data_3R93 # _entry.id 3R93 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3R93 RCSB RCSB064643 WWPDB D_1000064643 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3LWE _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3R93 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-24 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, J.' 1 'Li, Z.' 2 'Ruan, J.' 3 'Xu, C.' 4 'Tong, Y.' 5 'Pan, P.W.' 6 'Tempel, W.' 7 'Crombet, L.' 8 'Min, J.' 9 'Zang, J.' 10 'Structural Genomics Consortium (SGC)' 11 # _citation.id primary _citation.title 'Structural basis for specific binding of human MPP8 chromodomain to histone H3 methylated at lysine 9.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 6 _citation.page_first e25104 _citation.page_last e25104 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22022377 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0025104 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Li, J.' 1 primary 'Li, Z.' 2 primary 'Ruan, J.' 3 primary 'Xu, C.' 4 primary 'Tong, Y.' 5 primary 'Pan, P.W.' 6 primary 'Tempel, W.' 7 primary 'Crombet, L.' 8 primary 'Min, J.' 9 primary 'Zang, J.' 10 # _cell.entry_id 3R93 _cell.length_a 71.148 _cell.length_b 74.005 _cell.length_c 72.609 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3R93 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'M-phase phosphoprotein 8' 7344.350 4 ? ? ? ? 2 polymer syn 'H3K9Me3 peptide' 1607.877 4 ? ? ? ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 3 ? ? ? ? 4 water nat water 18.015 91 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Two hybrid-associated protein 3 with RanBPM, Twa3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENKAK GEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENKAK A,B,C,D ? 2 'polypeptide(L)' no yes 'ARTKQTAR(M3L)STGGKA' ARTKQTARKSTGGKA E,F,G,H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 ASP n 1 4 VAL n 1 5 PHE n 1 6 GLU n 1 7 VAL n 1 8 GLU n 1 9 LYS n 1 10 ILE n 1 11 LEU n 1 12 ASP n 1 13 MET n 1 14 LYS n 1 15 THR n 1 16 GLU n 1 17 GLY n 1 18 GLY n 1 19 LYS n 1 20 VAL n 1 21 LEU n 1 22 TYR n 1 23 LYS n 1 24 VAL n 1 25 ARG n 1 26 TRP n 1 27 LYS n 1 28 GLY n 1 29 TYR n 1 30 THR n 1 31 SER n 1 32 ASP n 1 33 ASP n 1 34 ASP n 1 35 THR n 1 36 TRP n 1 37 GLU n 1 38 PRO n 1 39 GLU n 1 40 ILE n 1 41 HIS n 1 42 LEU n 1 43 GLU n 1 44 ASP n 1 45 CYS n 1 46 LYS n 1 47 GLU n 1 48 VAL n 1 49 LEU n 1 50 LEU n 1 51 GLU n 1 52 PHE n 1 53 ARG n 1 54 LYS n 1 55 LYS n 1 56 ILE n 1 57 ALA n 1 58 GLU n 1 59 ASN n 1 60 LYS n 1 61 ALA n 1 62 LYS n 2 1 ALA n 2 2 ARG n 2 3 THR n 2 4 LYS n 2 5 GLN n 2 6 THR n 2 7 ALA n 2 8 ARG n 2 9 M3L n 2 10 SER n 2 11 THR n 2 12 GLY n 2 13 GLY n 2 14 LYS n 2 15 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MPHOSPH8, MPP8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-V2R-pRARE2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MPP8_HUMAN Q99549 1 GEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENKAK 55 ? 2 PDB 3R93 3R93 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3R93 A 1 ? 62 ? Q99549 55 ? 116 ? 55 116 2 1 3R93 B 1 ? 62 ? Q99549 55 ? 116 ? 55 116 3 1 3R93 C 1 ? 62 ? Q99549 55 ? 116 ? 55 116 4 1 3R93 D 1 ? 62 ? Q99549 55 ? 116 ? 55 116 5 2 3R93 E 1 ? 15 ? 3R93 1 ? 15 ? 1 15 6 2 3R93 F 1 ? 15 ? 3R93 1 ? 15 ? 1 15 7 2 3R93 G 1 ? 15 ? 3R93 1 ? 15 ? 1 15 8 2 3R93 H 1 ? 15 ? 3R93 1 ? 15 ? 