data_3R5L # _entry.id 3R5L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3R5L RCSB RCSB064517 WWPDB D_1000064517 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3R5P 'same protein crystallized in a different space group' unspecified PDB 3R5R 'same protein with co-factor' unspecified PDB 3R5W 'same protein with co-factor' unspecified PDB 3R5Y 'homologous protein from N. farcinica' unspecified PDB 3R5Z 'homologous protein from N. farcinica' unspecified # _pdbx_database_status.entry_id 3R5L _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-18 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cellitti, S.E.' 1 'Shaffer, J.' 2 'Jones, D.H.' 3 'Mukherjee, T.' 4 'Gurumurthy, M.' 5 'Bursulaya, B.' 6 'Boshoff, H.I.M.' 7 'Choi, I.' 8 'Nayyar, A.' 9 'Lee, Y.S.' 10 'Cherian, J.' 11 'Niyomrattanakit, P.' 12 'Dick, T.' 13 'Manjunatha, U.H.' 14 'Barry, C.E.' 15 'Spraggon, G.' 16 'Geierstanger, B.H.' 17 # _citation.id primary _citation.title ;Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824. ; _citation.journal_abbrev Structure _citation.journal_volume 20 _citation.page_first 101 _citation.page_last 112 _citation.year 2012 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22244759 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.11.001 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cellitti, S.E.' 1 primary 'Shaffer, J.' 2 primary 'Jones, D.H.' 3 primary 'Mukherjee, T.' 4 primary 'Gurumurthy, M.' 5 primary 'Bursulaya, B.' 6 primary 'Boshoff, H.I.' 7 primary 'Choi, I.' 8 primary 'Nayyar, A.' 9 primary 'Lee, Y.S.' 10 primary 'Cherian, J.' 11 primary 'Niyomrattanakit, P.' 12 primary 'Dick, T.' 13 primary 'Manjunatha, U.H.' 14 primary 'Barry, C.E.' 15 primary 'Spraggon, G.' 16 primary 'Geierstanger, B.H.' 17 # _cell.length_a 67.167 _cell.length_b 71.045 _cell.length_c 50.528 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3R5L _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 3R5L _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Deazaflavin-dependent nitroreductase' 13808.342 1 1.-.-.- ? ? ? 2 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 3 water nat water 18.015 120 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GRNDGEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNP(MSE)WYLNLKANPKVQVQIKKE VLDLTARDATDEERAEYWPQLVT(MSE)YPSYQDYQSWTDRTIPIVVCEP ; _entity_poly.pdbx_seq_one_letter_code_can ;GRNDGEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDL TARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 ASN n 1 4 ASP n 1 5 GLY n 1 6 GLU n 1 7 GLY n 1 8 LEU n 1 9 GLY n 1 10 GLY n 1 11 THR n 1 12 PHE n 1 13 GLN n 1 14 LYS n 1 15 ILE n 1 16 PRO n 1 17 VAL n 1 18 ALA n 1 19 LEU n 1 20 LEU n 1 21 THR n 1 22 THR n 1 23 THR n 1 24 GLY n 1 25 ARG n 1 26 LYS n 1 27 THR n 1 28 GLY n 1 29 GLN n 1 30 PRO n 1 31 ARG n 1 32 VAL n 1 33 ASN n 1 34 PRO n 1 35 LEU n 1 36 TYR n 1 37 PHE n 1 38 LEU n 1 39 ARG n 1 40 ASP n 1 41 GLY n 1 42 GLY n 1 43 ARG n 1 44 VAL n 1 45 ILE n 1 46 VAL n 1 47 ALA n 1 48 ALA