HEADER TRANSFERASE 23-MAR-11 3R8C TITLE CRYSTAL STRUCTURE OF CYTIDYLATE KINASE (CMK) FROM MYCOBACTERIUM TITLE 2 ABSCESSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CK, CYTIDINE MONOPHOSPHATE KINASE; COMPND 5 EC: 2.7.4.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 561007; SOURCE 4 STRAIN: ATCC 19977 / DSM 44196; SOURCE 5 GENE: CMK, MAB_2371; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, MYCOBACTERIUM, TUBERCULOSIS, WATER KEYWDS 3 CONTAMINANT, CHRONIC LUNG DISEASE, RAPID GROWING MYCOBACTERIUM, KEYWDS 4 PYRIMIDINE NUCLEOSIDE MONOPHOSPHATE KINASE, PHOSPHOTRANSFERASE, KEYWDS 5 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3R8C 1 SEQADV REVDAT 3 15-APR-15 3R8C 1 JRNL REVDAT 2 11-MAR-15 3R8C 1 JRNL VERSN REVDAT 1 30-MAR-11 3R8C 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 21127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1056 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2871 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37000 REMARK 3 B22 (A**2) : -2.68000 REMARK 3 B33 (A**2) : 1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2907 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3975 ; 1.457 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 5.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;35.231 ;24.434 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 444 ;14.434 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.698 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2158 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2010 ; 0.678 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3211 ; 1.214 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 897 ; 2.094 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 762 ; 3.346 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0533 -7.9295 -2.0019 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.0689 REMARK 3 T33: 0.0903 T12: 0.0064 REMARK 3 T13: -0.0078 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 2.3722 L22: 5.3310 REMARK 3 L33: 4.9852 L12: 0.4744 REMARK 3 L13: -1.3475 L23: -0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: -0.1903 S13: 0.1061 REMARK 3 S21: -0.1878 S22: 0.0765 S23: -0.1809 REMARK 3 S31: 0.0844 S32: 0.0777 S33: -0.0600 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9582 4.2382 13.5016 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.1114 REMARK 3 T33: 0.1548 T12: -0.0004 REMARK 3 T13: 0.0269 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.7153 L22: 1.7133 REMARK 3 L33: 3.3725 L12: -0.1267 REMARK 3 L13: -0.2460 L23: 0.3752 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: -0.0666 S13: -0.1008 REMARK 3 S21: -0.1055 S22: 0.0094 S23: -0.0179 REMARK 3 S31: -0.1853 S32: 0.0612 S33: -0.0514 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8252 2.0708 2.0279 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.1054 REMARK 3 T33: 0.1508 T12: 0.0567 REMARK 3 T13: -0.0135 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.4756 L22: 6.5228 REMARK 3 L33: 4.1306 L12: 0.8358 REMARK 3 L13: -0.3700 L23: 2.5659 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.0674 S13: 0.2158 REMARK 3 S21: -0.2291 S22: -0.1863 S23: 0.2771 REMARK 3 S31: -0.2643 S32: -0.3520 S33: 0.2427 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4390 -17.2049 3.8395 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.0741 REMARK 3 T33: 0.1014 T12: -0.0466 REMARK 3 T13: 0.0265 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.2555 L22: 4.1483 REMARK 3 L33: 3.4451 L12: -2.7605 REMARK 3 L13: -0.3549 L23: 1.7934 REMARK 3 S TENSOR REMARK 3 S11: -0.2176 S12: -0.1311 S13: -0.0677 REMARK 3 S21: 0.3544 S22: 0.0252 S23: 0.1548 REMARK 3 S31: 0.4108 S32: -0.1965 S33: 0.1925 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 28.9986 -0.1150 39.7080 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.0631 REMARK 3 T33: 0.1283 T12: -0.0024 REMARK 3 T13: -0.0456 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.8520 L22: 1.3956 REMARK 3 L33: 2.8204 L12: 0.5413 REMARK 3 L13: 1.0592 L23: 1.3877 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: 0.0511 S13: -0.0840 REMARK 3 S21: 0.2305 S22: 0.1274 S23: -0.1340 REMARK 3 S31: 0.0472 S32: -0.0184 S33: -0.1727 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0384 2.0322 43.2325 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1056 REMARK 3 T33: 0.1009 T12: -0.0227 REMARK 3 T13: 0.0312 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.1853 L22: 2.0073 REMARK 3 L33: 2.6471 L12: 0.4281 REMARK 3 L13: 1.7450 L23: 0.8594 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.0901 S13: -0.0131 REMARK 3 S21: 0.3333 S22: -0.0584 S23: 0.0813 REMARK 3 S31: 0.1106 S32: -0.2045 S33: 0.0077 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 148 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7425 14.8732 40.4848 REMARK 3 T TENSOR REMARK 3 T11: 0.4358 T22: 0.2391 REMARK 3 T33: 0.2114 T12: -0.0309 REMARK 3 T13: -0.1326 T23: 0.1129 REMARK 3 L TENSOR REMARK 3 L11: 3.9087 L22: 4.8977 REMARK 3 L33: 6.8144 L12: 4.2781 REMARK 3 L13: 1.8328 L23: 1.2513 REMARK 3 S TENSOR REMARK 3 S11: -0.9019 S12: 0.5325 S13: 0.6338 REMARK 3 S21: -0.7914 S22: 0.6872 S23: 0.7357 REMARK 3 S31: -0.6193 S32: 0.1235 S33: 0.2146 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 197 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7031 19.5194 52.5699 REMARK 3 T TENSOR REMARK 3 T11: 0.2941 T22: 0.0464 REMARK 3 T33: 0.1470 T12: 0.0080 REMARK 3 T13: -0.1191 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 2.2372 L22: 9.7823 REMARK 3 L33: 9.1527 L12: 4.6706 REMARK 3 L13: -1.5757 L23: -3.7714 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: -0.0928 S13: -0.0783 REMARK 3 S21: -0.1148 S22: -0.1254 S23: -0.1838 REMARK 3 S31: -0.1236 S32: -0.1283 S33: 0.1416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3R8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21148 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 2H92 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 27.9 MG/ML 12.5% PEG 1000, REMARK 280 12.5% PEG 2250, 12.5% MPD, 0.1 M MOPS/NAHEPES, 30 MM MGCL2, 30 REMARK 280 MM CACL2, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.24500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 ALA A 155 REMARK 465 GLN A 156 REMARK 465 ASN A 157 REMARK 465 VAL A 158 REMARK 465 SER A 159 REMARK 465 GLY A 160 REMARK 465 GLY A 161 REMARK 465 GLY A 162 REMARK 465 ASP A 163 REMARK 465 ASP A 164 REMARK 465 GLU A 165 REMARK 465 TYR A 166 REMARK 465 GLU A 167 REMARK 465 LYS A 168 