data_3R6R # _entry.id 3R6R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3R6R pdb_00003r6r 10.2210/pdb3r6r/pdb NDB NA1075 ? ? RCSB RCSB064559 ? ? WWPDB D_1000064559 ? ? # _pdbx_database_status.entry_id 3R6R _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-22 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ferraroni, M.' 1 'Bazzicalupi, C.' 2 'Gratteri, P.' 3 'Bilia, A.R.' 4 # _citation.id primary _citation.title ;The crystal structure of human telomeric DNA complexed with berberine: an interesting case of stacked ligand to G-tetrad ratio higher than 1:1. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 41 _citation.page_first 632 _citation.page_last 638 _citation.year 2013 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23104378 _citation.pdbx_database_id_DOI 10.1093/nar/gks1001 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bazzicalupi, C.' 1 ? primary 'Ferraroni, M.' 2 ? primary 'Bilia, A.R.' 3 ? primary 'Scheggi, F.' 4 ? primary 'Gratteri, P.' 5 ? # _cell.length_a 65.620 _cell.length_b 65.620 _cell.length_c 41.810 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3R6R _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 6' _symmetry.entry_id 3R6R _symmetry.Int_Tables_number 168 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (22-mer)' 6983.497 1 ? ? ? 'telomeric DNA' 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn BERBERINE 336.361 4 ? ? ? ? 4 water nat water 18.015 29 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG) (DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can AGGGTTAGGGTTAGGGTTAGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DT n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DT n 1 19 DA n 1 20 DG n 1 21 DG n 1 22 DG n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3R6R _struct_ref.pdbx_db_accession 3R6R _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code AGGGTTAGGGTTAGGGTTAGGG _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3R6R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3R6R _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BER non-polymer . BERBERINE ? 'C20 H18 N O4 1' 336.361 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # _exptl.crystals_number 1 _exptl.entry_id 3R6R _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.72 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 66.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 296 _exptl_crystal_grow.pdbx_details 'Ammonium sulphate, Lithium sulphate, potassium chloride, pH 6.5, vapor diffusion, temperature 296K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2010-11-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal Si(111), horizontally focusing' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12' _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X12 # _reflns.entry_id 3R6R _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 56.828 _reflns.number_all 4674 _reflns.number_obs 4674 _reflns.pdbx_netI_over_sigmaI 24.900 _reflns.pdbx_Rsym_value 0.088 _reflns.pdbx_redundancy 22.200 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.300 2.420 ? 15014 ? 0.681 1.100 0.681 ? 22.300 ? 673 100.000 1 ? 2.420 2.570 ? 14259 ? 0.453 1.700 0.453 ? 22.400 ? 637 100.000 2 ? 2.570 2.750 ? 13557 ? 