n 1 49 SER n 1 50 LYS n 1 51 GLY n 1 52 GLY n 1 53 ALA n 1 54 GLU n 1 55 LYS n 1 56 ASN n 1 57 PRO n 1 58 MSE n 1 59 TRP n 1 60 TYR n 1 61 LEU n 1 62 ASN n 1 63 LEU n 1 64 LYS n 1 65 ALA n 1 66 ASN n 1 67 PRO n 1 68 LYS n 1 69 VAL n 1 70 GLN n 1 71 VAL n 1 72 GLN n 1 73 ILE n 1 74 LYS n 1 75 LYS n 1 76 GLU n 1 77 VAL n 1 78 LEU n 1 79 ASP n 1 80 LEU n 1 81 THR n 1 82 ALA n 1 83 ARG n 1 84 ASP n 1 85 ALA n 1 86 THR n 1 87 ASP n 1 88 GLU n 1 89 GLU n 1 90 ARG n 1 91 ALA n 1 92 GLU n 1 93 TYR n 1 94 TRP n 1 95 PRO n 1 96 GLN n 1 97 LEU n 1 98 VAL n 1 99 THR n 1 100 MSE n 1 101 TYR n 1 102 PRO n 1 103 SER n 1 104 TYR n 1 105 GLN n 1 106 ASP n 1 107 TYR n 1 108 GLN n 1 109 SER n 1 110 TRP n 1 111 THR n 1 112 ASP n 1 113 ARG n 1 114 THR n 1 115 ILE n 1 116 PRO n 1 117 ILE n 1 118 VAL n 1 119 VAL n 1 120 CYS n 1 121 GLU n 1 122 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ddn, MT3651, Rv3547' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DDN_MYCTU _struct_ref.pdbx_db_accession P71854 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RNDGEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLT ARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP ; _struct_ref.pdbx_align_begin 31 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3R5L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 122 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P71854 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 151 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 31 _struct_ref_seq.pdbx_auth_seq_align_end 151 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3R5L _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P71854 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 30 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.entry_id 3R5L _exptl.method 'X-RAY DIFFRACTION' # loop_ _exptl_crystal.id _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 2.18 ? 43.65 ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, SITTING DROP' 6.0 277 '30% PEG 6000, 1M LiCl, 0.1 M MES, pH 6.0, vapor diffusion, sitting drop, temperature 277K' ? ? 2 'VAPOR DIFFUSION, SITTING DROP' 6.0 277 '30% PEG 6000, 0.1 M MES, pH 6.0, vapor diffusion, sitting drop, temperature 277K' ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 2 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315r' 2009-04-04 ? 2 CCD 'ADSC QUANTUM 315r' 2009-04-04 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' 'Double-crystal, Si(111)' 1 ? x-ray 2 'SINGLE WAVELENGTH' 'Double-crystal, Si(111)' 1 ? x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'ALS BEAMLINE 5.0.2' 0.979 ? ALS 5.0.2 2 SYNCHROTRON 'ALS BEAMLINE 5.0.2' 0.979 ? ALS 5.0.2 # _reflns.entry_id 3R5L _reflns.d_resolution_high 1.550 _reflns.d_resolution_low 50.000 _reflns.number_obs 17466 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_netI_over_sigmaI 27.5 _reflns.pdbx_chi_squared 3.302 _reflns.pdbx_redundancy 3.900 _reflns.percent_possible_obs 97.700 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 17466 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.550 1.610 ? ? ? 