HEADER ISOMERASE 22-MAR-11 3R6O TITLE CRYSTAL STRUCTURE OF A PROBABLE 2-HYDROXYHEPTA-2,4-DIENE-1, 7- TITLE 2 DIOATEISOMERASE FROM MYCOBACTERIUM ABSCESSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-HYDROXYHEPTA-2,4-DIENE-1, 7-DIOATEISOMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 561007; SOURCE 4 STRAIN: ATCC 19977 / DSM 44196; SOURCE 5 GENE: MAB_0915C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, 2-HYDROXYHEPTA-2, 4-DIENE-1, 7-DIOATEISOMERASE, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3R6O 1 REMARK SEQADV REVDAT 2 22-APR-15 3R6O 1 JRNL VERSN REVDAT 1 08-JUN-11 3R6O 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1159 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1526 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.38000 REMARK 3 B22 (A**2) : -17.38000 REMARK 3 B33 (A**2) : 34.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.834 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1993 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1331 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2725 ; 1.499 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3245 ; 0.931 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 6.601 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;30.472 ;22.603 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 278 ;14.446 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2238 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 395 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1327 ; 0.336 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 529 ; 0.061 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2124 ; 0.649 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 666 ; 1.550 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 599 ; 2.511 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 64.2594 -0.6034 -18.8854 REMARK 3 T TENSOR REMARK 3 T11: 0.6008 T22: 0.4032 REMARK 3 T33: 0.0440 T12: 0.0959 REMARK 3 T13: 0.1446 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 5.8557 L22: 7.5980 REMARK 3 L33: 2.9534 L12: -0.5189 REMARK 3 L13: -0.2475 L23: -0.6363 REMARK 3 S TENSOR REMARK 3 S11: 0.2980 S12: 0.5519 S13: -0.0938 REMARK 3 S21: -1.7442 S22: -0.2815 S23: -0.6138 REMARK 3 S31: 0.2876 S32: -0.0772 S33: -0.0164 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 56.4501 3.5388 0.6385 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.3049 REMARK 3 T33: 0.1006 T12: 0.0049 REMARK 3 T13: -0.0036 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.2362 L22: 2.1279 REMARK 3 L33: 0.3526 L12: 0.3090 REMARK 3 L13: -0.1316 L23: 0.1752 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.1162 S13: -0.0399 REMARK 3 S21: 0.0377 S22: 0.0068 S23: -0.1764 REMARK 3 S31: -0.0582 S32: 0.0112 S33: 0.0129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 55.4529 -1.8320 3.1178 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 0.2939 REMARK 3 T33: 0.0652 T12: 0.0033 REMARK 3 T13: -0.0191 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.8297 L22: 2.4978 REMARK 3 L33: 0.7900 L12: 0.5164 REMARK 3 L13: 0.1158 L23: 0.6864 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.0485 S13: -0.1210 REMARK 3 S21: 0.1097 S22: -0.0391 S23: -0.1176 REMARK 3 S31: 0.0120 S32: -0.0613 S33: 0.0152 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 62.3282 3.3884 4.0426 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: 0.3035 REMARK 3 T33: 0.1170 T12: -0.0003 REMARK 3 T13: -0.0140 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.3019 L22: 1.1561 REMARK 3 L33: 0.3465 L12: 0.4693 REMARK 3 L13: 0.2446 L23: 0.1811 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: 0.0944 S13: -0.0730 REMARK 3 S21: 0.0390 S22: 0.0206 S23: -0.2439 REMARK 3 S31: -0.0019 S32: 0.0523 S33: 0.0017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3R6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RIGAKU VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22511 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QDF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EBS JCSG+ SCREEN B8: 200MM MGCL2, REMARK 280 100MM