data_3R72 # _entry.id 3R72 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3R72 RCSB RCSB064570 WWPDB D_1000064570 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3R72 _pdbx_database_status.recvd_initial_deposition_date 2011-03-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Spinelli, S.' 1 'Iovinella, I.' 2 'Lagarde, A.' 3 'Tegoni, M.' 4 'Pelosi, P.' 5 'Cambillau, C.' 6 # _citation.id primary _citation.title 'Crystal structure of Apis mellifera odorant binding protein 5' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Spinelli, S.' 1 primary 'Iovinella, I.' 2 primary 'Lagarde, A.' 3 primary 'Tegoni, M.' 4 primary 'Pelosi, P.' 5 primary 'Cambillau, C.' 6 # _cell.entry_id 3R72 _cell.length_a 37.695 _cell.length_b 45.239 _cell.length_c 70.882 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3R72 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Odorant binding protein ASP5' 14337.521 1 ? ? 'UNP residues 23-143' ? 2 non-polymer syn N-BUTYL-BENZENESULFONAMIDE 213.297 2 ? ? ? ? 3 water nat water 18.015 254 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'odorant binding protein 5' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSMSADQVEKLAKNMRKSCLQKIAITEELVDGMRRGEFPDDHDLQCYTTCIMKLLRTFKNGNFDFDMIVKQLEITMPPEE VVIGKEIVAVCRNEEYTGDDCQKTYQYVQCHYKQNPEKFFFP ; _entity_poly.pdbx_seq_one_letter_code_can ;MSMSADQVEKLAKNMRKSCLQKIAITEELVDGMRRGEFPDDHDLQCYTTCIMKLLRTFKNGNFDFDMIVKQLEITMPPEE VVIGKEIVAVCRNEEYTGDDCQKTYQYVQCHYKQNPEKFFFP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 MET n 1 4 SER n 1 5 ALA n 1 6 ASP n 1 7 GLN n 1 8 VAL n 1 9 GLU n 1 10 LYS n 1 11 LEU n 1 12 ALA n 1 13 LYS n 1 14 ASN n 1 15 MET n 1 16 ARG n 1 17 LYS n 1 18 SER n 1 19 CYS n 1 20 LEU n 1 21 GLN n 1 22 LYS n 1 23 ILE n 1 24 ALA n 1 25 ILE n 1 26 THR n 1 27 GLU n 1 28 GLU n 1 29 LEU n 1 30 VAL n 1 31 ASP n 1 32 GLY n 1 33 MET n 1 34 ARG n 1 35 ARG n 1 36 GLY n 1 37 GLU n 1 38 PHE n 1 39 PRO n 1 40 ASP n 1 41 ASP n 1 42 HIS n 1 43 ASP n 1 44 LEU n 1 45 GLN n 1 46 CYS n 1 47 TYR n 1 48 THR n 1 49 THR n 1 50 CYS n 1 51 ILE n 1 52 MET n 1 53 LYS n 1 54 LEU n 1 55 LEU n 1 56 ARG n 1 57 THR n 1 58 PHE n 1 59 LYS n 1 60 ASN n 1 61 GLY n 1 62 ASN n 1 63 PHE n 1 64 ASP n 1 65 PHE n 1 66 ASP n 1 67 MET n 1 68 ILE n 1 69 VAL n 1 70 LYS n 1 71 GLN n 1 72 LEU n 1 73 GLU n 1 74 ILE n 1 75 THR n 1 76 MET n 1 77 PRO n 1 78 PRO n 1 79 GLU n 1 80 GLU n 1 81 VAL n 1 82 VAL n 1 83 ILE n 1 84 GLY n 1 85 LYS n 1 86 GLU n 1 87 ILE n 1 88 VAL n 1 89 ALA n 1 90 VAL n 1 91 CYS n 1 92 ARG n 1 93 ASN n 1 94 GLU n 1 95 GLU n 1 96 TYR n 1 97 THR n 1 98 GLY n 1 99 ASP n 1 100 ASP n 1 101 CYS n 1 102 GLN n 1 103 LYS n 1 104 THR n 1 105 TYR n 1 106 GLN n 1 107 TYR n 1 108 VAL n 1 109 GLN n 1 110 CYS n 1 111 HIS n 1 112 TYR n 1 113 LYS n 1 114 GLN n 1 115 ASN n 1 116 PRO n 1 117 GLU n 1 118 LYS n 1 119 PHE n 1 120 PHE n 1 121 PHE n 1 122 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name honeybee _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Apis mellifera' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7460 