0.626 2.500 ? 4.248 3.300 ? 1735 99.500 1 1,2 1.610 1.670 ? ? ? 0.531 3.296 ? 1.326 4.000 ? 1777 99.700 2 1,2 1.670 1.750 ? ? ? 0.433 4.874 ? 1.617 4.200 ? 1757 99.500 3 1,2 1.750 1.840 ? ? ? 0.312 7.623 ? 1.897 4.200 ? 1738 99.300 4 1,2 1.840 1.950 ? ? ? 0.234 11.328 ? 2.480 4.200 ? 1756 98.300 5 1,2 1.950 2.100 ? ? ? 0.174 16.440 ? 3.122 4.100 ? 1722 97.700 6 1,2 2.100 2.320 ? ? ? 0.136 21.970 ? 4.020 3.900 ? 1714 96.200 7 1,2 2.320 2.650 ? ? ? 0.114 27.721 ? 5.085 3.800 ? 1720 96.300 8 1,2 2.650 3.340 ? ? ? 0.083 36.746 ? 5.472 3.600 ? 1738 95.500 9 1,2 3.340 50.000 ? ? ? 0.058 48.640 ? 4.849 3.800 ? 1809 95.200 10 1,2 # _refine.entry_id 3R5L _refine.ls_d_res_high 1.5500 _refine.ls_d_res_low 35.5230 _refine.pdbx_ls_sigma_F 0.030 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 92.6600 _refine.ls_number_reflns_obs 16624 _refine.ls_number_reflns_all 16640 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1815 _refine.ls_R_factor_R_work 0.1799 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2113 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.2100 _refine.ls_number_reflns_R_free 866 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.6062 _refine.solvent_model_param_bsol 59.9720 _refine.solvent_model_param_ksol 0.3810 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 5.3241 _refine.aniso_B[2][2] -4.0708 _refine.aniso_B[3][3] -1.2532 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'CCP4 monomer library' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 184.290 _refine.B_iso_min 10.080 _refine.occupancy_max 1.000 _refine.occupancy_min 0.360 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error 21.51 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 921 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 1053 _refine_hist.d_res_high 1.5500 _refine_hist.d_res_low 35.5230 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 980 0.015 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1339 1.734 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 147 0.126 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 171 0.010 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 373 20.837 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.55 1.6468 6 84.0000 2351 . 0.2654 0.3334 . 137 . 2488 2488 . 'X-RAY DIFFRACTION' 1.6468 1.7739 6 90.0000 2520 . 0.1958 0.2140 . 137 . 2657 2657 . 'X-RAY DIFFRACTION' 1.7739 1.9524 6 94.0000 2649 . 0.1693 0.2068 . 140 . 2789 2789 . 'X-RAY DIFFRACTION' 1.9524 2.2349 6 96.0000 2721 . 0.1715 0.1688 . 131 . 2852 2852 . 'X-RAY DIFFRACTION' 2.2349 2.8156 6 96.0000 2711 . 0.1748 0.2409 . 162 . 2873 2873 . 'X-RAY DIFFRACTION' 2.8156 35.5318 6 95.0000 2806 . 0.1715 0.1920 . 159 . 2965 2965 . 'X-RAY DIFFRACTION' # _struct.entry_id 3R5L _struct.title ;Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824 ; _struct.pdbx_descriptor 'Deazaflavin-dependent nitroreductase (E.C.1.-.-.