TRIS PH 7.0, 10% PEG 8000, MYABA.00471.B.A1 PS00908 AT REMARK 280 38.0MG/ML, CRYO PROTECTION: 25% PEG 400, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.34000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 45.34000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.06500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.03250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.34000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.09750 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.34000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.34000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.06500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 45.34000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 57.09750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 45.34000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 19.03250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.68000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ASP A 12 REMARK 465 GLN A 13 REMARK 465 LEU A 32 REMARK 465 ALA A 33 REMARK 465 ARG A 34 REMARK 465 HIS A 35 REMARK 465 ASP A 36 REMARK 465 ILE A 37 REMARK 465 GLN A 38 REMARK 465 VAL A 39 REMARK 465 SER A 40 REMARK 465 ALA A 61 REMARK 465 GLY A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 PHE A 65 REMARK 465 GLU A 66 REMARK 465 PRO A 67 REMARK 465 SER A 96 REMARK 465 ASP A 97 REMARK 465 THR A 98 REMARK 465 ASP A 99 REMARK 465 SER A 100 REMARK 465 PRO A 101 REMARK 465 LEU A 102 REMARK 465 PRO A 103 REMARK 465 LYS A 104 REMARK 465 MET A 105 REMARK 465 ALA A 106 REMARK 465 PHE A 180 REMARK 465 GLY A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 PRO A 184 REMARK 465 LEU A 185 REMARK 465 ILE A 303 REMARK 465 GLU A 304 REMARK 465 SER A 305 REMARK 465 ALA A 306 REMARK 465 SER A 307 REMARK 465 ARG A 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 ILE A 20 CG1 CG2 CD1 REMARK 470 ASP A 21 CG OD1 OD2 REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 THR A 24 OG1 CG2 REMARK 470 VAL A 25 CG1 CG2 REMARK 470 MET A 31 CG SD CE REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LEU A 48 CG CD1 CD2 REMARK 470 GLN A 51 CG CD OE1 NE2 REMARK 470 ILE A 52 CG1 CG2 CD1 REMARK 470 LEU A 55 CG CD1 CD2 REMARK 470 ILE A 56 CG1 CG2 CD1 REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LEU A 60 CG CD1 CD2 REMARK 470 VAL A 68 CG1 CG2 REMARK 470 VAL A 73 CG1 CG2 REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 PHE A 178 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 186 CG CD OE1 NE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 152 OG SER A 154 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 173 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 59 26.49 -78.77 REMARK 500 ALA A 133 62.53 -150.02 REMARK 500 GLN A 188 59.62 -117.56 REMARK 500 THR A 197 -6.15 80.36 REMARK 500 PRO A 264 -169.31 -78.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 400 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 139 OE2 REMARK 620 2 ASP A 168 OD2 104.7 REMARK 620 3 HOH A 441 O 125.0 112.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYABA.00471.B RELATED DB: TARGETDB DBREF 3R6O A 1 308 UNP B1MJ53 B1MJ53_MYCA9 1 308 SEQADV 3R6O MET A -20 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O ALA A -19 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O HIS A -18 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O HIS A -17 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O HIS A -16 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O HIS A -15 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O HIS A -14 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O HIS A -13 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O MET A -12 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O GLY A -11 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O THR A -10 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O LEU A -9 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O GLU A -8 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O ALA A -7 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O