0.270 2.800 0.270 ? 22.400 ? 606 100.000 3 ? 2.750 2.970 ? 12555 ? 0.203 3.800 0.203 ? 22.400 ? 561 100.000 4 ? 2.970 3.250 ? 11553 ? 0.071 7.800 0.071 ? 22.300 ? 518 100.000 5 ? 3.250 3.640 ? 10474 ? 0.045 7.700 0.045 ? 22.300 ? 469 100.000 6 ? 3.640 4.200 ? 9142 ? 0.071 8.700 0.071 ? 22.200 ? 411 100.000 7 ? 4.200 5.140 ? 7905 ? 0.089 6.000 0.089 ? 22.100 ? 358 100.000 8 ? 5.140 7.270 ? 5978 ? 0.067 8.900 0.067 ? 21.700 ? 276 100.000 9 ? 7.270 41.810 ? 3337 ? 0.031 18.000 0.031 ? 20.200 ? 165 99.600 10 ? # _refine.entry_id 3R6R _refine.ls_d_res_high 2.4000 _refine.ls_d_res_low 30.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_number_reflns_obs 4128 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2172 _refine.ls_R_factor_R_work 0.2155 _refine.ls_wR_factor_R_work 0.2106 _refine.ls_R_factor_R_free 0.2519 _refine.ls_wR_factor_R_free 0.2498 _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_number_reflns_R_free 188 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 26.1470 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc 0.9480 _refine.correlation_coeff_Fo_to_Fc_free 0.9600 _refine.overall_SU_R_Cruickshank_DPI 0.3252 _refine.overall_SU_R_free 0.2389 _refine.pdbx_overall_ESU_R_Free 0.2390 _refine.overall_SU_ML 0.1620 _refine.overall_SU_B ? _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'pdb entry code 3CDM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8045 _refine.B_iso_max 49.160 _refine.B_iso_min 2.000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 465 _refine_hist.pdbx_number_atoms_ligand 102 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 596 _refine_hist.d_res_high 2.4000 _refine_hist.d_res_low 30.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 640 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 984 2.451 3.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 91 0.058 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 344 0.005 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 12 0.199 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 16 0.377 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 628 1.133 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.4000 _refine_ls_shell.d_res_low 2.4620 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 294 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.4220 _refine_ls_shell.R_factor_R_free 0.4670 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 310 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3R6R _struct.title 'Structure of the complex of an intramolecular human telomeric DNA with Berberine formed in K+ solution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R6R _struct_keywords.text 'DNA-DRUG COMPLEX, G-QUADRUPLEX, HUMAN TELOMERIC DNA, DNA, DNA-ANTIBIOTIC complex' _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B K . K ? ? ? 1_555 A DG 3 O6 ? ? A K 1 A DG 4 1_555 ? ? ? ? ? ? ? 2.970 ? ? metalc2 metalc ? ? B K . K ? ? ? 1_555 A DG 4 O6 ? ? A K 1 A DG 5 1_555 ? ? ? ? ? ? ? 2.755 ? ? metalc3 metalc ? ? B K . K ? ? ? 1_555 A DG 9 O6 ? ? A K 1 A DG 10 1_555 ? ? ? ? ? ? ? 2.723 ? ? metalc4 metalc ? ? B K . K ? ? ? 1_555 A DG 10 O6 ? ? A K 1 A DG 11 1_555 ? ? ? ? ? ? ? 2.777 ? ? metalc5 metalc ? ? B K . K ? ? ? 1_555 A DG 15 O6 ? ? A K 1 A DG 16 1_555 ? ? ? ? ? ? ? 