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8WRW2_APIME _struct_ref.pdbx_db_accession Q8WRW2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SMSADQVEKLAKNMRKSCLQKIAITEELVDGMRRGEFPDDHDLQCYTTCIMKLLRTFKNGNFDFDMIVKQLEITMPPEEV VIGKEIVAVCRNEEYTGDDCQKTYQYVQCHYKQNPEKFFFP ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3R72 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 122 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8WRW2 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 143 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 123 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3R72 _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8WRW2 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'INITIATING METHIONINE' _struct_ref_seq_dif.pdbx_auth_seq_num 2 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NBB non-polymer . N-BUTYL-BENZENESULFONAMIDE ? 'C10 H15 N O2 S' 213.297 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3R72 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_percent_sol 41.64 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4 _exptl_crystal_grow.pdbx_details '20-25% PEG1500, MIB pH 3.7-4, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2010-07-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.975 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.975 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3R72 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 38.13 _reflns.d_resolution_high 1.15 _reflns.number_obs 42573 _reflns.number_all 42573 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.5 _reflns.B_iso_Wilson_estimate 10.1 _reflns.pdbx_redundancy 5.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.15 _reflns_shell.d_res_low 1.21 _reflns_shell.percent_possible_all 97.1 _reflns_shell.Rmerge_I_obs 0.50 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 6095 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3R72 _refine.ls_number_reflns_obs 41327 _refine.ls_number_reflns_all 41327 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.13 _refine.ls_d_res_high 1.15 _refine.ls_percent_reflns_obs 99.30 _refine.ls_R_factor_obs 0.15289 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15181 _refine.ls_R_factor_R_free 0.17253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2188 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.968 _refine.B_iso_mean 10.071 _refine.aniso_B[1][1] -0.04 _refine.aniso_B[2][2] -0.26 _refine.aniso_B[3][3] 0.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.036 _refine.overall_SU_ML 0.022 _refine.overall_SU_B 1.036 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.038 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3R72 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.036 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 990 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 254 _refine_hist.number_atoms_total 1272 _refine_hist.d_res_high 1.15 _refine_hist.d_res_low 38.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.022 ? 