HEADER HYDROLASE 22-MAR-11 3R77 TITLE CRYSTAL STRUCTURE OF THE D38A MUTANT OF ISOCHORISMATASE PHZD FROM TITLE 2 PSEUDOMONAS FLUORESCENS 2-79 IN COMPLEX WITH 2-AMINO-2- TITLE 3 DESOXYISOCHORISMATE ADIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ISOCHORISMATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2,3 DIHYDRO-2,3 DIHYDROXYBENZOATE SYNTHASE; COMPND 5 EC: 3.3.2.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 GENE: PHZD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19MODTEV KEYWDS HYDROLASE, ISOCHORISMATASE, PHENAZINE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR Q.A.LI,D.V.MAVRODI,L.S.THOMASHOW,M.ROESSLE,W.BLANKENFELDT REVDAT 4 21-FEB-24 3R77 1 REMARK SEQADV REVDAT 3 01-JUN-11 3R77 1 JRNL REVDAT 2 13-APR-11 3R77 1 JRNL REVDAT 1 30-MAR-11 3R77 0 JRNL AUTH Q.A.LI,D.V.MAVRODI,L.S.THOMASHOW,M.ROESSLE,W.BLANKENFELDT JRNL TITL LIGAND BINDING INDUCES AN AMMONIA CHANNEL IN JRNL TITL 2 2-AMINO-2-DESOXYISOCHORISMATE (ADIC) SYNTHASE PHZE. JRNL REF J.BIOL.CHEM. V. 286 18213 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21454481 JRNL DOI 10.1074/JBC.M110.183418 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1586 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2143 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 454 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.466 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3368 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2215 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4622 ; 1.904 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5363 ; 0.973 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 6.258 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;35.516 ;23.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;12.371 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3822 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 699 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2089 ; 1.051 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 824 ; 0.393 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3368 ; 1.666 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1279 ; 2.833 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1246 ; 4.203 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 206 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 98.5058 52.3061 17.1712 REMARK 3 T TENSOR REMARK 3 T11: -0.0008 T22: 0.0137 REMARK 3 T33: 0.0158 T12: 0.0025 REMARK 3 T13: -0.0007 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.5396 L22: 0.8064 REMARK 3 L33: 0.5290 L12: 0.2070 REMARK 3 L13: -0.1920 L23: 0.0734 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.0012 S13: -0.0248 REMARK 3 S21: -0.0034 S22: -0.0130 S23: -0.0940 REMARK 3 S31: 0.0070 S32: 0.0704 S33: 0.0152 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 206 REMARK 3 RESIDUE RANGE : B 500 B 500 REMARK 3 ORIGIN FOR THE GROUP (A): 72.5849 51.4550 22.2694 REMARK 3 T TENSOR REMARK 3 T11: 0.0109 T22: 0.0271 REMARK 3 T33: 0.0250 T12: -0.0128 REMARK 3 T13: 0.0152 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4672 L22: 0.7123 REMARK 3 L33: 0.7890 L12: -0.1404 REMARK 3 L13: -0.0493 L23: 0.1327 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.0067 S13: -0.0171 REMARK 3 S21: 0.0720 S22: -0.0337 S23: 0.1111 REMARK 3 S31: 