2.859 ? ? metalc6 metalc ? ? B K . K ? ? ? 1_555 A DG 16 O6 ? ? A K 1 A DG 17 1_555 ? ? ? ? ? ? ? 2.805 ? ? metalc7 metalc ? ? B K . K ? ? ? 1_555 A DG 21 O6 ? ? A K 1 A DG 22 1_555 ? ? ? ? ? ? ? 2.912 ? ? metalc8 metalc ? ? B K . K ? ? ? 1_555 A DG 22 O6 ? ? A K 1 A DG 23 1_555 ? ? ? ? ? ? ? 2.868 ? ? metalc9 metalc ? ? B K . K ? ? ? 1_555 H HOH . O ? ? A K 1 A HOH 38 1_555 ? ? ? ? ? ? ? 3.278 ? ? metalc10 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 3 A K 24 1_555 ? ? ? ? ? ? ? 2.664 ? ? metalc11 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 24 1_555 ? ? ? ? ? ? ? 2.921 ? ? metalc12 metalc ? ? A DG 8 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 24 1_555 ? ? ? ? ? ? ? 2.808 ? ? metalc13 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 24 1_555 ? ? ? ? ? ? ? 2.804 ? ? metalc14 metalc ? ? A DG 14 O6 ? ? ? 1_555 C K . K ? ? A DG 15 A K 24 1_555 ? ? ? ? ? ? ? 2.724 ? ? metalc15 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 16 A K 24 1_555 ? ? ? ? ? ? ? 2.865 ? ? metalc16 metalc ? ? A DG 20 O6 ? ? ? 1_555 C K . K ? ? A DG 21 A K 24 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc17 metalc ? ? A DG 21 O6 ? ? ? 1_555 C K . K ? ? A DG 22 A K 24 1_555 ? ? ? ? ? ? ? 2.858 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 5 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 5 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 11 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 11 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 17 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 17 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 1 ? 9 'BINDING SITE FOR RESIDUE K A 1' AC2 Software A K 24 ? 9 'BINDING SITE FOR RESIDUE K A 24' AC3 Software A BER 25 ? 7 'BINDING SITE FOR RESIDUE BER A 25' AC4 Software A BER 26 ? 5 'BINDING SITE FOR RESIDUE BER A 26' AC5 Software A BER 27 ? 6 'BINDING SITE FOR RESIDUE BER A 27' AC6 Software A BER 28 ? 6 'BINDING SITE FOR RESIDUE BER A 28' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 3 ? DG A 4 . ? 1_555 ? 2 AC1 9 DG A 4 ? DG A 5 . ? 1_555 ? 3 AC1 9 DG A 9 ? DG A 10 . ? 1_555 ? 4 AC1 9 DG A 10 ? DG A 11 . ? 1_555 ? 5 AC1 9 DG A 15 ? DG A 16 . ? 1_555 ? 6 AC1 9 DG A 16 ? DG A 17 . ? 1_555 ? 7 AC1 9 DG A 21 ? DG A 22 . ? 1_555 ? 8 AC1 9 DG A 22 ? DG A 23 . ? 1_555 ? 9 AC1 9 K C . ? K A 24 . ? 1_555 ? 10 AC2 9 K B . ? K A 1 . ? 1_555 ? 11 AC2 9 DG A 2 ? DG A 3 . ? 1_555 ? 12 AC2 9 DG A 3 ? DG A 4 . ? 1_555 ? 13 AC2 9 DG A 8 ? DG A 9 . ? 1_555 ? 14 AC2 9 DG A 9 ? DG A 10 . ? 1_555 ? 15 AC2 9 DG A 14 ? DG A 15 . ? 1_555 ? 16 AC2 9 DG A 15 ? DG A 16 . ? 1_555 ? 17 AC2 9 DG A 20 ? DG A 21 . ? 1_555 ? 18 AC2 9 DG A 21 ? DG A 22 . ? 1_555 ? 19 AC3 7 DA A 1 ? DA A 2 . ? 3_565 ? 20 AC3 7 DG A 4 ? DG A 5 . ? 1_555 ? 21 AC3 7 DG A 10 ? DG A 11 . ? 1_555 ? 22 AC3 7 DT A 12 ? DT A 13 . ? 6_555 ? 23 AC3 7 DG A 22 ? DG A 23 . ? 1_555 ? 24 AC3 7 BER E . ? BER A 26 . ? 1_555 ? 25 AC3 7 HOH H . ? HOH A 36 . ? 1_555 ? 26 AC4 5 DA A 1 ? DA A 2 . ? 3_565 ? 27 AC4 5 DT A 12 ? DT A 13 . ? 6_555 ? 28 AC4 5 DG A 16 ? DG A 17 . ? 1_555 ? 29 AC4 5 DG A 22 ? DG A 23 . ? 1_555 ? 30 AC4 5 BER D . ? BER A 25 . ? 1_555 ? 31 AC5 6 DG A 14 ? DG A 15 . ? 4_665 ? 32 AC5 6 DG A 14 ? DG A 15 . ? 1_555 ? 