1096 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 762 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.341 1.996 ? 1486 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.910 3.000 ? 1873 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 4.470 5.000 ? 136 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 31.636 25.472 ? 53 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.622 15.000 ? 208 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 17.878 15.000 ? 5 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.087 0.200 ? 158 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 1222 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 219 ? 'X-RAY DIFFRACTION' r_mcbond_it 1.121 1.500 ? 646 ? 'X-RAY DIFFRACTION' r_mcbond_other 0.320 1.500 ? 255 ? 'X-RAY DIFFRACTION' r_mcangle_it 1.955 2.000 ? 1060 ? 'X-RAY DIFFRACTION' r_scbond_it 2.859 3.000 ? 450 ? 'X-RAY DIFFRACTION' r_scangle_it 4.488 4.500 ? 422 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1.082 3.000 ? 1858 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.150 _refine_ls_shell.d_res_low 1.180 _refine_ls_shell.number_reflns_R_work 2886 _refine_ls_shell.R_factor_R_work 0.282 _refine_ls_shell.percent_reflns_obs 94.92 _refine_ls_shell.R_factor_R_free 0.345 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 141 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3R72 _struct.title 'Apis mellifera odorant binding protein 5' _struct.pdbx_descriptor 'Odorant binding protein ASP5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R72 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'helical protein, odorant molecules, antennae, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? ALA A 24 ? SER A 5 ALA A 25 1 ? 21 HELX_P HELX_P2 2 THR A 26 ? MET A 33 ? THR A 27 MET A 34 1 ? 8 HELX_P HELX_P3 3 ARG A 34 ? GLY A 36 ? ARG A 35 GLY A 37 5 ? 3 HELX_P HELX_P4 4 ASP A 41 ? LEU A 55 ? ASP A 42 LEU A 56 1 ? 15 HELX_P HELX_P5 5 ASP A 64 ? MET A 76 ? ASP A 65 MET A 77 1 ? 13 HELX_P HELX_P6 6 PRO A 77 ? GLU A 79 ? PRO A 78 GLU A 80 5 ? 3 HELX_P HELX_P7 7 GLU A 80 ? ARG A 92 ? GLU A 81 ARG A 93 1 ? 13 HELX_P HELX_P8 8 ASP A 99 ? ASN A 115 ? ASP A 100 ASN A 116 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 50 SG ? ? A CYS 20 A CYS 51 1_555 ? ? ? ? ? ? ? 2.086 ? disulf2 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 101 SG ? ? A CYS 47 A CYS 102 1_555 ? ? ? ? ? ? ? 2.106 ? disulf3 disulf ? ? A CYS 91 SG ? ? ? 1_555 A CYS 110 SG ? ? A CYS 92 A CYS 111 1_555 ? ? ? ? ? ? ? 2.076 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 58 ? LYS A 59 ? PHE A 59 LYS A 60 A 2 ASN A 62 ? PHE A 63 ? ASN A 63 PHE A 64 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 59 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 60 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ASN _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 62 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASN _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 63 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE NBB A 1' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE NBB A 124' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 MET A 52 ? MET A 53 . ? 