HEADER OXIDOREDUCTASE 19-MAR-11 3R5R TITLE STRUCTURE OF DDN, THE DEAZAFLAVIN-DEPENDENT NITROREDUCTASE FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS INVOLVED IN BIOREDUCTIVE ACTIVATION OF PA- TITLE 3 824, WITH CO-FACTOR F420 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEAZAFLAVIN-DEPENDENT NITROREDUCTASE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 EC: 1.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: DDN, MT3651, RV3547; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PA-824, SPLIT BARREL-LIKE FOLD, DUF385, DEAZAFLAVIN-DEPENDENT KEYWDS 2 NITROREDUCTASE, CO-FACTOR, NITROIMIDAZOLES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.CELLITTI,J.SHAFFER,D.H.JONES,T.MUKHERJEE,M.GURUMURTHY, AUTHOR 2 B.BURSULAYA,H.I.M.BOSHOFF,I.CHOI,A.NAYYA,Y.S.LEE,J.CHERIAN, AUTHOR 3 P.NIYOMRATTANAKIT,T.DICK,U.H.MANJUNATHA,C.E.BARRY,G.SPRAGGON, AUTHOR 4 B.H.GEIERSTANGER REVDAT 4 13-SEP-23 3R5R 1 REMARK SEQADV REVDAT 3 08-NOV-17 3R5R 1 REMARK REVDAT 2 21-MAR-12 3R5R 1 JRNL REVDAT 1 18-JAN-12 3R5R 0 JRNL AUTH S.E.CELLITTI,J.SHAFFER,D.H.JONES,T.MUKHERJEE,M.GURUMURTHY, JRNL AUTH 2 B.BURSULAYA,H.I.BOSHOFF,I.CHOI,A.NAYYAR,Y.S.LEE,J.CHERIAN, JRNL AUTH 3 P.NIYOMRATTANAKIT,T.DICK,U.H.MANJUNATHA,C.E.BARRY, JRNL AUTH 4 G.SPRAGGON,B.H.GEIERSTANGER JRNL TITL STRUCTURE OF DDN, THE DEAZAFLAVIN-DEPENDENT NITROREDUCTASE JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS INVOLVED IN BIOREDUCTIVE JRNL TITL 3 ACTIVATION OF PA-824. JRNL REF STRUCTURE V. 20 101 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22244759 JRNL DOI 10.1016/J.STR.2011.11.001 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CCP4 MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 53828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6854 - 4.5256 0.97 5513 279 0.2159 0.2221 REMARK 3 2 4.5256 - 3.5925 0.96 5308 271 0.2026 0.2281 REMARK 3 3 3.5925 - 3.1385 0.95 5282 279 0.2133 0.2631 REMARK 3 4 3.1385 - 2.8516 0.95 5254 264 0.2362 0.2699 REMARK 3 5 2.8516 - 2.6472 0.94 5185 284 0.2363 0.2827 REMARK 3 6 2.6472 - 2.4912 0.92 5082 290 0.2397 0.2691 REMARK 3 7 2.4912 - 2.3664 0.92 5033 280 0.2351 0.2813 REMARK 3 8 2.3664 - 2.2634 0.90 4965 264 0.2358 0.2830 REMARK 3 9 2.2634 - 2.1763 0.88 4809 274 0.2398 0.3006 REMARK 3 10 2.1763 - 2.1010 0.84 4673 239 0.2624 0.3130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 46.