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R5L _struct_keywords.text 'PA-824, split barrel-like fold, DUF385, Deazaflavin-dependent nitroreductase, nitroimidazoles, OXIDOREDUCTASE' _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 51 ? LYS A 55 ? GLY A 80 LYS A 84 5 ? 5 HELX_P HELX_P2 2 PRO A 57 ? ASN A 66 ? PRO A 86 ASN A 95 1 ? 10 HELX_P HELX_P3 3 THR A 86 ? TYR A 101 ? THR A 115 TYR A 130 1 ? 16 HELX_P HELX_P4 4 GLN A 108 ? ASP A 112 ? GLN A 137 ASP A 141 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PRO 57 C ? ? ? 1_555 A MSE 58 N ? ? A PRO 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A MSE 58 C ? ? ? 1_555 A TRP 59 N ? ? A MSE 87 A TRP 88 1_555 ? ? ? ? ? ? ? 1.316 ? covale3 covale ? ? A THR 99 C ? ? ? 1_555 A MSE 100 N ? ? A THR 128 A MSE 129 1_555 ? ? ? ? ? ? ? 1.337 ? covale4 covale ? ? A MSE 100 C ? ? ? 1_555 A TYR 101 N ? ? A MSE 129 A TYR 130 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 18 ? THR A 23 ? ALA A 47 THR A 52 A 2 PRO A 30 ? ASP A 40 ? PRO A 59 ASP A 69 A 3 ARG A 43 ? ALA A 47 ? ARG A 72 ALA A 76 A 4 ILE A 117 ? GLU A 121 ? ILE A 146 GLU A 150 A 5 GLU A 76 ? ASP A 84 ? GLU A 105 ASP A 113 A 6 LYS A 68 ? ILE A 73 ? LYS A 97 ILE A 102 A 7 ALA A 18 ? THR A 23 ? ALA A 47 THR A 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 18 ? N ALA A 47 O LEU A 35 ? O LEU A 64 A 2 3 N LEU A 38 ? N LEU A 67 O ILE A 45 ? O ILE A 74 A 3 4 N VAL A 46 ? N VAL A 75 O VAL A 118 ? O VAL A 147 A 4 5 O GLU A 121 ? O GLU A 150 N THR A 81 ? N THR A 110 A 5 6 O LEU A 78 ? O LEU A 107 N VAL A 71 ? N VAL A 100 A 6 7 O GLN A 70 ? O GLN A 99 N THR A 21 ? N THR A 50 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MES A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 PRO A 34 ? PRO A 63 . ? 1_555 ? 2 AC1 6 TYR A 36 ? TYR A 65 . ? 1_555 ? 3 AC1 6 SER A 49 ? SER A 78 . ? 1_555 ? 4 AC1 6 GLU A 88 ? GLU A 117 . ? 6_545 ? 5 AC1 6 SER A 103 ? SER A 132 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 347 . ? 6_545 ? # _atom_sites.entry_id 3R5L _atom_sites.fract_transf_matrix[1][1] 0.014888 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014076 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019791 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 30 ? ? ? A . n A 1 2 ARG 2 31 ? ? ? A . n A 1 3 ASN 3 32 ? ? ? A . n A 1 4 ASP 4 33 ? ? ? A . n A 1 5 GLY 5 34 ? ? ? A . n A 1 6 GLU 6 35 ? ? ? A . n A 1 7 GLY 7 36 36 GLY GLY A . n A 1 8 LEU 8 37 37 LEU LEU A . n A 1 9 GLY 9 38 38 GLY GLY A . n A 1 10 GLY 10 39 39 GLY GLY A . n A 1 11 THR 11 40 40 THR THR A . n A 1 12 PHE 12 41 41 PHE PHE A . n A 1 13 GLN 13 42 42 GLN GLN A . n A 1 14 LYS 14 43 43 LYS LYS A . n A 1 15 ILE 15 44 44 ILE ILE A . n A 1 16 PRO 16 45 45 PRO PRO A . n A 1 17 VAL 17 46 46 VAL VAL A . n A 1 18 ALA 18 47 47 ALA ALA A . n A 1 19 LEU 19 48 48 LEU LEU A . n A 1 20 LEU 20 49 49 LEU LEU A . n A 1 21 THR 21 50 50 THR THR A . n A 1 22 THR 22 51 51 THR THR A . n A 1 23 THR 23 52 52 THR THR A . n A 1 24 GLY 24 53 53 GLY GLY A . n A 