1 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3R93 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 53.92 _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '35% PEG2000-MME, 8-fold excess of H3K9Me3, vapor diffusion, sitting drop, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-08-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97924 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.97924 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3R93 _reflns.d_resolution_high 2.050 _reflns.d_resolution_low 50.000 _reflns.number_obs 24361 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_netI_over_sigmaI 12.600 _reflns.pdbx_chi_squared 1.824 _reflns.pdbx_redundancy 6.800 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.050 2.120 ? ? ? 0.735 ? ? 1.706 5.000 ? 2340 97.600 1 1 2.120 2.210 ? ? ? 0.658 ? ? 1.752 6.100 ? 2390 99.900 2 1 2.210 2.310 ? ? ? 0.629 ? ? 1.793 7.000 ? 2409 100.000 3 1 2.310 2.430 ? ? ? 0.504 ? ? 1.787 7.200 ? 2386 100.000 4 1 2.430 2.580 ? ? ? 0.319 ? ? 1.781 7.200 ? 2435 100.000 5 1 2.580 2.780 ? ? ? 0.189 ? ? 1.811 7.200 ? 2429 100.000 6 1 2.780 3.060 ? ? ? 0.103 ? ? 1.799 7.200 ? 2431 100.000 7 1 3.060 3.510 ? ? ? 0.055 ? ? 1.860 7.100 ? 2451 100.000 8 1 3.510 4.420 ? ? ? 0.042 ? ? 2.186 7.000 ? 2482 100.000 9 1 4.420 50.000 ? ? ? 0.030 ? ? 1.709 6.600 ? 2608 99.700 10 1 # _refine.entry_id 3R93 _refine.ls_d_res_high 2.0570 _refine.ls_d_res_low 30.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.1610 _refine.ls_number_reflns_obs 24241 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details 'THIN SHELLS (SFTOOLS)' _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. The programs BUCCANEER, COOT were used as well as the MOLPROBITY server. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2220 _refine.ls_R_factor_R_work 0.2198 _refine.ls_wR_factor_R_work 0.2140 _refine.ls_R_factor_R_free 0.2732 _refine.ls_wR_factor_R_free 0.2790 _refine.ls_percent_reflns_R_free 5.1030 _refine.ls_number_reflns_R_free 1237 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 40.2730 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.8280 _refine.aniso_B[2][2] 0.9030 _refine.aniso_B[3][3] 1.9250 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9530 _refine.correlation_coeff_Fo_to_Fc_free 0.9200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1800 _refine.overall_SU_ML 0.1470 _refine.overall_SU_B 12.4860 _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'pdb entry 3LWE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 102.110 _refine.B_iso_min 29.600 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2178 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 2272 _refine_hist.d_res_high 2.0570 _refine_hist.d_res_low 30.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2210 0.014 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1478 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2980 1.369 1.968 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3616 0.803 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 275 5.878 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 92 38.148 24.783 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 373 14.573 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10 20.282 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 335 0.073 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2419 0.005 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 431 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1391 0.579 1.500 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 574 0.138 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 2196 1.142 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 819 2.019 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 784 3.238 4.500 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 2.110 2.057 1763 93.307 1645 0.316 0 . . . . . . 'X-RAY DIFFRACTION' 20 2.168 2.110 1749 99.543 1573 0.277 168 0.319 . . . . . 'X-RAY DIFFRACTION' 20 2.230 2.168 1666 99.520 1658 0.244 0 . . . . . . 'X-RAY DIFFRACTION' 20 2.298 2.230 1627 99.939 1481 0.248 145 0.304 . . . . . 