33 AC5 6 DG A 20 ? DG A 21 . ? 1_555 ? 34 AC5 6 DG A 20 ? DG A 21 . ? 4_665 ? 35 AC5 6 BER G . ? BER A 28 . ? 1_555 ? 36 AC5 6 BER G . ? BER A 28 . ? 4_665 ? 37 AC6 6 DG A 2 ? DG A 3 . ? 1_555 ? 38 AC6 6 DG A 2 ? DG A 3 . ? 4_665 ? 39 AC6 6 DG A 8 ? DG A 9 . ? 4_665 ? 40 AC6 6 DG A 8 ? DG A 9 . ? 1_555 ? 41 AC6 6 BER F . ? BER A 27 . ? 1_555 ? 42 AC6 6 BER F . ? BER A 27 . ? 4_665 ? # _atom_sites.entry_id 3R6R _atom_sites.fract_transf_matrix[1][1] 0.015239 _atom_sites.fract_transf_matrix[1][2] 0.008798 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017597 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023918 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 2 2 DA A A . n A 1 2 DG 2 3 3 DG G A . n A 1 3 DG 3 4 4 DG G A . n A 1 4 DG 4 5 5 DG G A . n A 1 5 DT 5 6 6 DT T A . n A 1 6 DT 6 7 7 DT T A . n A 1 7 DA 7 8 8 DA A A . n A 1 8 DG 8 9 9 DG G A . n A 1 9 DG 9 10 10 DG G A . n A 1 10 DG 10 11 11 DG G A . n A 1 11 DT 11 12 12 DT T A . n A 1 12 DT 12 13 13 DT T A . n A 1 13 DA 13 14 14 DA A A . n A 1 14 DG 14 15 15 DG G A . n A 1 15 DG 15 16 16 DG G A . n A 1 16 DG 16 17 17 DG G A . n A 1 17 DT 17 18 18 DT T A . n A 1 18 DT 18 19 19 DT T A . n A 1 19 DA 19 20 20 DA A A . n A 1 20 DG 20 21 21 DG G A . n A 1 21 DG 21 22 22 DG G A . n A 1 22 DG 22 23 23 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 1 1 K K A . C 2 K 1 24 2 K K A . D 3 BER 1 25 1 BER BER A . E 3 BER 1 26 1 BER BER A . F 3 BER 1 27 1 BER BER A . G 3 BER 1 28 1 BER BER A . H 4 HOH 1 29 29 HOH HOH A . H 4 HOH 2 30 1 HOH HOH A . H 4 HOH 3 31 2 HOH HOH A . H 4 HOH 4 32 3 HOH HOH A . H 4 HOH 5 33 4 HOH HOH A . H 4 HOH 6 34 5 HOH HOH A . H 4 HOH 7 35 6 HOH HOH A . H 4 HOH 8 36 7 HOH HOH A . H 4 HOH 9 37 8 HOH HOH A . H 4 HOH 10 38 9 HOH HOH A . H 4 HOH 11 39 10 HOH HOH A . H 4 HOH 12 40 11 HOH HOH A . H 4 HOH 13 41 12 HOH HOH A . H 4 HOH 14 42 13 HOH HOH A . H 4 HOH 15 43 14 HOH HOH A . H 4 HOH 16 44 15 HOH HOH A . H 4 HOH 17 45 16 HOH HOH A . H 4 HOH 18 46 17 HOH HOH A . H 4 HOH 19 47 18 HOH HOH A . H 4 HOH 20 48 19 HOH HOH A . H 4 HOH 21 49 20 HOH HOH A . H 4 HOH 22 50 21 HOH HOH A . H 4 HOH 23 51 22 HOH HOH A . H 4 HOH 24 52 23 HOH HOH A . H 4 HOH 25 53 24 HOH HOH A . H 4 HOH 26 54 25 HOH HOH A . H 4 HOH 27 55 26 HOH HOH A . H 4 HOH 28 56 27 HOH HOH A . H 4 HOH 29 57 28 HOH HOH A . # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALTION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A BER 27 ? F BER . 2 1 A BER 28 ? G BER . 3 1 A HOH 30 ? H HOH . 4 1 A HOH 42 ? H HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 4 ? A DG 5 ? 1_555 69.4 ? 2 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 9 ? A DG 10 ? 1_555 70.7 ? 3 O6 ? A DG 4 ? A DG 5 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 9 ? A DG 10 ? 1_555 93.5 ? 4 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 10 ? A DG 11 ? 1_555 132.8 ? 5 O6 ? A DG 4 ? A DG 5 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 10 ? A DG 11 ? 1_555 78.4 ? 6 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 10 ? A DG 11 ? 1_555 78.0 ? 7 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 15 ? A DG 16 ? 1_555 105.7 ? 8 O6 ? A DG 4 ? A DG 5 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 15 ? A DG 16 ? 1_555 160.1 ? 