B 374 ILE MET SER HIS ILE LYS GLY ALA PRO GLU ALA VAL GLY SEQRES 25 B 374 PHE PHE ARG PRO GLU SER ASP SER ASP ASP PRO ILE SER SEQRES 26 B 374 GLY ILE GLU TRP GLY LEU SER HIS LYS TYR ASP ALA SER SEQRES 27 B 374 TRP ASN TRP ASN TYR LEU CYS PHE PHE LYS THR ARG ARG SEQRES 28 B 374 GLN VAL LEU ASP ALA GLY SER TYR GLN GLN THR GLY ASP SEQRES 29 B 374 SER GLY ALA VAL HIS HIS HIS HIS HIS HIS HET GLA A 375 12 HET GLA B 375 12 HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE FORMUL 3 GLA 2(C6 H12 O6) FORMUL 5 HOH *693(H2 O) HELIX 1 1 SER A 11 GLY A 21 1 11 HELIX 2 2 TYR A 22 LYS A 25 5 4 HELIX 3 3 ILE A 324 ILE A 327 5 4 HELIX 4 4 SER B 11 GLY B 21 1 11 HELIX 5 5 TYR B 22 LYS B 25 5 4 HELIX 6 6 ILE B 324 ILE B 327 5 4 SHEET 1 A 5 GLY A 312 PHE A 313 0 SHEET 2 A 5 TRP A 329 TYR A 335 -1 O LEU A 331 N GLY A 312 SHEET 3 A 5 ASN A 342 ARG A 351 -1 O PHE A 347 N GLY A 330 SHEET 4 A 5 PHE A 31 PRO A 37 -1 N THR A 36 O PHE A 346 SHEET 5 A 5 ALA A 367 HIS A 369 1 O VAL A 368 N ILE A 35 SHEET 1 B 5 LYS A 39 GLY A 40 0 SHEET 2 B 5 THR A 104 ILE A 112 1 O TRP A 105 N LYS A 39 SHEET 3 B 5 GLU A 93 SER A 99 -1 N VAL A 94 O ALA A 111 SHEET 4 B 5 GLU A 62 GLU A 71 -1 N TYR A 63 O SER A 99 SHEET 5 B 5 VAL A 48 ARG A 51 -1 N ILE A 49 O GLY A 70 SHEET 1 C 5 LYS A 39 GLY A 40 0 SHEET 2 C 5 THR A 104 ILE A 112 1 O TRP A 105 N LYS A 39 SHEET 3 C 5 GLU A 93 SER A 99 -1 N VAL A 94 O ALA A 111 SHEET 4 C 5 GLU A 62 GLU A 71 -1 N TYR A 63 O SER A 99 SHEET 5 C 5 LEU A 57 VAL A 59 -1 N VAL A 59 O GLU A 62 SHEET 1 D 4 ALA A 124 HIS A 133 0 SHEET 2 D 4 THR A 136 VAL A 144 -1 O GLN A 142 N PHE A 126 SHEET 3 D 4 HIS A 155 SER A 161 -1 O SER A 161 N TYR A 137 SHEET 4 D 4 THR A 169 LYS A 170 -1 O THR A 169 N TYR A 160 SHEET 1 E 2 VAL A 183 TRP A 184 0 SHEET 2 E 2 VAL A 194 GLU A 196 -1 O LYS A 195 N VAL A 183 SHEET 1 F 4 LYS A 204 PHE A 213 0 SHEET 2 F 4 ARG A 216 GLU A 224 -1 O LYS A 222 N HIS A 206 SHEET 3 F 4 ILE A 237 ALA A 244 -1 O ALA A 242 N LEU A 219 SHEET 4 F 4 THR A 252 LYS A 253 -1 O THR A 252 N ILE A 243 SHEET 1 G 2 MET A 230 ASN A 231 0 SHEET 2 G 2 GLY A 234 ARG A 235 -1 O GLY A 234 N ASN A 231 SHEET 1 H 4 VAL A 268 TYR A 271 0 SHEET 2 H 4 GLY A 274 LEU A 279 -1 O ALA A 276 N TRP A 269 SHEET 3 H 4 THR A 288 ALA A 