1 25 ARG 25 54 54 ARG ARG A . n A 1 26 LYS 26 55 55 LYS LYS A . n A 1 27 THR 27 56 56 THR THR A . n A 1 28 GLY 28 57 57 GLY GLY A . n A 1 29 GLN 29 58 58 GLN GLN A . n A 1 30 PRO 30 59 59 PRO PRO A . n A 1 31 ARG 31 60 60 ARG ARG A . n A 1 32 VAL 32 61 61 VAL VAL A . n A 1 33 ASN 33 62 62 ASN ASN A . n A 1 34 PRO 34 63 63 PRO PRO A . n A 1 35 LEU 35 64 64 LEU LEU A . n A 1 36 TYR 36 65 65 TYR TYR A . n A 1 37 PHE 37 66 66 PHE PHE A . n A 1 38 LEU 38 67 67 LEU LEU A . n A 1 39 ARG 39 68 68 ARG ARG A . n A 1 40 ASP 40 69 69 ASP ASP A . n A 1 41 GLY 41 70 70 GLY GLY A . n A 1 42 GLY 42 71 71 GLY GLY A . n A 1 43 ARG 43 72 72 ARG ARG A . n A 1 44 VAL 44 73 73 VAL VAL A . n A 1 45 ILE 45 74 74 ILE ILE A . n A 1 46 VAL 46 75 75 VAL VAL A . n A 1 47 ALA 47 76 76 ALA ALA A . n A 1 48 ALA 48 77 77 ALA ALA A . n A 1 49 SER 49 78 78 SER SER A . n A 1 50 LYS 50 79 79 LYS LYS A . n A 1 51 GLY 51 80 80 GLY GLY A . n A 1 52 GLY 52 81 81 GLY GLY A . n A 1 53 ALA 53 82 82 ALA ALA A . n A 1 54 GLU 54 83 83 GLU GLU A . n A 1 55 LYS 55 84 84 LYS LYS A . n A 1 56 ASN 56 85 85 ASN ASN A . n A 1 57 PRO 57 86 86 PRO PRO A . n A 1 58 MSE 58 87 87 MSE MSE A . n A 1 59 TRP 59 88 88 TRP TRP A . n A 1 60 TYR 60 89 89 TYR TYR A . n A 1 61 LEU 61 90 90 LEU LEU A . n A 1 62 ASN 62 91 91 ASN ASN A . n A 1 63 LEU 63 92 92 LEU LEU A . n A 1 64 LYS 64 93 93 LYS LYS A . n A 1 65 ALA 65 94 94 ALA ALA A . n A 1 66 ASN 66 95 95 ASN ASN A . n A 1 67 PRO 67 96 96 PRO PRO A . n A 1 68 LYS 68 97 97 LYS LYS A . n A 1 69 VAL 69 98 98 VAL VAL A . n A 1 70 GLN 70 99 99 GLN GLN A . n A 1 71 VAL 71 100 100 VAL VAL A . n A 1 72 GLN 72 101 101 GLN GLN A . n A 1 73 ILE 73 102 102 ILE ILE A . n A 1 74 LYS 74 103 103 LYS LYS A . n A 1 75 LYS 75 104 104 LYS LYS A . n A 1 76 GLU 76 105 105 GLU GLU A . n A 1 77 VAL 77 106 106 VAL VAL A . n A 1 78 LEU 78 107 107 LEU LEU A . n A 1 79 ASP 79 108 108 ASP ASP A . n A 1 80 LEU 80 109 109 LEU LEU A . n A 1 81 THR 81 110 110 THR THR A . n A 1 82 ALA 82 111 111 ALA ALA A . n A 1 83 ARG 83 112 112 ARG ARG A . n A 1 84 ASP 84 113 113 ASP ASP A . n A 1 85 ALA 85 114 114 ALA ALA A . n A 1 86 THR 86 115 115 THR THR A . n A 1 87 ASP 87 116 116 ASP ASP A . n A 1 88 GLU 88 117 117 GLU GLU A . n A 1 89 GLU 89 118 118 GLU GLU A . n A 1 90 ARG 90 119 119 ARG ARG A . n A 1 91 ALA 91 120 120 ALA ALA A . n A 1 92 GLU 92 121 121 GLU GLU A . n A 1 93 TYR 93 122 122 TYR TYR A . n A 1 94 TRP 94 123 123 TRP TRP A . n A 1 95 PRO 95 124 124 PRO PRO A . n A 1 96 GLN 96 125 125 GLN GLN A . n A 1 97 LEU 97 126 126 LEU LEU A . n A 1 98 VAL 98 127 127 VAL VAL A . n A 1 99 THR 99 128 128 THR THR A . n A 1 100 MSE 100 129 129 MSE MSE A . n A 1 101 TYR 101 130 130 TYR TYR A . n A 1 102 PRO 102 131 131 PRO PRO A . n A 1 103 SER 103 132 132 SER SER A . n A 1 104 TYR 104 133 133 TYR TYR A . n A 1 105 GLN 105 134 134 GLN GLN A . n A 1 106 ASP 106 135 135 ASP ASP A . n A 1 107 TYR 107 136 136 TYR TYR A . n A 1 108 GLN 108 137 137 GLN GLN A . n A 1 109 SER 109 138 138 SER SER A . n A 1 110 