REMARK 465 VAL A 169 REMARK 465 ASP A 180 REMARK 465 SER A 181 REMARK 465 THR A 182 REMARK 465 ARG A 183 REMARK 465 ALA A 184 REMARK 465 VAL A 185 REMARK 465 SER A 186 REMARK 465 ALA A 219 REMARK 465 GLY A 220 REMARK 465 ALA A 221 REMARK 465 SER A 222 REMARK 465 ARG A 223 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 GLY B -2 REMARK 465 ALA B 155 REMARK 465 GLN B 156 REMARK 465 ASN B 157 REMARK 465 VAL B 158 REMARK 465 SER B 159 REMARK 465 GLY B 160 REMARK 465 GLY B 161 REMARK 465 GLY B 162 REMARK 465 ASP B 163 REMARK 465 ASP B 164 REMARK 465 GLU B 165 REMARK 465 TYR B 166 REMARK 465 GLU B 167 REMARK 465 LYS B 168 REMARK 465 VAL B 169 REMARK 465 ALA B 219 REMARK 465 GLY B 220 REMARK 465 ALA B 221 REMARK 465 SER B 222 REMARK 465 ARG B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 154 CG OD1 ND2 REMARK 470 LEU A 170 CG CD1 CD2 REMARK 470 ASP A 172 CG OD1 OD2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 179 CG CD1 CD2 REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 116 CG CD OE1 OE2 REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 154 CG OD1 ND2 REMARK 470 LEU B 170 CG CD1 CD2 REMARK 470 ASP B 172 CG OD1 OD2 REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 178 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 ARG B 218 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 267 O HOH A 268 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 60 55.34 -142.74 REMARK 500 SER B 186 70.61 47.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R20 RELATED DB: PDB REMARK 900 SAME PROTEIN FROM MYCOBACTERIUM SMEGMATIS REMARK 900 RELATED ID: MYABA.00663.A RELATED DB: TARGETDB DBREF 3R8C A 2 223 UNP B1MB31 B1MB31_MYCA9 2 223 DBREF 3R8C B 2 223 UNP B1MB31 B1MB31_MYCA9 2 223 SEQADV 3R8C GLY A -4 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C PRO A -3 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C GLY A -2 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C SER A -1 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C MET A 0 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C VAL A 1 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C GLY B -4 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C PRO B -3 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C GLY B -2 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C SER B -1 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C MET B 0 UNP B1MB31 EXPRESSION TAG SEQADV 3R8C VAL B 1 UNP B1MB31 EXPRESSION TAG SEQRES 1 A 228 GLY PRO GLY SER MET VAL VAL ALA VAL ASP GLY PRO SER SEQRES 2 A 228 GLY THR GLY LYS SER SER VAL ALA LYS GLU LEU ALA ARG SEQRES 3 A 228 GLN LEU GLY ALA SER TYR LEU ASP THR GLY ALA MET TYR SEQRES 4 A 228 ARG ILE VAL THR LEU TRP VAL LEU ARG ALA GLY VAL ASP SEQRES 5 A 228 LEU THR ASP PRO ALA ALA ILE ALA ALA ALA THR ASP GLN SEQRES 6 A 228 VAL PRO MET SER VAL SER SER ASP PRO ASP ALA GLN THR SEQRES 7 A 228 ALA LEU LEU ALA GLY GLU ASP VAL SER VAL PRO ILE ARG SEQRES 8 A 228 GLY ASN GLU VAL THR GLY ALA VAL SER ALA VAL SER ALA SEQRES 9 A 228 VAL PRO ALA VAL ARG GLU ARG LEU VAL ARG GLN GLN ARG SEQRES 10 A 228 GLU LEU ALA GLU SER SER GLY ALA VAL VAL VAL GLU GLY SEQRES 11 A 228 ARG ASP ILE GLY THR VAL VAL LEU PRO ASP ALA ASP VAL SEQRES 12 A 228 LYS ILE TYR LEU THR ALA SER