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26140 REMARK 3 B22 (A**2) : -0.41410 REMARK 3 B33 (A**2) : 0.67550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.04180 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4860 REMARK 3 ANGLE : 1.039 6662 REMARK 3 CHIRALITY : 0.064 728 REMARK 3 PLANARITY : 0.004 834 REMARK 3 DIHEDRAL : 20.186 1850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -33.7867 8.8316 11.1862 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0371 REMARK 3 T33: 0.0511 T12: -0.0013 REMARK 3 T13: 0.0049 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.3012 L22: 0.0107 REMARK 3 L33: 0.0002 L12: 0.1674 REMARK 3 L13: 0.0263 L23: -0.0580 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0088 S13: -0.0262 REMARK 3 S21: 0.0106 S22: -0.0088 S23: 0.0181 REMARK 3 S31: 0.0266 S32: 0.0015 S33: 0.0091 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09; 10-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 5.0.2; 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 0.979 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220); SINGLE CRYSTAL, REMARK 200 CYLINDRICALLY BENT, SI(220) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56945 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.892 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3R5P (PRELIMINARY MODEL) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.4 M TRI-NA-CITRATE WITH REMARK 280 EQUIMOLAR PROTEIN AND F420, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.47350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.85750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.47350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.85750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 40 REMARK 465 PHE A 41 REMARK 465 GLN A 42 REMARK 465 GLY B 40 REMARK 465 PHE B 41 REMARK 465 GLN B 42 REMARK 465 GLY C 40 REMARK 465 PHE C 41 REMARK 465 GLN C 42 REMARK 465 GLY D 40 REMARK 465 PHE D 41 REMARK 465 GLN D 42 REMARK 465 GLY E 40 REMARK 465 PHE E 41 REMARK 465 GLN E 42 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 103 -110.28 52.77 REMARK 500 TYR A 130 81.61 -150.00 REMARK 500 LYS B 103 -119.55 45.69 REMARK 500 TYR B 130 83.34 -152.49 REMARK 500 LYS C 79 52.84 38.91 REMARK 500 LYS C 103 -119.52 51.01 REMARK 500 TYR C 130 87.57 -152.90 REMARK 500 LYS D 103 -118.51 52.70 REMARK 500 LYS E 103 -119.98 55.40 REMARK 500 TYR E 130 85.86 -153.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F42 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F42 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F42 C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F42 D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F42 E 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R5L RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT CO-FACTOR REMARK 900 RELATED ID: 3R5P RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT CO-FACTOR REMARK 900 RELATED ID: 3R5W RELATED DB: PDB REMARK 900 SAME PROTEIN AND CO-FACTOR CRYSTALLIZED IN A DIFFERENT SPACE GROUP REMARK 900 RELATED ID: 3R5Y RELATED DB: PDB REMARK 900 HOMOLOGOUS PROTEIN FROM N. FARCINICA