1_555 ? 2 AC1 8 LEU A 55 ? LEU A 56 . ? 1_555 ? 3 AC1 8 THR A 57 ? THR A 58 . ? 1_555 ? 4 AC1 8 ILE A 68 ? ILE A 69 . ? 1_555 ? 5 AC1 8 HIS A 111 ? HIS A 112 . ? 1_555 ? 6 AC1 8 PHE A 120 ? PHE A 121 . ? 1_555 ? 7 AC1 8 PHE A 121 ? PHE A 122 . ? 1_555 ? 8 AC1 8 NBB C . ? NBB A 124 . ? 1_555 ? 9 AC2 8 NBB B . ? NBB A 1 . ? 1_555 ? 10 AC2 8 VAL A 8 ? VAL A 9 . ? 1_555 ? 11 AC2 8 LEU A 11 ? LEU A 12 . ? 1_555 ? 12 AC2 8 LEU A 55 ? LEU A 56 . ? 1_555 ? 13 AC2 8 THR A 75 ? THR A 76 . ? 1_555 ? 14 AC2 8 GLU A 86 ? GLU A 87 . ? 3_755 ? 15 AC2 8 PHE A 120 ? PHE A 121 . ? 1_555 ? 16 AC2 8 PRO A 122 ? PRO A 123 . ? 1_555 ? # _database_PDB_matrix.entry_id 3R72 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3R72 _atom_sites.fract_transf_matrix[1][1] 0.026529 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022105 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014108 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _database_PDB_caveat.text 'STRUCTURE CONTAINS NUMEROUS UNREALISTIC BOND LENGTHS FOR COVALENT BONDS INVOLVING HYDROGENS.' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 2 2 MET ALA A . n A 1 2 SER 2 3 3 SER SER A . n A 1 3 MET 3 4 4 MET MET A . n A 1 4 SER 4 5 5 SER SER A . n A 1 5 ALA 5 6 6 ALA ALA A . n A 1 6 ASP 6 7 7 ASP ASP A . n A 1 7 GLN 7 8 8 GLN GLN A . n A 1 8 VAL 8 9 9 VAL VAL A . n A 1 9 GLU 9 10 10 GLU GLU A . n A 1 10 LYS 10 11 11 LYS LYS A . n A 1 11 LEU 11 12 12 LEU LEU A . n A 1 12 ALA 12 13 13 ALA ALA A . n A 1 13 LYS 13 14 14 LYS LYS A . n A 1 14 ASN 14 15 15 ASN ASN A . n A 1 15 MET 15 16 16 MET MET A . n A 1 16 ARG 16 17 17 ARG ARG A . n A 1 17 LYS 17 18 18 LYS LYS A . n A 1 18 SER 18 19 19 SER SER A . n A 1 19 CYS 19 20 20 CYS CYS A . n A 1 20 LEU 20 21 21 LEU LEU A . n A 1 21 GLN 21 22 22 GLN ALA A . n A 1 22 LYS 22 23 23 LYS LYS A . n A 1 23 ILE 23 24 24 ILE ILE A . n A 1 24 ALA 24 25 25 ALA ALA A . n A 1 25 ILE 25 26 26 ILE ILE A . n A 1 26 THR 26 27 27 THR THR A . n A 1 27 GLU 27 28 28 GLU GLU A . n A 1 28 GLU 28 29 29 GLU GLU A . n A 1 29 LEU 29 30 30 LEU LEU A . n A 1 30 VAL 30 31 31 VAL VAL A . n A 1 31 ASP 31 32 32 ASP ASP A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 MET 33 34 34 MET MET A . n A 1 34 ARG 34 35 35 ARG ARG A . n A 1 35 ARG 35 36 36 ARG ARG A . n A 1 36 GLY 36 37 37 GLY GLY A . n A 1 37 GLU 37 38 38 GLU GLU A . n A 1 38 PHE 38 39 39 PHE PHE A . n A 1 39 PRO 39 40 40 PRO PRO A . n A 1 40 ASP 40 41 41 ASP ASP A . n A 1 41 ASP 41 42 42 ASP ASP A . n A 1 42 HIS 42 43 43 HIS HIS A . n A 1 43 ASP 43 44 44 ASP ASP A . n A 1 44 LEU 44 45 45 LEU LEU A . n A 1 45 GLN 45 46 46 GLN GLN A . n A 1 46 CYS 46 47 47 CYS CYS A . n A 1 47 TYR 47 48 48 TYR TYR A . n A 1 48 THR 48 49 49 THR THR A . n A 1 49 THR 49 50 50 THR THR A . n A 1 50 CYS 50 51 51 CYS CYS A . n A 1 51 ILE 51 52 52 ILE ILE A . n A 1 52 MET 52 53 53 MET MET A . n A 1 53 LYS 53 54 