GLN A -6 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O THR A -5 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O GLN A -4 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O GLY A -3 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O PRO A -2 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O GLY A -1 UNP B1MJ53 EXPRESSION TAG SEQADV 3R6O SER A 0 UNP B1MJ53 EXPRESSION TAG SEQRES 1 A 329 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 329 ALA GLN THR GLN GLY PRO GLY SER MET ASN LEU ARG ILE SEQRES 3 A 329 VAL SER PHE ALA GLY ALA ASP GLN TRP GLN PRO GLY VAL SEQRES 4 A 329 LEU ILE ASP ASP ASP THR VAL ALA PRO LEU ALA PRO MET SEQRES 5 A 329 LEU ALA ARG HIS ASP ILE GLN VAL SER SER ALA ARG GLU SEQRES 6 A 329 LEU ILE ALA LEU LEU PRO GLN ILE SER PRO LEU ILE SER SEQRES 7 A 329 ASP GLU LEU ALA GLY GLY SER PHE GLU PRO VAL PRO LEU SEQRES 8 A 329 ASP SER VAL ALA LEU GLY ALA PRO ILE PRO GLU PRO GLY SEQRES 9 A 329 GLN VAL ILE ALA LEU GLY PHE ASN TYR PRO THR HIS SER SEQRES 10 A 329 ASP THR ASP SER PRO LEU PRO LYS MET ALA ASP PRO VAL SEQRES 11 A 329 VAL PHE MET LYS SER PRO THR SER ILE SER GLY PRO ARG SEQRES 12 A 329 ASP ALA VAL ILE ALA PRO ARG THR SER HIS ALA LEU ASP SEQRES 13 A 329 TYR GLU ILE GLU ILE ALA VAL VAL ILE GLY LYS PRO GLY SEQRES 14 A 329 TYR ARG ILE GLU ARG SER GLN ALA ILE LYS HIS VAL ALA SEQRES 15 A 329 GLY TYR MET LEU ALA ASN ASP ILE THR ALA ARG ASP VAL SEQRES 16 A 329 ALA LEU PRO PHE GLY PHE GLY GLY SER PRO LEU GLN ALA SEQRES 17 A 329 GLN VAL VAL ARG GLY LYS GLY TYR PRO THR PHE CYS PRO SEQRES 18 A 329 THR GLY PRO TRP LEU PHE THR THR GLY SER ASP THR THR SEQRES 19 A 329 PHE GLU THR PHE ASP PHE GLU LEU ARG ILE ASN GLY GLU SEQRES 20 A 329 LEU ARG GLN SER GLY SER THR VAL ASP MET THR LEU GLY SEQRES 21 A 329 PHE ALA GLU VAL VAL GLU THR VAL SER ALA THR ILE ALA SEQRES 22 A 329 LEU ARG ALA GLY ASP ILE ILE LEU THR GLY THR PRO GLY SEQRES 23 A 329 GLY CYS GLY PHE GLN PHE ASP PRO PRO ARG TYR LEU ARG SEQRES 24 A 329 PRO GLY ASP VAL ILE GLU ALA HIS SER ALA LYS LEU GLY SEQRES 25 A 329 LYS MET ARG LEU PRO VAL HIS ASP GLU LYS PRO ILE GLU SEQRES 26 A 329 SER ALA SER ARG HET MG A 400 1 HET CL A 401 1 HET CL A 402 1 HET CL A 403 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 MG MG 2+ FORMUL 3 CL 3(CL 1-) FORMUL 6 HOH *140(H2 O) HELIX 1 1 SER A 41 ALA A 47 1 7 HELIX 2 2 LEU A 48 GLU A 59 1 12 HELIX 3 3 PRO A 69 VAL A 73 5 5 HELIX 4 4 SER A 114 THR A 116 5 3 HELIX 5 5 GLU A 152 LYS A 158 5 7 HELIX 6 6 ARG A 172 LEU A 176 1 5 HELIX 7 7 GLN A 188 GLY A 194 1 7 HELIX 8 8 VAL A 234 MET A 236 5 3 HELIX 9 9 GLY A 239 ALA A 249 1 11 HELIX 10 10 CYS A 267 PHE A 271 5 5 SHEET 1 A 9 THR A 24 PRO A 27 0 SHEET 2 A 9 PRO A 16 ASP A 21 -1 N VAL A 18 O ALA A 26 SHEET 3 A 9 ARG A 4 SER A 7 -1 N VAL A 6 O GLY A 17 SHEET 4 A 9 LEU A 205 THR A 207 -1 O LEU A 205 N ILE A 5 SHEET 5 A 9 VAL A 160 ASN A 167 -1 N TYR A 163 O PHE A 206 SHEET 6 A 9 ILE A 138 ILE A 144 -1 N ALA A 141 O MET A 164 SHEET 7 A 9 ILE A 258 LEU A 260 -1 O ILE A 259 N VAL A 142 SHEET 8 A 9 VAL A 85 GLY A 89 1 N ILE A 86 O LEU A 260 SHEET 9 A 9 VAL A 109 LYS A 113 -1 O PHE A 111 N ALA A 87 SHEET 1 B 2 ILE A 118 SER A 119 0 SHEET 2 B 2 CYS A 199 PRO A 200 1 O CYS A 199 N SER A 119 SHEET 1 C 5 VAL A 125 ALA A 127 0 SHEET 2 C 5 GLY A 291 ASP A 299 1 O HIS A 298 N VAL A 125 SHEET 3 C 5 VAL A 282 SER A 287 -1 N ILE A 283 O LEU A 295 SHEET 4 C 5 ASP A 218 ILE A 223 -1 N ARG A 222 O GLU A 284 SHEET 5 C 5 GLU A 226 SER A 232 -1 O GLY A 231 N PHE A 219 SHEET 1 D 2 LEU A 134 ASP A 135 0 SHEET 2 D 2 THR A 170 ALA A 171 -1 O THR A 170 N ASP A 135 LINK OE2 GLU A 139 MG MG A 400 1555 1555 2.34 LINK OD2 ASP A 168 MG MG A 400 1555 1555 2.63 LINK MG MG A 400 O HOH A 441 1555 1555 2.90 CISPEP 1 GLY A 202 PRO A 203 0 16.17 CISPEP 2 ASP A 272 PRO A 273 0 -7.74 SITE 1 AC1 5 LEU A 88 GLU A 137 GLU A 139 ASP A 168 SITE 2 AC1 5 HOH A 441 SITE 1 AC2 4 ALA A 42 ARG A 43 PRO A 80 GLU A 81 SITE 1 AC3 4 ASP A 218 SER A 287 ALA A 288 LYS A 289 SITE 1 AC4 2 PHE A 214 HOH A 452 CRYST1 90.680 90.680 76.130 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013135 0.00000