REMARK 900 RELATED ID: 3R5Z RELATED DB: PDB REMARK 900 HOMOLOGOUS PROTEIN FROM N. FARCINICA DBREF 3R5R A 41 151 UNP P71854 DDN_MYCTU 41 151 DBREF 3R5R B 41 151 UNP P71854 DDN_MYCTU 41 151 DBREF 3R5R C 41 151 UNP P71854 DDN_MYCTU 41 151 DBREF 3R5R D 41 151 UNP P71854 DDN_MYCTU 41 151 DBREF 3R5R E 41 151 UNP P71854 DDN_MYCTU 41 151 SEQADV 3R5R GLY A 40 UNP P71854 EXPRESSION TAG SEQADV 3R5R GLY B 40 UNP P71854 EXPRESSION TAG SEQADV 3R5R GLY C 40 UNP P71854 EXPRESSION TAG SEQADV 3R5R GLY D 40 UNP P71854 EXPRESSION TAG SEQADV 3R5R GLY E 40 UNP P71854 EXPRESSION TAG SEQRES 1 A 112 GLY PHE GLN LYS ILE PRO VAL ALA LEU LEU THR THR THR SEQRES 2 A 112 GLY ARG LYS THR GLY GLN PRO ARG VAL ASN PRO LEU TYR SEQRES 3 A 112 PHE LEU ARG ASP GLY GLY ARG VAL ILE VAL ALA ALA SER SEQRES 4 A 112 LYS GLY GLY ALA GLU LYS ASN PRO MET TRP TYR LEU ASN SEQRES 5 A 112 LEU LYS ALA ASN PRO LYS VAL GLN VAL GLN ILE LYS LYS SEQRES 6 A 112 GLU VAL LEU ASP LEU THR ALA ARG ASP ALA THR ASP GLU SEQRES 7 A 112 GLU ARG ALA GLU TYR TRP PRO GLN LEU VAL THR MET TYR SEQRES 8 A 112 PRO SER TYR GLN ASP TYR GLN SER TRP THR ASP ARG THR SEQRES 9 A 112 ILE PRO ILE VAL VAL CYS GLU PRO SEQRES 1 B 112 GLY PHE GLN LYS ILE PRO VAL ALA LEU LEU THR THR THR SEQRES 2 B 112 GLY ARG LYS THR GLY GLN PRO ARG VAL ASN PRO LEU TYR SEQRES 3 B 112 PHE LEU ARG ASP GLY GLY ARG VAL ILE VAL ALA ALA SER SEQRES 4 B 112 LYS GLY GLY ALA GLU LYS ASN PRO MET TRP TYR LEU ASN SEQRES 5 B 112 LEU LYS ALA ASN PRO LYS VAL GLN VAL GLN ILE LYS LYS SEQRES 6 B 112 GLU VAL LEU ASP LEU THR ALA ARG ASP ALA THR ASP GLU SEQRES 7 B 112 GLU ARG ALA GLU TYR TRP PRO GLN LEU VAL THR MET TYR SEQRES 8 B 112 PRO SER TYR GLN ASP TYR GLN SER TRP THR ASP ARG THR SEQRES 9 B 112 ILE PRO ILE VAL VAL CYS GLU PRO SEQRES 1 C 112 GLY PHE GLN LYS ILE PRO VAL ALA LEU LEU THR THR THR SEQRES 2 C 112 GLY ARG LYS THR GLY GLN PRO ARG VAL ASN PRO LEU TYR SEQRES 3 C 112 PHE LEU ARG ASP GLY GLY ARG VAL ILE VAL ALA ALA SER SEQRES 4 C 112 LYS GLY GLY ALA GLU LYS ASN PRO MET TRP TYR LEU ASN SEQRES 5 C 112 LEU LYS ALA ASN PRO LYS VAL GLN VAL GLN ILE LYS LYS SEQRES 6 C 112 GLU VAL LEU ASP LEU THR ALA ARG ASP ALA THR ASP GLU SEQRES 7 C 112 GLU ARG ALA GLU TYR TRP PRO GLN LEU VAL THR MET TYR SEQRES 8 C 112 PRO SER TYR GLN ASP TYR GLN SER TRP THR ASP ARG THR SEQRES 9 C 112 ILE PRO ILE VAL VAL CYS GLU PRO SEQRES 1 D 112 GLY PHE GLN LYS ILE PRO VAL ALA LEU LEU THR THR THR SEQRES 2 D 112 GLY ARG LYS THR GLY GLN PRO ARG VAL ASN PRO LEU TYR SEQRES 3 D 112 PHE LEU ARG ASP GLY GLY ARG VAL ILE VAL ALA ALA SER SEQRES 4 D 112 LYS GLY GLY ALA GLU LYS ASN PRO MET TRP TYR LEU ASN SEQRES 5 D 112 LEU LYS ALA ASN PRO LYS VAL GLN VAL GLN ILE LYS LYS SEQRES 6 D 112 GLU VAL LEU ASP LEU THR ALA ARG ASP ALA THR ASP GLU SEQRES 7 D 112 GLU ARG