54 LYS LYS A . n A 1 54 LEU 54 55 55 LEU LEU A . n A 1 55 LEU 55 56 56 LEU LEU A . n A 1 56 ARG 56 57 57 ARG ARG A . n A 1 57 THR 57 58 58 THR THR A . n A 1 58 PHE 58 59 59 PHE PHE A . n A 1 59 LYS 59 60 60 LYS LYS A . n A 1 60 ASN 60 61 61 ASN ASN A . n A 1 61 GLY 61 62 62 GLY GLY A . n A 1 62 ASN 62 63 63 ASN ASN A . n A 1 63 PHE 63 64 64 PHE PHE A . n A 1 64 ASP 64 65 65 ASP ASP A . n A 1 65 PHE 65 66 66 PHE PHE A . n A 1 66 ASP 66 67 67 ASP ASP A . n A 1 67 MET 67 68 68 MET MET A . n A 1 68 ILE 68 69 69 ILE ILE A . n A 1 69 VAL 69 70 70 VAL VAL A . n A 1 70 LYS 70 71 71 LYS LYS A . n A 1 71 GLN 71 72 72 GLN GLN A . n A 1 72 LEU 72 73 73 LEU LEU A . n A 1 73 GLU 73 74 74 GLU GLU A . n A 1 74 ILE 74 75 75 ILE ILE A . n A 1 75 THR 75 76 76 THR THR A . n A 1 76 MET 76 77 77 MET MET A . n A 1 77 PRO 77 78 78 PRO PRO A . n A 1 78 PRO 78 79 79 PRO PRO A . n A 1 79 GLU 79 80 80 GLU GLU A . n A 1 80 GLU 80 81 81 GLU GLU A . n A 1 81 VAL 81 82 82 VAL VAL A . n A 1 82 VAL 82 83 83 VAL VAL A . n A 1 83 ILE 83 84 84 ILE ILE A . n A 1 84 GLY 84 85 85 GLY GLY A . n A 1 85 LYS 85 86 86 LYS LYS A . n A 1 86 GLU 86 87 87 GLU GLU A . n A 1 87 ILE 87 88 88 ILE ILE A . n A 1 88 VAL 88 89 89 VAL VAL A . n A 1 89 ALA 89 90 90 ALA ALA A . n A 1 90 VAL 90 91 91 VAL VAL A . n A 1 91 CYS 91 92 92 CYS CYS A . n A 1 92 ARG 92 93 93 ARG ARG A . n A 1 93 ASN 93 94 94 ASN ASN A . n A 1 94 GLU 94 95 95 GLU GLU A . n A 1 95 GLU 95 96 96 GLU GLU A . n A 1 96 TYR 96 97 97 TYR TYR A . n A 1 97 THR 97 98 98 THR THR A . n A 1 98 GLY 98 99 99 GLY GLY A . n A 1 99 ASP 99 100 100 ASP ASP A . n A 1 100 ASP 100 101 101 ASP ASP A . n A 1 101 CYS 101 102 102 CYS CYS A . n A 1 102 GLN 102 103 103 GLN GLN A . n A 1 103 LYS 103 104 104 LYS LYS A . n A 1 104 THR 104 105 105 THR THR A . n A 1 105 TYR 105 106 106 TYR TYR A . n A 1 106 GLN 106 107 107 GLN GLN A . n A 1 107 TYR 107 108 108 TYR TYR A . n A 1 108 VAL 108 109 109 VAL VAL A . n A 1 109 GLN 109 110 110 GLN GLN A . n A 1 110 CYS 110 111 111 CYS CYS A . n A 1 111 HIS 111 112 112 HIS HIS A . n A 1 112 TYR 112 113 113 TYR TYR A . n A 1 113 LYS 113 114 114 LYS LYS A . n A 1 114 GLN 114 115 115 GLN GLN A . n A 1 115 ASN 115 116 116 ASN ASN A . n A 1 116 PRO 116 117 117 PRO PRO A . n A 1 117 GLU 117 118 118 GLU GLU A . n A 1 118 LYS 118 119 119 LYS LYS A . n A 1 119 PHE 119 120 120 PHE PHE A . n A 1 120 PHE 120 121 121 PHE PHE A . n A 1 121 PHE 121 122 122 PHE PHE A . n A 1 122 PRO 122 123 123 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NBB 1 1 1 NBB NBB A . C 2 NBB 1 124 2 NBB NBB A . D 3 HOH 1 125 125 HOH HOH A . D 3 HOH 2 126 126 HOH HOH A . D 3 HOH 3 127 127 HOH HOH A . D 3 HOH 4 128 128 HOH HOH A . D 3 HOH 5 129 129 HOH HOH A . D 3 HOH 6 130 130 HOH HOH A . D 3 HOH 7 131 131 HOH HOH A . D 3 HOH 8 132 132 HOH HOH A . D 3 HOH 9 133 133 HOH HOH A . D 3 HOH 10 134 134 HOH HOH A . D 3 HOH 11 135 135 HOH HOH A . D 3 HOH 12 136 136 HOH HOH A . D 3 HOH 13 137 137 HOH HOH A . D 3 HOH 14 138 138 HOH HOH A . D 3 HOH 15 139 139 HOH HOH A . D 3 HOH 16 140 140 HOH HOH A . D 