292 -1 O GLN A 290 N THR A 277 SHEET 4 H 4 ASP A 299 HIS A 303 -1 O MET A 301 N CYS A 289 SHEET 1 I 5 GLY B 312 PHE B 313 0 SHEET 2 I 5 TRP B 329 TYR B 335 -1 O LEU B 331 N GLY B 312 SHEET 3 I 5 ASN B 342 ARG B 351 -1 O CYS B 345 N SER B 332 SHEET 4 I 5 PHE B 31 PRO B 37 -1 N THR B 36 O PHE B 346 SHEET 5 I 5 ALA B 367 HIS B 369 1 O VAL B 368 N ILE B 35 SHEET 1 J 5 LYS B 39 GLY B 40 0 SHEET 2 J 5 THR B 104 ILE B 112 1 O TRP B 105 N LYS B 39 SHEET 3 J 5 GLU B 93 SER B 99 -1 N VAL B 94 O ALA B 111 SHEET 4 J 5 GLU B 62 GLU B 71 -1 N TYR B 63 O SER B 99 SHEET 5 J 5 VAL B 48 ARG B 51 -1 N ILE B 49 O GLY B 70 SHEET 1 K 5 LYS B 39 GLY B 40 0 SHEET 2 K 5 THR B 104 ILE B 112 1 O TRP B 105 N LYS B 39 SHEET 3 K 5 GLU B 93 SER B 99 -1 N VAL B 94 O ALA B 111 SHEET 4 K 5 GLU B 62 GLU B 71 -1 N TYR B 63 O SER B 99 SHEET 5 K 5 LEU B 57 VAL B 59 -1 N VAL B 59 O GLU B 62 SHEET 1 L 4 ALA B 124 HIS B 133 0 SHEET 2 L 4 THR B 136 VAL B 144 -1 O GLN B 142 N PHE B 126 SHEET 3 L 4 HIS B 155 SER B 161 -1 O SER B 161 N TYR B 137 SHEET 4 L 4 THR B 169 LYS B 170 -1 O THR B 169 N TYR B 160 SHEET 1 M 2 VAL B 183 TRP B 184 0 SHEET 2 M 2 VAL B 194 GLU B 196 -1 O LYS B 195 N VAL B 183 SHEET 1 N 4 LYS B 204 PHE B 213 0 SHEET 2 N 4 ARG B 216 GLU B 224 -1 O TYR B 218 N MET B 211 SHEET 3 N 4 ILE B 237 ALA B 244 -1 O ALA B 242 N LEU B 219 SHEET 4 N 4 THR B 252 LYS B 253 -1 O THR B 252 N ILE B 243 SHEET 1 O 2 MET B 230 ASN B 231 0 SHEET 2 O 2 GLY B 234 ARG B 235 -1 O GLY B 234 N ASN B 231 SHEET 1 P 4 VAL B 268 TYR B 271 0 SHEET 2 P 4 GLY B 274 LEU B 279 -1 O ALA B 276 N TRP B 269 SHEET 3 P 4 THR B 288 ALA B 292 -1 O THR B 288 N LEU B 279 SHEET 4 P 4 ASP B 299 HIS B 303 -1 O MET B 301 N CYS B 289 CISPEP 1 ASN A 134 GLY A 135 0 -3.00 CISPEP 2 ALA A 146 PRO A 147 0 -0.53 CISPEP 3 GLY A 166 PRO A 167 0 1.35 CISPEP 4 GLY A 249 PRO A 250 0 0.47 CISPEP 5 ASN A 257 PRO A 258 0 -4.41 CISPEP 6 ALA B 146 PRO B 147 0 -5.12 CISPEP 7 GLY B 166 PRO B 167 0 0.97 CISPEP 8 GLY B 249 PRO B 250 0 4.11 CISPEP 9 ASN B 257 PRO B 258 0 -4.43 CRYST1 130.207 77.128 90.971 90.00 101.95 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007680 0.000000 0.001625 0.00000 SCALE2 0.000000 0.012965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011236 0.00000