9 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 15 ? A DG 16 ? 1_555 67.0 ? 10 O6 ? A DG 10 ? A DG 11 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 15 ? A DG 16 ? 1_555 93.0 ? 11 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 16 ? A DG 17 ? 1_555 155.0 ? 12 O6 ? A DG 4 ? A DG 5 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 16 ? A DG 17 ? 1_555 121.2 ? 13 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 16 ? A DG 17 ? 1_555 126.7 ? 14 O6 ? A DG 10 ? A DG 11 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 16 ? A DG 17 ? 1_555 72.0 ? 15 O6 ? A DG 15 ? A DG 16 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 16 ? A DG 17 ? 1_555 71.6 ? 16 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 65.1 ? 17 O6 ? A DG 4 ? A DG 5 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 121.2 ? 18 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 104.2 ? 19 O6 ? A DG 10 ? A DG 11 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 159.7 ? 20 O6 ? A DG 15 ? A DG 16 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 70.1 ? 21 O6 ? A DG 16 ? A DG 17 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 91.4 ? 22 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 22 ? A DG 23 ? 1_555 88.5 ? 23 O6 ? A DG 4 ? A DG 5 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 22 ? A DG 23 ? 1_555 72.4 ? 24 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 22 ? A DG 23 ? 1_555 158.1 ? 25 O6 ? A DG 10 ? A DG 11 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 22 ? A DG 23 ? 1_555 114.0 ? 26 O6 ? A DG 15 ? A DG 16 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 22 ? A DG 23 ? 1_555 127.4 ? 27 O6 ? A DG 16 ? A DG 17 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 22 ? A DG 23 ? 1_555 75.2 ? 28 O6 ? A DG 21 ? A DG 22 ? 1_555 K ? B K . ? A K 1 ? 1_555 O6 ? A DG 22 ? A DG 23 ? 1_555 71.2 ? 29 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? B K . ? A K 1 ? 1_555 O ? H HOH . ? A HOH 38 ? 1_555 127.5 ? 30 O6 ? A DG 4 ? A DG 5 ? 1_555 K ? B K . ? A K 1 ? 1_555 O ? H HOH . ? A HOH 38 ? 1_555 63.2 ? 31 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? B K . ? A K 1 ? 1_555 O ? H HOH . ? A HOH 38 ? 1_555 131.5 ? 32 O6 ? A DG 10 ? A DG 11 ? 1_555 K ? B K . ? A K 1 ? 1_555 O ? H HOH . ? A HOH 38 ? 1_555 56.8 ? 33 O6 ? A DG 15 ? A DG 16 ? 1_555 K ? B K . ? A K 1 ? 1_555 O ? H HOH . ? A HOH 38 ? 1_555 126.5 ? 34 O6 ? A DG 16 ? A DG 17 ? 1_555 K ? B K . ? A K 1 ? 1_555 O ? H HOH . ? A HOH 38 ? 1_555 58.1 ? 35 O6 ? A DG 21 ? A DG 22 ? 1_555 K ? B K . ? A K 1 ? 1_555 O ? H HOH . ? A HOH 38 ? 1_555 124.3 ? 36 O6 ? A DG 22 ? A DG 23 ? 1_555 K ? B K . ? A K 1 ? 1_555 O ? H HOH . ? A HOH 38 ? 1_555 57.2 ? 37 O6 ? A DG 2 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 3 ? A DG 4 ? 1_555 74.0 ? 38 O6 ? A DG 2 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 8 ? A DG 9 ? 1_555 72.9 ? 39 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 8 ? A DG 9 ? 1_555 85.7 ? 40 O6 ? A DG 2 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 9 ? A DG 10 ? 1_555 134.0 ? 41 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 9 ? A DG 10 ? 1_555 70.4 ? 42 O6 ? A DG 8 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 9 ? A DG 10 ? 1_555 76.4 ? 