3 HOH 17 141 141 HOH HOH A . D 3 HOH 18 142 142 HOH HOH A . D 3 HOH 19 143 143 HOH HOH A . D 3 HOH 20 144 144 HOH HOH A . D 3 HOH 21 145 145 HOH HOH A . D 3 HOH 22 146 146 HOH HOH A . D 3 HOH 23 147 147 HOH HOH A . D 3 HOH 24 148 148 HOH HOH A . D 3 HOH 25 149 149 HOH HOH A . D 3 HOH 26 150 150 HOH HOH A . D 3 HOH 27 151 151 HOH HOH A . D 3 HOH 28 152 152 HOH HOH A . D 3 HOH 29 153 153 HOH HOH A . D 3 HOH 30 154 154 HOH HOH A . D 3 HOH 31 155 155 HOH HOH A . D 3 HOH 32 156 156 HOH HOH A . D 3 HOH 33 157 157 HOH HOH A . D 3 HOH 34 158 158 HOH HOH A . D 3 HOH 35 159 159 HOH HOH A . D 3 HOH 36 160 160 HOH HOH A . D 3 HOH 37 161 161 HOH HOH A . D 3 HOH 38 162 162 HOH HOH A . D 3 HOH 39 163 163 HOH HOH A . D 3 HOH 40 164 164 HOH HOH A . D 3 HOH 41 165 165 HOH HOH A . D 3 HOH 42 166 166 HOH HOH A . D 3 HOH 43 167 167 HOH HOH A . D 3 HOH 44 168 168 HOH HOH A . D 3 HOH 45 169 169 HOH HOH A . D 3 HOH 46 170 170 HOH HOH A . D 3 HOH 47 171 171 HOH HOH A . D 3 HOH 48 172 172 HOH HOH A . D 3 HOH 49 173 173 HOH HOH A . D 3 HOH 50 174 174 HOH HOH A . D 3 HOH 51 175 175 HOH HOH A . D 3 HOH 52 176 176 HOH HOH A . D 3 HOH 53 177 177 HOH HOH A . D 3 HOH 54 178 178 HOH HOH A . D 3 HOH 55 179 179 HOH HOH A . D 3 HOH 56 180 180 HOH HOH A . D 3 HOH 57 181 181 HOH HOH A . D 3 HOH 58 182 182 HOH HOH A . D 3 HOH 59 183 183 HOH HOH A . D 3 HOH 60 184 184 HOH HOH A . D 3 HOH 61 185 185 HOH HOH A . D 3 HOH 62 186 186 HOH HOH A . D 3 HOH 63 187 187 HOH HOH A . D 3 HOH 64 188 188 HOH HOH A . D 3 HOH 65 189 189 HOH HOH A . D 3 HOH 66 190 190 HOH HOH A . D 3 HOH 67 191 191 HOH HOH A . D 3 HOH 68 192 192 HOH HOH A . D 3 HOH 69 193 193 HOH HOH A . D 3 HOH 70 194 194 HOH HOH A . D 3 HOH 71 195 195 HOH HOH A . D 3 HOH 72 196 196 HOH HOH A . D 3 HOH 73 197 197 HOH HOH A . D 3 HOH 74 198 198 HOH HOH A . D 3 HOH 75 199 199 HOH HOH A . D 3 HOH 76 200 200 HOH HOH A . D 3 HOH 77 201 201 HOH HOH A . D 3 HOH 78 202 202 HOH HOH A . D 3 HOH 79 203 203 HOH HOH A . D 3 HOH 80 204 204 HOH HOH A . D 3 HOH 81 205 205 HOH HOH A . D 3 HOH 82 206 206 HOH HOH A . D 3 HOH 83 207 207 HOH HOH A . D 3 HOH 84 208 208 HOH HOH A . D 3 HOH 85 209 209 HOH HOH A . D 3 HOH 86 210 210 HOH HOH A . D 3 HOH 87 211 211 HOH HOH A . D 3 HOH 88 212 212 HOH HOH A . D 3 HOH 89 213 213 HOH HOH A . D 3 HOH 90 214 214 HOH HOH A . D 3 HOH 91 215 215 HOH HOH A . D 3 HOH 92 216 216 HOH HOH A . D 3 HOH 93 217 217 HOH HOH A . D 3 HOH 94 218 218 HOH HOH A . D 3 HOH 95 219 219 HOH HOH A . D 3 HOH 96 220 220 HOH HOH A . D 3 HOH 97 221 221 HOH HOH A . D 3 HOH 98 222 222 HOH HOH A . D 3 HOH 99 223 223 HOH HOH A . D 3 HOH 100 224 224 HOH HOH A . D 3 HOH 101 225 225 HOH HOH A . D 3 HOH 102 226 226 HOH HOH A . D 3 HOH 103 227 227 HOH HOH A . D 3 HOH 104 228 228 HOH HOH A . D 3 HOH 105 229 229 HOH HOH A . D 3 HOH 106 230 230 HOH HOH A . D 3 HOH 107 231 231 HOH HOH A . D 3 HOH 108 232 232 HOH HOH A . D 3 HOH 109 233 233 HOH HOH A . D 3 HOH 110 234 234 HOH HOH A . D 3 HOH 111 235 235 HOH HOH A . D 3 HOH 112 236 236 HOH HOH A . D 3 HOH 113 237 237 HOH HOH A . D 3 HOH 114 