ALA GLN ALA ARG ALA GLN SEQRES 13 A 228 ARG ARG ASN ALA GLN ASN VAL SER GLY GLY GLY ASP ASP SEQRES 14 A 228 GLU TYR GLU LYS VAL LEU ALA ASP VAL GLN ARG ARG ASP SEQRES 15 A 228 HIS LEU ASP SER THR ARG ALA VAL SER PRO LEU ARG PRO SEQRES 16 A 228 ALA GLU ASP ALA LEU GLU VAL ASP THR SER ASP MET THR SEQRES 17 A 228 GLN GLU GLN VAL VAL ALA HIS LEU LEU ASP LEU VAL ARG SEQRES 18 A 228 THR ARG ALA GLY ALA SER ARG SEQRES 1 B 228 GLY PRO GLY SER MET VAL VAL ALA VAL ASP GLY PRO SER SEQRES 2 B 228 GLY THR GLY LYS SER SER VAL ALA LYS GLU LEU ALA ARG SEQRES 3 B 228 GLN LEU GLY ALA SER TYR LEU ASP THR GLY ALA MET TYR SEQRES 4 B 228 ARG ILE VAL THR LEU TRP VAL LEU ARG ALA GLY VAL ASP SEQRES 5 B 228 LEU THR ASP PRO ALA ALA ILE ALA ALA ALA THR ASP GLN SEQRES 6 B 228 VAL PRO MET SER VAL SER SER ASP PRO ASP ALA GLN THR SEQRES 7 B 228 ALA LEU LEU ALA GLY GLU ASP VAL SER VAL PRO ILE ARG SEQRES 8 B 228 GLY ASN GLU VAL THR GLY ALA VAL SER ALA VAL SER ALA SEQRES 9 B 228 VAL PRO ALA VAL ARG GLU ARG LEU VAL ARG GLN GLN ARG SEQRES 10 B 228 GLU LEU ALA GLU SER SER GLY ALA VAL VAL VAL GLU GLY SEQRES 11 B 228 ARG ASP ILE GLY THR VAL VAL LEU PRO ASP ALA ASP VAL SEQRES 12 B 228 LYS ILE TYR LEU THR ALA SER ALA GLN ALA ARG ALA GLN SEQRES 13 B 228 ARG ARG ASN ALA GLN ASN VAL SER GLY GLY GLY ASP ASP SEQRES 14 B 228 GLU TYR GLU LYS VAL LEU ALA ASP VAL GLN ARG ARG ASP SEQRES 15 B 228 HIS LEU ASP SER THR ARG ALA VAL SER PRO LEU ARG PRO SEQRES 16 B 228 ALA GLU ASP ALA LEU GLU VAL ASP THR SER ASP MET THR SEQRES 17 B 228 GLN GLU GLN VAL VAL ALA HIS LEU LEU ASP LEU VAL ARG SEQRES 18 B 228 THR ARG ALA GLY ALA SER ARG FORMUL 3 HOH *200(H2 O) HELIX 1 1 GLY A 11 LEU A 23 1 13 HELIX 2 2 THR A 30 GLY A 45 1 16 HELIX 3 3 ASP A 50 THR A 58 1 9 HELIX 4 4 VAL A 83 ARG A 86 5 4 HELIX 5 5 GLY A 87 ALA A 99 1 13 HELIX 6 6 VAL A 100 SER A 117 1 18 HELIX 7 7 SER A 145 ASN A 154 1 10 HELIX 8 8 LEU A 170 LEU A 179 1 10 HELIX 9 9 THR A 203 ARG A 218 1 16 HELIX 10 10 GLY B 11 LEU B 23 1 13 HELIX 11 11 THR B 30 GLY B 45 1 16 HELIX 12 12 ASP B 50 ALA B 57 1 8 HELIX 13 13 VAL B 83 ARG B 86 5 4 HELIX 14 14 GLY B 87 ALA B 99 1 13 HELIX 15 15 VAL B 100 SER B 117 1 18 HELIX 16 16 SER B 145 ASN B 154 1 10 HELIX 17 17 LEU B 170 ARG B 183 1 14 HELIX 18 18 THR B 203 ARG B 218 1 16 SHEET 1 A 5 SER A 26 ASP A 29 0 SHEET 2 A 5 VAL A 121 GLU A 124 1 O VAL A 122 N SER A 26 SHEET 3 A 5 VAL A 1 ASP A 5 1 N VAL A 2 O VAL A 123 SHEET 4 A 5 VAL A 138 THR A 143 1 O LEU A 142 N ASP A 5 SHEET 5 A 5 LEU A 195 ASP A 198 1 O LEU A 195 N LYS A 139 SHEET 1 B 3 MET A 63 SER A 64 0 SHEET 2 B 3 LEU A 75 LEU A 76 -1 O LEU A 75 N SER A 64 SHEET 3 B 3 GLU A 79 ASP A 80 -1 O GLU A 79 N LEU A 76 SHEET 1 C 5 SER B 26 ASP B 29 0 SHEET 2 C 5 VAL B 121 GLU B 124 1 O VAL B 122 N SER B 26 SHEET 3 C 5 VAL B 1 ASP B 5 1 N VAL B 2 O VAL B 123 SHEET 4 C 5 VAL B 138 THR B 143 1 O ILE B 140 N ASP B 5 SHEET 5 C 5 LEU B 195 ASP B 198 1 O LEU B 195 N LYS B 139 SHEET 1 D 3 MET B 63 VAL B 65 0 SHEET 2 D 3 ALA B 74 LEU B 76 -1 O LEU B 75 N SER B 64 SHEET 3 D 3 GLU B 79 ASP B 80 -1 O GLU B 79 N LEU B 76 CRYST1 34.130 70.490 92.320 90.00 91.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029300 0.000000 0.000996 0.00000 SCALE2 0.000000 0.014186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010838 0.00000