ALA GLU TYR TRP PRO GLN LEU VAL THR MET TYR SEQRES 8 D 112 PRO SER TYR GLN ASP TYR GLN SER TRP THR ASP ARG THR SEQRES 9 D 112 ILE PRO ILE VAL VAL CYS GLU PRO SEQRES 1 E 112 GLY PHE GLN LYS ILE PRO VAL ALA LEU LEU THR THR THR SEQRES 2 E 112 GLY ARG LYS THR GLY GLN PRO ARG VAL ASN PRO LEU TYR SEQRES 3 E 112 PHE LEU ARG ASP GLY GLY ARG VAL ILE VAL ALA ALA SER SEQRES 4 E 112 LYS GLY GLY ALA GLU LYS ASN PRO MET TRP TYR LEU ASN SEQRES 5 E 112 LEU LYS ALA ASN PRO LYS VAL GLN VAL GLN ILE LYS LYS SEQRES 6 E 112 GLU VAL LEU ASP LEU THR ALA ARG ASP ALA THR ASP GLU SEQRES 7 E 112 GLU ARG ALA GLU TYR TRP PRO GLN LEU VAL THR MET TYR SEQRES 8 E 112 PRO SER TYR GLN ASP TYR GLN SER TRP THR ASP ARG THR SEQRES 9 E 112 ILE PRO ILE VAL VAL CYS GLU PRO HET F42 A 1 53 HET F42 B 1 53 HET F42 C 1 53 HET F42 D 1 53 HET F42 E 1 53 HETNAM F42 COENZYME F420 FORMUL 6 F42 5(C29 H36 N5 O18 P) FORMUL 11 HOH *438(H2 O) HELIX 1 1 SER A 78 ALA A 82 5 5 HELIX 2 2 PRO A 86 ASN A 95 1 10 HELIX 3 3 THR A 115 TYR A 130 1 16 HELIX 4 4 PRO A 131 TRP A 139 1 9 HELIX 5 5 SER B 78 ALA B 82 5 5 HELIX 6 6 PRO B 86 ASN B 95 1 10 HELIX 7 7 THR B 115 TYR B 130 1 16 HELIX 8 8 PRO B 131 TRP B 139 1 9 HELIX 9 9 SER C 78 ALA C 82 5 5 HELIX 10 10 PRO C 86 ASN C 95 1 10 HELIX 11 11 THR C 115 TYR C 130 1 16 HELIX 12 12 PRO C 131 TRP C 139 1 9 HELIX 13 13 SER D 78 ALA D 82 5 5 HELIX 14 14 PRO D 86 ASN D 95 1 10 HELIX 15 15 THR D 115 TYR D 130 1 16 HELIX 16 16 PRO D 131 TRP D 139 1 9 HELIX 17 17 SER E 78 ALA E 82 5 5 HELIX 18 18 PRO E 86 ASN E 95 1 10 HELIX 19 19 THR E 115 TYR E 130 1 16 HELIX 20 20 PRO E 131 TRP E 139 1 9 SHEET 1 A 7 PRO A 59 LEU A 64 0 SHEET 2 A 7 ALA A 47 THR A 52 -1 N ALA A 47 O LEU A 64 SHEET 3 A 7 LYS A 97 ILE A 102 -1 O GLN A 99 N THR A 50 SHEET 4 A 7 GLU A 105 ASP A 113 -1 O LEU A 107 N VAL A 100 SHEET 5 A 7 ILE A 146 GLU A 150 -1 O GLU A 150 N THR A 110 SHEET 6 A 7 ARG A 72 ALA A 76 -1 N VAL A 73 O CYS A 149 SHEET 7 A 7 LEU A 67 ASP A 69 -1 N LEU A 67 O ILE A 74 SHEET 1 B 7 PRO B 59 LEU B 64 0 SHEET 2 B 7 ALA B 47 THR B 52 -1 N ALA B 47 O LEU B 64 SHEET 3 B 7 LYS B 97 ILE B 102 -1 O GLN B 99 N THR B 50 SHEET 4 B 7 GLU B 105 ASP B 113 -1 O LEU B 107 N VAL B 100 SHEET 5 B 7 ILE B 146 GLU B 150 -1 O VAL B 148 N ARG B 112 SHEET 6 B 7 ARG B 72 ALA B 76 -1 N VAL B 75 O VAL B 147 SHEET 7 B 7 LEU B 67 ASP B 69 -1 N LEU B 67 O ILE B 74 SHEET 1 C 7 PRO C 59 LEU C 64 0 SHEET 2 C 7 ALA C 47 THR C 52 -1 N ALA C 47 O LEU C 64 SHEET 3 C 7 LYS C 97 ILE C 102 -1 O GLN C 99 N THR C 50 SHEET 4 C 7 GLU C 105 ASP C 113 -1 O LEU C 107 N VAL C 100 SHEET 5 C 7 ILE C 146 GLU C 150 -1 O VAL C 148 N ARG C 112 SHEET 6 C 7 ARG C 72 ALA C 76 -1 N VAL C 73 O CYS C 149 SHEET 7 C 7 LEU C 67 ASP C 69 -1 N LEU C 67 O ILE C 74 SHEET 1 D 7 PRO D 59 LEU D 64 