TRP 110 139 139 TRP TRP A . n A 1 111 THR 111 140 140 THR THR A . n A 1 112 ASP 112 141 141 ASP ASP A . n A 1 113 ARG 113 142 142 ARG ARG A . n A 1 114 THR 114 143 143 THR THR A . n A 1 115 ILE 115 144 144 ILE ILE A . n A 1 116 PRO 116 145 145 PRO PRO A . n A 1 117 ILE 117 146 146 ILE ILE A . n A 1 118 VAL 118 147 147 VAL VAL A . n A 1 119 VAL 119 148 148 VAL VAL A . n A 1 120 CYS 120 149 149 CYS CYS A . n A 1 121 GLU 121 150 150 GLU GLU A . n A 1 122 PRO 122 151 151 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES 1 201 1 MES MES A . C 3 HOH 1 301 2 HOH HOH A . C 3 HOH 2 302 3 HOH HOH A . C 3 HOH 3 303 4 HOH HOH A . C 3 HOH 4 304 5 HOH HOH A . C 3 HOH 5 305 6 HOH HOH A . C 3 HOH 6 306 7 HOH HOH A . C 3 HOH 7 307 8 HOH HOH A . C 3 HOH 8 308 9 HOH HOH A . C 3 HOH 9 309 10 HOH HOH A . C 3 HOH 10 310 11 HOH HOH A . C 3 HOH 11 311 12 HOH HOH A . C 3 HOH 12 312 13 HOH HOH A . C 3 HOH 13 313 14 HOH HOH A . C 3 HOH 14 314 15 HOH HOH A . C 3 HOH 15 315 16 HOH HOH A . C 3 HOH 16 316 17 HOH HOH A . C 3 HOH 17 317 18 HOH HOH A . C 3 HOH 18 318 19 HOH HOH A . C 3 HOH 19 319 20 HOH HOH A . C 3 HOH 20 320 21 HOH HOH A . C 3 HOH 21 321 22 HOH HOH A . C 3 HOH 22 322 23 HOH HOH A . C 3 HOH 23 323 24 HOH HOH A . C 3 HOH 24 324 25 HOH HOH A . C 3 HOH 25 325 26 HOH HOH A . C 3 HOH 26 326 27 HOH HOH A . C 3 HOH 27 327 28 HOH HOH A . C 3 HOH 28 328 29 HOH HOH A . C 3 HOH 29 329 1 HOH HOH A . C 3 HOH 30 330 30 HOH HOH A . C 3 HOH 31 331 31 HOH HOH A . C 3 HOH 32 332 32 HOH HOH A . C 3 HOH 33 333 33 HOH HOH A . C 3 HOH 34 334 34 HOH HOH A . C 3 HOH 35 335 35 HOH HOH A . C 3 HOH 36 336 36 HOH HOH A . C 3 HOH 37 337 37 HOH HOH A . C 3 HOH 38 338 38 HOH HOH A . C 3 HOH 39 339 39 HOH HOH A . C 3 HOH 40 340 40 HOH HOH A . C 3 HOH 41 341 41 HOH HOH A . C 3 HOH 42 342 42 HOH HOH A . C 3 HOH 43 343 43 HOH HOH A . C 3 HOH 44 344 44 HOH HOH A . C 3 HOH 45 345 45 HOH HOH A . C 3 HOH 46 346 46 HOH HOH A . C 3 HOH 47 347 47 HOH HOH A . C 3 HOH 48 348 48 HOH HOH A . C 3 HOH 49 349 49 HOH HOH A . C 3 HOH 50 350 50 HOH HOH A . C 3 HOH 51 351 51 HOH HOH A . C 3 HOH 52 352 52 HOH HOH A . C 3 HOH 53 353 53 HOH HOH A . C 3 HOH 54 354 54 HOH HOH A . C 3 HOH 55 355 55 HOH HOH A . C 3 HOH 56 356 56 HOH HOH A . C 3 HOH 57 357 57 HOH HOH A . C 3 HOH 58 358 58 HOH HOH A . C 3 HOH 59 359 59 HOH HOH A . C 3 HOH 60 360 60 HOH HOH A . C 3 HOH 61 361 61 HOH HOH A . C 3 HOH 62 362 62 HOH HOH A . C 3 HOH 63 363 63 HOH HOH A . C 3 HOH 64 364 64 HOH HOH A . C 3 HOH 65 365 65 HOH HOH A . C 3 HOH 66 366 66 HOH HOH A . C 3 HOH 67 367 67 HOH HOH A . C 3 HOH 68 368 68 HOH HOH A . C 3 HOH 69 369 69 HOH HOH A . C 3 HOH 70 370 70 HOH HOH A . C 3 HOH 71 371 71 HOH HOH A . C 3 HOH 72 372 72 HOH HOH A . C 3 HOH 73 373 73 HOH HOH A . C 3 HOH 74 374 74 HOH HOH A . C 3 HOH 75 375 75 HOH HOH A . C 3 HOH 76 376 76 HOH HOH A . C 3 HOH 77 377 77 HOH HOH A . C 3 HOH 78 378 78 HOH HOH A . C 3 HOH 79 379 79 HOH HOH A . C 3 HOH 80 380 80 HOH HOH A . C 3 HOH 81 381 81 HOH HOH A . C 3 HOH 82 382 82 HOH HOH A . C 