43 O6 ? A DG 2 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 14 ? A DG 15 ? 1_555 113.8 ? 44 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 14 ? A DG 15 ? 1_555 153.2 ? 45 O6 ? A DG 8 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 14 ? A DG 15 ? 1_555 73.2 ? 46 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 14 ? A DG 15 ? 1_555 88.4 ? 47 O6 ? A DG 2 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 16 ? 1_555 154.7 ? 48 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 16 ? 1_555 106.9 ? 49 O6 ? A DG 8 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 16 ? 1_555 132.2 ? 50 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 16 ? 1_555 65.9 ? 51 O6 ? A DG 14 ? A DG 15 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 16 ? 1_555 77.3 ? 52 O6 ? A DG 2 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 20 ? A DG 21 ? 1_555 73.1 ? 53 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 20 ? A DG 21 ? 1_555 130.7 ? 54 O6 ? A DG 8 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 20 ? A DG 21 ? 1_555 117.6 ? 55 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 20 ? A DG 21 ? 1_555 152.8 ? 56 O6 ? A DG 14 ? A DG 15 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 20 ? A DG 21 ? 1_555 75.0 ? 57 O6 ? A DG 15 ? A DG 16 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 20 ? A DG 21 ? 1_555 89.1 ? 58 O6 ? A DG 2 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 87.4 ? 59 O6 ? A DG 3 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 66.4 ? 60 O6 ? A DG 8 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 149.6 ? 61 O6 ? A DG 9 ? A DG 10 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 103.5 ? 62 O6 ? A DG 14 ? A DG 15 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 137.0 ? 63 O6 ? A DG 15 ? A DG 16 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 70.7 ? 64 O6 ? A DG 20 ? A DG 21 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 22 ? 1_555 76.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-29 2 'Structure model' 1 1 2013-01-30 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' diffrn_source 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.value' 15 3 'Structure model' '_struct_conn.pdbx_dist_value' 16 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 3R6R _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 41.810 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 41.810 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.9 2008/10/21 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345dtb . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? "C2'" A DA 2 ? ? 109.11 103.10 6.01 0.90 N 2 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.81 108.30 3.51 0.30 N 3 1 "C3'" A DT 18 ? ? "O3'" A DT 18 ? ? P A DT 19 ? ? 129.95 119.70 10.25 1.20 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BER C1 C Y N 1 BER C2 C Y N 2 BER N1 N Y N 3 BER C3 C Y N 4 BER C4 C Y N 5 BER C5 C Y N 6 BER C6 C Y N 7 BER C7 C N N 8 BER C8 C Y N 9 BER C9 C Y N 10 BER C10 C N N 11 BER C11 C Y N 12 BER C12 C Y N 13 BER C13 C Y N 14 BER C14 C Y N 15 BER O1 O N N 16 BER C15 C Y N 17 BER C16 C Y N 18 BER O2 O N N 19 BER C17 C N N 20 BER C18 C Y N 21 BER O3 O N N 22 BER O4 O N N 23 BER C19 C N N 24 BER C20 C N N 25 BER H31 