0.0441 S32: -0.1350 S33: 0.0370 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3R77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.653 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-CACODYLATE, 0.2 M NA-ACETATE, REMARK 280 25% (W/V) PEG 4000, SOAKING WITH 1 MM ADIC FOR 60 MINUTES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.47000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.47000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 207 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 LEU B 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 302 O HOH B 349 1.89 REMARK 500 CD1 LEU A 22 O HOH A 411 1.91 REMARK 500 O HOH A 291 O HOH A 300 1.92 REMARK 500 O HOH A 306 O HOH A 346 2.16 REMARK 500 O HOH B 291 O HOH B 354 2.18 REMARK 500 O HOH B 252 O HOH B 253 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 255 O HOH A 280 3855 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 190 CG GLU B 190 CD 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 41 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 124 -169.84 -129.70 REMARK 500 VAL A 154 -102.66 -104.84 REMARK 500 CYS A 196 -3.28 -153.56 REMARK 500 VAL B 154 -105.02 -100.76 REMARK 500 CYS B 196 -2.45 -154.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QLI A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QLI B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R74 RELATED DB: PDB REMARK 900 RELATED ID: 3R75 RELATED DB: PDB REMARK 900 RELATED ID: 3R76 RELATED DB: PDB DBREF 3R77 A 1 207 UNP Q51790 PHZD_PSEFL 1 207 DBREF 3R77 B 1 207 UNP Q51790 PHZD_PSEFL 1 207 SEQADV 3R77 GLY A -1 UNP Q51790 EXPRESSION TAG SEQADV 3R77 HIS A 0 UNP Q51790 EXPRESSION TAG SEQADV 3R77 ALA A 38 UNP Q51790 ASP 38 ENGINEERED MUTATION SEQADV 3R77 GLY B -1 UNP Q51790 EXPRESSION TAG SEQADV 3R77 HIS B 0 UNP Q51790 EXPRESSION TAG SEQADV 3R77 ALA B 38 UNP Q51790 ASP 38 ENGINEERED MUTATION SEQRES 1 A 209 GLY HIS MET THR GLY ILE PRO SER ILE VAL PRO TYR ALA SEQRES 2 A 209 LEU PRO THR SER ARG ASP LEU PRO ALA ASN LEU ALA GLN SEQRES 3 A 209 TRP HIS ILE ASP PRO GLU ARG ALA VAL LEU LEU VAL HIS SEQRES 4 A 209 ALA MET GLN ARG TYR PHE LEU ARG PRO LEU PRO ASP ALA SEQRES 5 A 209 LEU ARG ASP GLN VAL VAL GLY ASN ALA ALA ARG ILE ARG SEQRES 6 A 209 GLN TRP ALA ALA ASP ASN GLY VAL PRO VAL ALA TYR THR SEQRES 7 A 209 ALA GLN PRO GLY SER MET ASN GLU GLU GLN ARG GLY LEU SEQRES 8 A 209 LEU LYS ASP PHE TRP GLY PRO GLY MET LYS ALA SER PRO SEQRES 9 A 209 THR ASP ARG GLU VAL VAL ASP ALA LEU ALA PRO GLN PRO SEQRES 10 A 209 GLY ASP TRP LEU LEU THR LYS TRP ARG TYR SER ALA PHE SEQRES 11 A 209 PHE ASN SER ASP LEU LEU GLN ARG LEU HIS ALA SER GLY SEQRES 12 A 209 ARG ASP GLN LEU ILE LEU CYS GLY VAL TYR ALA HIS VAL SEQRES 13 A 209 GLY VAL LEU ILE SER SER VAL ASP ALA TYR SER ASN ASP SEQRES 14 A 209 ILE GLN PRO PHE LEU VAL ALA ASP ALA ILE ALA ASP PHE SEQRES 15 A 209 SER LYS GLU HIS HIS TRP MET ALA MET GLU TYR ALA ALA SEQRES 16 A 209 SER ARG CYS ALA MET VAL ILE THR THR ASP GLU VAL VAL SEQRES 17 A 209 LEU SEQRES 1 B 209 GLY HIS MET THR GLY ILE PRO SER ILE VAL PRO TYR ALA SEQRES 2 B 209 LEU PRO THR SER ARG ASP LEU PRO ALA ASN LEU ALA GLN SEQRES 3 B 209 TRP HIS ILE ASP PRO GLU ARG ALA VAL LEU LEU VAL HIS SEQRES 4 B 209 ALA MET GLN ARG TYR PHE LEU ARG PRO LEU PRO ASP ALA SEQRES 5 B 209 LEU ARG ASP