238 238 HOH HOH A . D 3 HOH 115 239 239 HOH HOH A . D 3 HOH 116 240 240 HOH HOH A . D 3 HOH 117 241 241 HOH HOH A . D 3 HOH 118 242 242 HOH HOH A . D 3 HOH 119 243 243 HOH HOH A . D 3 HOH 120 244 244 HOH HOH A . D 3 HOH 121 245 245 HOH HOH A . D 3 HOH 122 246 246 HOH HOH A . D 3 HOH 123 247 247 HOH HOH A . D 3 HOH 124 248 248 HOH HOH A . D 3 HOH 125 249 249 HOH HOH A . D 3 HOH 126 250 250 HOH HOH A . D 3 HOH 127 251 251 HOH HOH A . D 3 HOH 128 252 252 HOH HOH A . D 3 HOH 129 253 253 HOH HOH A . D 3 HOH 130 254 254 HOH HOH A . D 3 HOH 131 255 1 HOH HOH A . D 3 HOH 132 256 2 HOH HOH A . D 3 HOH 133 257 3 HOH HOH A . D 3 HOH 134 258 4 HOH HOH A . D 3 HOH 135 259 5 HOH HOH A . D 3 HOH 136 260 6 HOH HOH A . D 3 HOH 137 261 7 HOH HOH A . D 3 HOH 138 262 8 HOH HOH A . D 3 HOH 139 263 9 HOH HOH A . D 3 HOH 140 264 10 HOH HOH A . D 3 HOH 141 265 11 HOH HOH A . D 3 HOH 142 266 12 HOH HOH A . D 3 HOH 143 267 13 HOH HOH A . D 3 HOH 144 268 14 HOH HOH A . D 3 HOH 145 269 15 HOH HOH A . D 3 HOH 146 270 16 HOH HOH A . D 3 HOH 147 271 17 HOH HOH A . D 3 HOH 148 272 18 HOH HOH A . D 3 HOH 149 273 19 HOH HOH A . D 3 HOH 150 274 20 HOH HOH A . D 3 HOH 151 275 21 HOH HOH A . D 3 HOH 152 276 22 HOH HOH A . D 3 HOH 153 277 23 HOH HOH A . D 3 HOH 154 278 24 HOH HOH A . D 3 HOH 155 279 25 HOH HOH A . D 3 HOH 156 280 26 HOH HOH A . D 3 HOH 157 281 27 HOH HOH A . D 3 HOH 158 282 28 HOH HOH A . D 3 HOH 159 283 29 HOH HOH A . D 3 HOH 160 284 30 HOH HOH A . D 3 HOH 161 285 31 HOH HOH A . D 3 HOH 162 286 32 HOH HOH A . D 3 HOH 163 287 33 HOH HOH A . D 3 HOH 164 288 34 HOH HOH A . D 3 HOH 165 289 35 HOH HOH A . D 3 HOH 166 290 36 HOH HOH A . D 3 HOH 167 291 37 HOH HOH A . D 3 HOH 168 292 38 HOH HOH A . D 3 HOH 169 293 39 HOH HOH A . D 3 HOH 170 294 40 HOH HOH A . D 3 HOH 171 295 41 HOH HOH A . D 3 HOH 172 296 42 HOH HOH A . D 3 HOH 173 297 43 HOH HOH A . D 3 HOH 174 298 44 HOH HOH A . D 3 HOH 175 299 45 HOH HOH A . D 3 HOH 176 300 46 HOH HOH A . D 3 HOH 177 301 47 HOH HOH A . D 3 HOH 178 302 48 HOH HOH A . D 3 HOH 179 303 49 HOH HOH A . D 3 HOH 180 304 50 HOH HOH A . D 3 HOH 181 305 51 HOH HOH A . D 3 HOH 182 306 52 HOH HOH A . D 3 HOH 183 307 53 HOH HOH A . D 3 HOH 184 308 54 HOH HOH A . D 3 HOH 185 309 55 HOH HOH A . D 3 HOH 186 310 56 HOH HOH A . D 3 HOH 187 311 57 HOH HOH A . D 3 HOH 188 312 58 HOH HOH A . D 3 HOH 189 313 59 HOH HOH A . D 3 HOH 190 314 60 HOH HOH A . D 3 HOH 191 315 61 HOH HOH A . D 3 HOH 192 316 62 HOH HOH A . D 3 HOH 193 317 63 HOH HOH A . D 3 HOH 194 318 64 HOH HOH A . D 3 HOH 195 319 65 HOH HOH A . D 3 HOH 196 320 66 HOH HOH A . D 3 HOH 197 321 67 HOH HOH A . D 3 HOH 198 322 68 HOH HOH A . D 3 HOH 199 323 69 HOH HOH A . D 3 HOH 200 324 70 HOH HOH A . D 3 HOH 201 325 71 HOH HOH A . D 3 HOH 202 326 72 HOH HOH A . D 3 HOH 203 327 73 HOH HOH A . D 3 HOH 204 328 74 HOH HOH A . D 3 HOH 205 329 75 HOH HOH A . D 3 HOH 206 330 76 HOH HOH A . D 3 HOH 207 331 77 HOH HOH A . D 3 HOH 208 332 78 HOH HOH A . D 3 HOH 209 333 79 HOH HOH A . D 3 HOH 210 334 80 HOH HOH A . D 3 HOH 211 335 81 HOH HOH A . D 