3 HOH 83 383 83 HOH HOH A . C 3 HOH 84 384 84 HOH HOH A . C 3 HOH 85 385 85 HOH HOH A . C 3 HOH 86 386 86 HOH HOH A . C 3 HOH 87 387 87 HOH HOH A . C 3 HOH 88 388 88 HOH HOH A . C 3 HOH 89 389 89 HOH HOH A . C 3 HOH 90 390 90 HOH HOH A . C 3 HOH 91 391 91 HOH HOH A . C 3 HOH 92 392 92 HOH HOH A . C 3 HOH 93 393 93 HOH HOH A . C 3 HOH 94 394 94 HOH HOH A . C 3 HOH 95 395 95 HOH HOH A . C 3 HOH 96 396 96 HOH HOH A . C 3 HOH 97 397 97 HOH HOH A . C 3 HOH 98 398 98 HOH HOH A . C 3 HOH 99 399 99 HOH HOH A . C 3 HOH 100 400 100 HOH HOH A . C 3 HOH 101 401 101 HOH HOH A . C 3 HOH 102 402 102 HOH HOH A . C 3 HOH 103 403 103 HOH HOH A . C 3 HOH 104 404 104 HOH HOH A . C 3 HOH 105 405 105 HOH HOH A . C 3 HOH 106 406 106 HOH HOH A . C 3 HOH 107 407 107 HOH HOH A . C 3 HOH 108 408 108 HOH HOH A . C 3 HOH 109 409 109 HOH HOH A . C 3 HOH 110 410 110 HOH HOH A . C 3 HOH 111 411 111 HOH HOH A . C 3 HOH 112 412 112 HOH HOH A . C 3 HOH 113 413 113 HOH HOH A . C 3 HOH 114 414 114 HOH HOH A . C 3 HOH 115 415 115 HOH HOH A . C 3 HOH 116 416 116 HOH HOH A . C 3 HOH 117 417 117 HOH HOH A . C 3 HOH 118 418 118 HOH HOH A . C 3 HOH 119 419 119 HOH HOH A . C 3 HOH 120 420 120 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 58 A MSE 87 ? MET SELENOMETHIONINE 2 A MSE 100 A MSE 129 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 305 ? C HOH . 2 1 A HOH 386 ? C HOH . 3 1 A HOH 401 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-18 2 'Structure model' 1 1 2012-03-21 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 18.5547 _pdbx_refine_tls.origin_y -9.7374 _pdbx_refine_tls.origin_z -11.8571 _pdbx_refine_tls.T[1][1] 0.1574 _pdbx_refine_tls.T[2][2] 0.0981 _pdbx_refine_tls.T[3][3] 0.0754 _pdbx_refine_tls.T[1][2] 0.0000 _pdbx_refine_tls.T[1][3] 0.0018 _pdbx_refine_tls.T[2][3] -0.0000 _pdbx_refine_tls.L[1][1] 0.3522 _pdbx_refine_tls.L[2][2] 0.7766 _pdbx_refine_tls.L[3][3] 0.8995 _pdbx_refine_tls.L[1][2] 0.0334 _pdbx_refine_tls.L[1][3] 0.1171 _pdbx_refine_tls.L[2][3] 0.5135 _pdbx_refine_tls.S[1][1] -0.0329 _pdbx_refine_tls.S[2][2] -0.0132 _pdbx_refine_tls.S[3][3] 0.0370 _pdbx_refine_tls.S[1][2] 0.0243 _pdbx_refine_tls.S[1][3] -0.0151 _pdbx_refine_tls.S[2][3] -0.0209 _pdbx_refine_tls.S[2][1] 0.0028 _pdbx_refine_tls.S[3][1] 0.0640 _pdbx_refine_tls.S[3][2] -0.0368 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 36 A 151 all ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 1 A 1 all ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 1 A 243 all ? ? ? ? ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 PHENIX 1.5_2 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 BOS . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 41 ? ? 46.57 -129.68 2 1 LYS A 103 ? ? 57.48 -120.04 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 30 ? A GLY 1 2 1 Y 1 A ARG 31 ? A ARG 2 3 1 Y 1 A ASN 32 ? A ASN 3 4 1 Y 1 A ASP 33 ? A ASP 4 5 1 Y 1 A GLY 34 ? A GLY 5 6 1 Y 1 A GLU 35 ? A GLU 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 3 water HOH #