GLN VAL VAL GLY ASN ALA ALA ARG ILE ARG SEQRES 6 B 209 GLN TRP ALA ALA ASP ASN GLY VAL PRO VAL ALA TYR THR SEQRES 7 B 209 ALA GLN PRO GLY SER MET ASN GLU GLU GLN ARG GLY LEU SEQRES 8 B 209 LEU LYS ASP PHE TRP GLY PRO GLY MET LYS ALA SER PRO SEQRES 9 B 209 THR ASP ARG GLU VAL VAL ASP ALA LEU ALA PRO GLN PRO SEQRES 10 B 209 GLY ASP TRP LEU LEU THR LYS TRP ARG TYR SER ALA PHE SEQRES 11 B 209 PHE ASN SER ASP LEU LEU GLN ARG LEU HIS ALA SER GLY SEQRES 12 B 209 ARG ASP GLN LEU ILE LEU CYS GLY VAL TYR ALA HIS VAL SEQRES 13 B 209 GLY VAL LEU ILE SER SER VAL ASP ALA TYR SER ASN ASP SEQRES 14 B 209 ILE GLN PRO PHE LEU VAL ALA ASP ALA ILE ALA ASP PHE SEQRES 15 B 209 SER LYS GLU HIS HIS TRP MET ALA MET GLU TYR ALA ALA SEQRES 16 B 209 SER ARG CYS ALA MET VAL ILE THR THR ASP GLU VAL VAL SEQRES 17 B 209 LEU HET QLI A 500 16 HET CL A 208 1 HET CL A 209 1 HET QLI B 500 16 HET CL B 208 1 HET CL B 209 1 HETNAM QLI (5S,6S)-6-AMINO-5-[(1-CARBOXYETHENYL)OXY]CYCLOHEXA-1,3- HETNAM 2 QLI DIENE-1-CARBOXYLIC ACID HETNAM CL CHLORIDE ION HETSYN QLI 2-AMINO-2-DEOXY-ISOCHORISMIC ACID FORMUL 3 QLI 2(C10 H11 N O5) FORMUL 4 CL 4(CL 1-) FORMUL 9 HOH *454(H2 O) HELIX 1 1 THR A 14 LEU A 18 5 5 HELIX 2 2 GLN A 40 ARG A 45 1 6 HELIX 3 3 PRO A 48 ASN A 69 1 22 HELIX 4 4 ASN A 83 GLY A 88 1 6 HELIX 5 5 LEU A 89 GLY A 95 1 7 HELIX 6 6 SER A 101 GLU A 106 1 6 HELIX 7 7 VAL A 108 ALA A 112 5 5 HELIX 8 8 ASP A 132 SER A 140 1 9 HELIX 9 9 VAL A 154 ASN A 166 1 13 HELIX 10 10 SER A 181 CYS A 196 1 16 HELIX 11 11 THR A 201 VAL A 206 1 6 HELIX 12 12 THR B 14 LEU B 18 5 5 HELIX 13 13 GLN B 40 ARG B 45 1 6 HELIX 14 14 PRO B 48 GLY B 70 1 23 HELIX 15 15 ASN B 83 GLY B 88 1 6 HELIX 16 16 LEU B 89 GLY B 95 1 7 HELIX 17 17 SER B 101 GLU B 106 1 6 HELIX 18 18 VAL B 108 ALA B 112 5 5 HELIX 19 19 ASP B 132 SER B 140 1 9 HELIX 20 20 VAL B 154 ASN B 166 1 13 HELIX 21 21 SER B 181 CYS B 196 1 16 HELIX 22 22 THR B 201 VAL B 206 1 6 SHEET 1 A 6 TRP A 118 THR A 121 0 SHEET 2 A 6 VAL A 73 ALA A 77 1 N TYR A 75 O TRP A 118 SHEET 3 A 6 ALA A 32 HIS A 37 1 N LEU A 34 O ALA A 74 SHEET 4 A 6 GLN A 144 VAL A 150 1 O ILE A 146 N LEU A 35 SHEET 5 A 6 GLN A 169 ALA A 178 1 O PHE A 171 N LEU A 147 SHEET 6 A 6 MET A 198 ILE A 200 1 O MET A 198 N LEU A 172 SHEET 1 B 6 TRP B 118 THR B 121 0 SHEET 2 B 6 VAL B 73 ALA B 77 1 N TYR B 75 O TRP B 118 SHEET 3 B 6 ALA B 32 HIS B 37 1 N VAL B 36 O ALA B 74 SHEET 4 B 6 GLN B 144 GLY B 149 1 O ILE B 146 N LEU B 35 SHEET 5 B 6 GLN B 169 ILE B 177 1 O PHE B 171 N LEU B 147 SHEET 6 B 6 MET B 198 ILE B 200 1 O MET B 198 N LEU B 172 CISPEP 1 VAL A 150 TYR A 151 0 -5.68 CISPEP 2 VAL B 150 TYR B 151 0 -9.69 SITE 1 AC1 12 PHE A 43 GLN A 78 ARG A 87 LEU A 90 SITE 2 AC1 12 TRP A 94 LYS A 122 VAL A 150 TYR A 151 SITE 3 AC1 12 VAL A 154 GLY A 155 HOH A 253 HOH A 370 SITE 1 AC2 5 TYR A 10 ALA A 11 HOH A 407 HOH A 425 SITE 2 AC2 5 HOH A 436 SITE 1 AC3 5 LEU A 120 THR A 121 SER A 131 ASP A 132 SITE 2 AC3 5 HOH A 245 SITE 1 AC4 13 HIS B 37 PHE B 43 GLN B 78 ARG B 87 SITE 2 AC4 13 TRP B 94 LYS B 122 TYR B 125 VAL B 150 SITE 3 AC4 13 TYR B 151 VAL B 154 GLY B 155 HOH B 337 SITE 4 AC4 13 HOH B 344 SITE 1 AC5 4 TYR B 10 ALA B 11 TRP B 118 HOH B 226 SITE 1 AC6 4 LEU B 120 THR B 121 ASP B 132 HOH B 294 CRYST1 68.480 72.100 78.940 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012668 0.00000