0 SHEET 2 D 7 ALA D 47 THR D 52 -1 N ALA D 47 O LEU D 64 SHEET 3 D 7 LYS D 97 ILE D 102 -1 O GLN D 99 N THR D 50 SHEET 4 D 7 GLU D 105 ASP D 113 -1 O LEU D 109 N VAL D 98 SHEET 5 D 7 ILE D 146 GLU D 150 -1 O GLU D 150 N THR D 110 SHEET 6 D 7 ARG D 72 ALA D 76 -1 N VAL D 75 O VAL D 147 SHEET 7 D 7 LEU D 67 ASP D 69 -1 N LEU D 67 O ILE D 74 SHEET 1 E 7 PRO E 59 LEU E 64 0 SHEET 2 E 7 ALA E 47 THR E 52 -1 N THR E 51 O ARG E 60 SHEET 3 E 7 LYS E 97 ILE E 102 -1 O GLN E 99 N THR E 50 SHEET 4 E 7 GLU E 105 ASP E 113 -1 O LEU E 107 N VAL E 100 SHEET 5 E 7 ILE E 146 GLU E 150 -1 O VAL E 148 N ARG E 112 SHEET 6 E 7 ARG E 72 ALA E 76 -1 N VAL E 73 O CYS E 149 SHEET 7 E 7 LEU E 67 ASP E 69 -1 N LEU E 67 O ILE E 74 SITE 1 AC1 25 HOH A 32 GLY A 53 ARG A 54 LYS A 55 SITE 2 AC1 25 THR A 56 ARG A 60 PRO A 63 LEU A 64 SITE 3 AC1 25 TYR A 65 ALA A 76 SER A 78 LYS A 79 SITE 4 AC1 25 PRO A 86 MET A 87 TRP A 88 ASN A 91 SITE 5 AC1 25 TYR A 133 HOH A 155 HOH A 173 HOH A 175 SITE 6 AC1 25 HOH A 202 HOH A 404 PRO C 45 VAL C 46 SITE 7 AC1 25 LYS C 104 SITE 1 AC2 30 HOH B 35 GLY B 53 ARG B 54 LYS B 55 SITE 2 AC2 30 THR B 56 ARG B 60 ASN B 62 PRO B 63 SITE 3 AC2 30 LEU B 64 TYR B 65 ALA B 76 SER B 78 SITE 4 AC2 30 LYS B 79 PRO B 86 MET B 87 TRP B 88 SITE 5 AC2 30 ASN B 91 TYR B 133 HOH B 155 HOH B 172 SITE 6 AC2 30 HOH B 173 HOH B 276 HOH B 296 HOH B 332 SITE 7 AC2 30 HOH B 347 HOH B 416 HOH B 418 PRO D 45 SITE 8 AC2 30 VAL D 46 LYS D 104 SITE 1 AC3 29 PRO A 45 VAL A 46 HOH C 23 HOH C 28 SITE 2 AC3 29 GLY C 53 ARG C 54 LYS C 55 THR C 56 SITE 3 AC3 29 ARG C 60 ASN C 62 PRO C 63 LEU C 64 SITE 4 AC3 29 TYR C 65 ALA C 76 SER C 78 LYS C 79 SITE 5 AC3 29 PRO C 86 MET C 87 TRP C 88 ASN C 91 SITE 6 AC3 29 TYR C 133 HOH C 156 HOH C 162 HOH C 184 SITE 7 AC3 29 HOH C 283 HOH C 397 HOH C 400 HOH C 411 SITE 8 AC3 29 HOH C 427 SITE 1 AC4 26 PRO B 45 VAL B 46 GLY D 53 ARG D 54 SITE 2 AC4 26 LYS D 55 THR D 56 ARG D 60 ASN D 62 SITE 3 AC4 26 PRO D 63 LEU D 64 TYR D 65 ALA D 76 SITE 4 AC4 26 SER D 78 LYS D 79 PRO D 86 MET D 87 SITE 5 AC4 26 TRP D 88 ASN D 91 TYR D 133 HOH D 156 SITE 6 AC4 26 HOH D 178 HOH D 185 HOH D 208 HOH D 241 SITE 7 AC4 26 HOH D 319 HOH D 436 SITE 1 AC5 28 HOH E 16 PRO E 45 VAL E 46 GLY E 53 SITE 2 AC5 28 ARG E 54 LYS E 55 THR E 56 ARG E 60 SITE 3 AC5 28 ASN E 62 PRO E 63 LEU E 64 TYR E 65 SITE 4 AC5 28 ALA E 76 SER E 78 LYS E 79 PRO E 86 SITE 5 AC5 28 MET E 87 TRP E 88 ASN E 91 LYS E 104 SITE 6 AC5 28 TYR E 133 HOH E 154 HOH E 161 HOH E 168 SITE 7 AC5 28 HOH E 242 HOH E 383 HOH E 413 HOH E 420 CRYST1 146.947 91.715 86.499 90.00 119.53 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006805 0.000000 0.003855 0.00000 SCALE2 0.000000 0.010903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013287 0.00000