H N N 26 BER H51 H N N 27 BER H61 H N N 28 BER H71 H N N 29 BER H72 H N N 30 BER H91 H N N 31 BER H101 H N N 32 BER H102 H N N 33 BER H131 H N N 34 BER H161 H N N 35 BER H171 H N N 36 BER H172 H N N 37 BER H191 H N N 38 BER H192 H N N 39 BER H193 H N N 40 BER H201 H N N 41 BER H202 H N N 42 BER H203 H N N 43 DA OP3 O N N 44 DA P P N N 45 DA OP1 O N N 46 DA OP2 O N N 47 DA "O5'" O N N 48 DA "C5'" C N N 49 DA "C4'" C N R 50 DA "O4'" O N N 51 DA "C3'" C N S 52 DA "O3'" O N N 53 DA "C2'" C N N 54 DA "C1'" C N R 55 DA N9 N Y N 56 DA C8 C Y N 57 DA N7 N Y N 58 DA C5 C Y N 59 DA C6 C Y N 60 DA N6 N N N 61 DA N1 N Y N 62 DA C2 C Y N 63 DA N3 N Y N 64 DA C4 C Y N 65 DA HOP3 H N N 66 DA HOP2 H N N 67 DA "H5'" H N N 68 DA "H5''" H N N 69 DA "H4'" H N N 70 DA "H3'" H N N 71 DA "HO3'" H N N 72 DA "H2'" H N N 73 DA "H2''" H N N 74 DA "H1'" H N N 75 DA H8 H N N 76 DA H61 H N N 77 DA H62 H N N 78 DA H2 H N N 79 DG OP3 O N N 80 DG P P N N 81 DG OP1 O N N 82 DG OP2 O N N 83 DG "O5'" O N N 84 DG "C5'" C N N 85 DG "C4'" C N R 86 DG "O4'" O N N 87 DG "C3'" C N S 88 DG "O3'" O N N 89 DG "C2'" C N N 90 DG "C1'" C N R 91 DG N9 N Y N 92 DG C8 C Y N 93 DG N7 N Y N 94 DG C5 C Y N 95 DG C6 C N N 96 DG O6 O N N 97 DG N1 N N N 98 DG C2 C N N 99 DG N2 N N N 100 DG N3 N N N 101 DG C4 C Y N 102 DG HOP3 H N N 103 DG HOP2 H N N 104 DG "H5'" H N N 105 DG "H5''" H N N 106 DG "H4'" H N N 107 DG "H3'" H N N 108 DG "HO3'" H N N 109 DG "H2'" H N N 110 DG "H2''" H N N 111 DG "H1'" H N N 112 DG H8 H N N 113 DG H1 H N N 114 DG H21 H N N 115 DG H22 H N N 116 DT OP3 O N N 117 DT P P N N 118 DT OP1 O N N 119 DT OP2 O N N 120 DT "O5'" O N N 121 DT "C5'" C N N 122 DT "C4'" C N R 123 DT "O4'" O N N 124 DT "C3'" C N S 125 DT "O3'" O N N 126 DT "C2'" C N N 127 DT "C1'" C N R 128 DT N1 N N N 129 DT C2 C N N 130 DT O2 O N N 131 DT N3 N N N 132 DT C4 C N N 133 DT O4 O N N 134 DT C5 C N N 135 DT C7 C N N 136 DT C6 C N N 137 DT HOP3 H N N 138 DT HOP2 H N N 139 DT "H5'" H N N 140 DT "H5''" H N N 141 DT "H4'" H N N 142 DT "H3'" H N N 143 DT "HO3'" H N N 144 DT "H2'" H N N 145 DT "H2''" H N N 146 DT "H1'" H N N 147 DT H3 H N N 148 DT H71 H N N 149 DT H72 H N N 150 DT H73 H N N 151 DT H6 H N N 152 HOH O O N N 153 HOH H1 H N N 154 HOH H2 H N N 155 K K K N N 156 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BER C1 C2 sing Y N 1 BER C1 N1 doub Y N 2 BER C1 C3 sing Y N 3 BER C2 C4 doub Y N 4 BER C2 C5 sing Y N 5 BER N1 C6 sing Y N 6 BER N1 C7 sing N N 7 BER C3 C8 doub Y N 8 BER C3 H31 sing N N 9 BER C4 C9 sing Y N 10 BER C4 C10 sing N N 11 BER C5 C11 doub Y N 12 BER C5 H51 sing N N 13 BER C6 C12 doub Y N 14 BER C6 H61 sing N N 15 BER C7 C10 sing N N 16 BER C7 H71 sing N N 17 BER C7 H72 sing N N 18 BER C8 C12 sing Y N 19 BER C8 C13 sing Y N 20 BER C9 C14 doub Y N 21 BER C9 H91 sing N N 22 BER C10 H101 sing N N 23 BER C10 H102 sing N N 24 BER C11 C14 sing Y N 25 BER C11 O1 sing N N 26 BER C12 C15 sing Y N 27 BER C13 C16 doub Y N 28 BER C13 H131 sing N N 29 BER C14 O2 sing N N 30 BER O1 C17 sing N N 31 BER C15 C18 doub Y N 32 BER C15 O3 sing N N 33 BER C16 C18 sing Y N 34 BER C16 H161 sing N N 35 BER O2 C17 sing N N 36 BER C17 H171 sing N N 37 BER C17 H172 sing N N 38 BER C18 O4 sing N N 39 BER O3 C19 sing N N 40 BER O4 C20 sing N N 41 BER C19 