3 HOH 212 336 82 HOH HOH A . D 3 HOH 213 337 83 HOH HOH A . D 3 HOH 214 338 84 HOH HOH A . D 3 HOH 215 339 85 HOH HOH A . D 3 HOH 216 340 86 HOH HOH A . D 3 HOH 217 341 87 HOH HOH A . D 3 HOH 218 342 88 HOH HOH A . D 3 HOH 219 343 89 HOH HOH A . D 3 HOH 220 344 90 HOH HOH A . D 3 HOH 221 345 91 HOH HOH A . D 3 HOH 222 346 92 HOH HOH A . D 3 HOH 223 347 93 HOH HOH A . D 3 HOH 224 348 94 HOH HOH A . D 3 HOH 225 349 95 HOH HOH A . D 3 HOH 226 350 96 HOH HOH A . D 3 HOH 227 351 97 HOH HOH A . D 3 HOH 228 352 98 HOH HOH A . D 3 HOH 229 353 99 HOH HOH A . D 3 HOH 230 354 100 HOH HOH A . D 3 HOH 231 355 101 HOH HOH A . D 3 HOH 232 356 102 HOH HOH A . D 3 HOH 233 357 103 HOH HOH A . D 3 HOH 234 358 104 HOH HOH A . D 3 HOH 235 359 105 HOH HOH A . D 3 HOH 236 360 106 HOH HOH A . D 3 HOH 237 361 107 HOH HOH A . D 3 HOH 238 362 108 HOH HOH A . D 3 HOH 239 363 109 HOH HOH A . D 3 HOH 240 364 110 HOH HOH A . D 3 HOH 241 365 111 HOH HOH A . D 3 HOH 242 366 112 HOH HOH A . D 3 HOH 243 367 113 HOH HOH A . D 3 HOH 244 368 114 HOH HOH A . D 3 HOH 245 369 115 HOH HOH A . D 3 HOH 246 370 116 HOH HOH A . D 3 HOH 247 371 117 HOH HOH A . D 3 HOH 248 372 118 HOH HOH A . D 3 HOH 249 373 119 HOH HOH A . D 3 HOH 250 374 120 HOH HOH A . D 3 HOH 251 375 121 HOH HOH A . D 3 HOH 252 376 122 HOH HOH A . D 3 HOH 253 377 123 HOH HOH A . D 3 HOH 254 378 124 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-04 2 'Structure model' 1 1 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.name' 2 2 'Structure model' '_citation_author.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 257 ? ? O A HOH 325 ? ? 1.42 2 1 O A HOH 285 ? ? O A HOH 322 ? ? 1.60 3 1 O A HOH 141 ? ? O A HOH 256 ? ? 1.89 4 1 O A HOH 223 ? ? O A HOH 258 ? ? 1.89 5 1 O A LEU 21 ? ? O A HOH 299 ? ? 1.99 6 1 O A HOH 364 ? ? O A HOH 371 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 214 ? ? 1_555 O A HOH 300 ? ? 3_755 1.18 2 1 HZ2 A LYS 18 ? ? 1_555 O A ILE 24 ? ? 4_556 1.58 3 1 O A HOH 193 ? ? 1_555 O A HOH 280 ? ? 1_655 1.63 4 1 O A HOH 216 ? ? 1_555 O A HOH 280 ? ? 1_655 1.64 5 1 O A HOH 211 ? ? 1_555 O A HOH 300 ? ? 3_755 1.97 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 4 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 SD _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 4 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 4 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 88.86 _pdbx_validate_rmsd_angle.angle_target_value 100.20 _pdbx_validate_rmsd_angle.angle_deviation -11.34 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 116 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -162.27 _pdbx_validate_torsion.psi 82.88 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 2 ? CG ? A MET 1 CG 2 1 Y 1 A MET 2 ? SD ? A MET 1 SD 3 1 Y 1 A MET 2 ? CE ? A MET 1 CE 4 1 Y 1 A GLN 22 ? CG ? A GLN 21 CG 5 1 Y 1 A GLN 22 ? CD ? A GLN 21 CD 6 1 Y 1 A GLN 22 ? OE1 ? A GLN 21 OE1 7 1 Y 1 A GLN 22 ? NE2 ? A GLN 21 NE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N-BUTYL-BENZENESULFONAMIDE NBB 3 water HOH #