H191 sing N N 42 BER C19 H192 sing N N 43 BER C19 H193 sing N N 44 BER C20 H201 sing N N 45 BER C20 H202 sing N N 46 BER C20 H203 sing N N 47 DA OP3 P sing N N 48 DA OP3 HOP3 sing N N 49 DA P OP1 doub N N 50 DA P OP2 sing N N 51 DA P "O5'" sing N N 52 DA OP2 HOP2 sing N N 53 DA "O5'" "C5'" sing N N 54 DA "C5'" "C4'" sing N N 55 DA "C5'" "H5'" sing N N 56 DA "C5'" "H5''" sing N N 57 DA "C4'" "O4'" sing N N 58 DA "C4'" "C3'" sing N N 59 DA "C4'" "H4'" sing N N 60 DA "O4'" "C1'" sing N N 61 DA "C3'" "O3'" sing N N 62 DA "C3'" "C2'" sing N N 63 DA "C3'" "H3'" sing N N 64 DA "O3'" "HO3'" sing N N 65 DA "C2'" "C1'" sing N N 66 DA "C2'" "H2'" sing N N 67 DA "C2'" "H2''" sing N N 68 DA "C1'" N9 sing N N 69 DA "C1'" "H1'" sing N N 70 DA N9 C8 sing Y N 71 DA N9 C4 sing Y N 72 DA C8 N7 doub Y N 73 DA C8 H8 sing N N 74 DA N7 C5 sing Y N 75 DA C5 C6 sing Y N 76 DA C5 C4 doub Y N 77 DA C6 N6 sing N N 78 DA C6 N1 doub Y N 79 DA N6 H61 sing N N 80 DA N6 H62 sing N N 81 DA N1 C2 sing Y N 82 DA C2 N3 doub Y N 83 DA C2 H2 sing N N 84 DA N3 C4 sing Y N 85 DG OP3 P sing N N 86 DG OP3 HOP3 sing N N 87 DG P OP1 doub N N 88 DG P OP2 sing N N 89 DG P "O5'" sing N N 90 DG OP2 HOP2 sing N N 91 DG "O5'" "C5'" sing N N 92 DG "C5'" "C4'" sing N N 93 DG "C5'" "H5'" sing N N 94 DG "C5'" "H5''" sing N N 95 DG "C4'" "O4'" sing N N 96 DG "C4'" "C3'" sing N N 97 DG "C4'" "H4'" sing N N 98 DG "O4'" "C1'" sing N N 99 DG "C3'" "O3'" sing N N 100 DG "C3'" "C2'" sing N N 101 DG "C3'" "H3'" sing N N 102 DG "O3'" "HO3'" sing N N 103 DG "C2'" "C1'" sing N N 104 DG "C2'" "H2'" sing N N 105 DG "C2'" "H2''" sing N N 106 DG "C1'" N9 sing N N 107 DG "C1'" "H1'" sing N N 108 DG N9 C8 sing Y N 109 DG N9 C4 sing Y N 110 DG C8 N7 doub Y N 111 DG C8 H8 sing N N 112 DG N7 C5 sing Y N 113 DG C5 C6 sing N N 114 DG C5 C4 doub Y N 115 DG C6 O6 doub N N 116 DG C6 N1 sing N N 117 DG N1 C2 sing N N 118 DG N1 H1 sing N N 119 DG C2 N2 sing N N 120 DG C2 N3 doub N N 121 DG N2 H21 sing N N 122 DG N2 H22 sing N N 123 DG N3 C4 sing N N 124 DT OP3 P sing N N 125 DT OP3 HOP3 sing N N 126 DT P OP1 doub N N 127 DT P OP2 sing N N 128 DT P "O5'" sing N N 129 DT OP2 HOP2 sing N N 130 DT "O5'" "C5'" sing N N 131 DT "C5'" "C4'" sing N N 132 DT "C5'" "H5'" sing N N 133 DT "C5'" "H5''" sing N N 134 DT "C4'" "O4'" sing N N 135 DT "C4'" "C3'" sing N N 136 DT "C4'" "H4'" sing N N 137 DT "O4'" "C1'" sing N N 138 DT "C3'" "O3'" sing N N 139 DT "C3'" "C2'" sing N N 140 DT "C3'" "H3'" sing N N 141 DT "O3'" "HO3'" sing N N 142 DT "C2'" "C1'" sing N N 143 DT "C2'" "H2'" sing N N 144 DT "C2'" "H2''" sing N N 145 DT "C1'" N1 sing N N 146 DT "C1'" "H1'" sing N N 147 DT N1 C2 sing N N 148 DT N1 C6 sing N N 149 DT C2 O2 doub N N 150 DT C2 N3 sing N N 151 DT N3 C4 sing N N 152 DT N3 H3 sing N N 153 DT C4 O4 doub N N 154 DT C4 C5 sing N N 155 DT C5 C7 sing N N 156 DT C5 C6 doub N N 157 DT C7 H71 sing N N 158 DT C7 H72 sing N N 159 DT C7 H73 sing N N 160 DT C6 H6 sing N N 161 HOH O H1 sing N N 162 HOH O H2 sing N N 163 # _ndb_struct_conf_na.entry_id 3R6R _ndb_struct_conf_na.feature 'quadruple helix' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 BERBERINE BER 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3CDM _pdbx_initial_refinement_model.details 'pdb entry code 3CDM' #