'X-RAY DIFFRACTION' 20 2.373 2.298 1599 99.562 1592 0.253 0 . . . . . . 'X-RAY DIFFRACTION' 20 2.456 2.373 1533 99.609 1387 0.237 140 0.257 . . . . . 'X-RAY DIFFRACTION' 20 2.548 2.456 1476 99.797 1351 0.218 122 0.256 . . . . . 'X-RAY DIFFRACTION' 20 2.651 2.548 1435 99.582 1429 0.228 0 . . . . . . 'X-RAY DIFFRACTION' 20 2.768 2.651 1370 99.781 1252 0.214 115 0.284 . . . . . 'X-RAY DIFFRACTION' 20 2.902 2.768 1327 99.774 1225 0.219 99 0.255 . . . . . 'X-RAY DIFFRACTION' 20 3.058 2.902 1247 99.759 1160 0.227 84 0.241 . . . . . 'X-RAY DIFFRACTION' 20 3.241 3.058 1202 99.667 1198 0.230 0 . . . . . . 'X-RAY DIFFRACTION' 20 3.462 3.241 1129 99.557 1060 0.226 64 0.287 . . . . . 'X-RAY DIFFRACTION' 20 3.735 3.462 1054 99.431 988 0.211 60 0.249 . . . . . 'X-RAY DIFFRACTION' 20 4.085 3.735 983 99.797 931 0.195 50 0.290 . . . . . 'X-RAY DIFFRACTION' 20 4.557 4.085 890 99.438 843 0.178 42 0.306 . . . . . 'X-RAY DIFFRACTION' 20 5.242 4.557 799 99.625 717 0.166 79 0.256 . . . . . 'X-RAY DIFFRACTION' 20 6.371 5.242 688 99.273 659 0.240 24 0.207 . . . . . 'X-RAY DIFFRACTION' 20 8.814 6.371 550 99.818 521 0.248 28 0.334 . . . . . 'X-RAY DIFFRACTION' 20 30.000 8.814 359 97.772 334 0.230 17 0.334 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3R93 _struct.title 'Crystal structure of the chromo domain of M-phase phosphoprotein 8 bound to H3K9Me3 peptide' _struct.pdbx_descriptor 'M-phase phosphoprotein 8, H3K9Me3 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R93 _struct_keywords.text 'epigenetics, cell cycle, M-phase, chromodomain, Structural Genomics, Structural Genomics Consortium, SGC' _struct_keywords.pdbx_keywords 'CELL CYCLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY INFORMATION FOR THE STRUCTURE IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 30 ? ASP A 33 ? THR A 84 ASP A 87 5 ? 4 HELX_P HELX_P2 2 ILE A 40 ? GLU A 43 ? ILE A 94 GLU A 97 5 ? 4 HELX_P HELX_P3 3 CYS A 45 ? LYS A 60 ? CYS A 99 LYS A 114 1 ? 16 HELX_P HELX_P4 4 THR B 30 ? ASP B 34 ? THR B 84 ASP B 88 5 ? 5 HELX_P HELX_P5 5 ILE B 40 ? LEU B 42 ? ILE B 94 LEU B 96 5 ? 3 HELX_P HELX_P6 6 CYS B 45 ? ASN B 59 ? CYS B 99 ASN B 113 1 ? 15 HELX_P HELX_P7 7 THR C 30 ? ASP C 34 ? THR C 84 ASP C 88 5 ? 5 HELX_P HELX_P8 8 ILE C 40 ? GLU C 43 ? ILE C 94 GLU C 97 5 ? 4 HELX_P HELX_P9 9 CYS C 45 ? LYS C 60 ? CYS C 99 LYS C 114 1 ? 16 HELX_P HELX_P10 10 THR D 30 ? ASP D 33 ? THR D 84 ASP D 87 5 ? 4 HELX_P HELX_P11 11 ILE D 40 ? GLU D 43 ? ILE D 94 GLU D 97 5 ? 4 HELX_P HELX_P12 12 CYS D 45 ? LYS D 60 ? CYS D 99 LYS D 114 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? E ARG 8 C ? ? ? 1_555 E M3L 9 N ? ? E ARG 8 E M3L 9 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale ? ? E M3L 9 C ? ? ? 1_555 E SER 10 N ? ? E M3L 9 E SER 10 1_555 ? ? ? ? ? ? ? 1.337 ? covale3 covale ? ? F ARG 8 C ? ? ? 1_555 F M3L 9 N ? ? F ARG 8 F M3L 9 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? F M3L 9 C ? ? ? 1_555 F SER 10 N ? ? F M3L 9 F SER 10 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale ? ? G ARG 8 C ? ? ? 1_555 G M3L 9 N ? ? G ARG 8 G M3L 9 1_555 ? ? ? ? ? ? ? 1.326 ? covale6 covale ? ? G M3L 9 C ? ? ? 1_555 G SER 10 N ? ? G M3L 9 G SER 10 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? H ARG 8 C ? ? ? 1_555 H M3L 9 N ? ? H ARG 8 H M3L 9 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? H M3L 9 C ? ? ? 1_555 H SER 10 N ? ? H M3L 9 H SER 10 1_555 ? ? ? ? ? ? ? 1.336 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 4 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR E 6 ? ARG E 8 ? THR E 6 ARG E 8 A 2 VAL A 4 ? GLU A 16 ? VAL A 58 GLU A 70 A 3 LYS A 19 ? TRP A 26 ? LYS A 73 TRP A 80 A 4 THR A 35 ? PRO A 38 ? THR A 89 PRO A 92 A 5 GLY H 13 ? LYS H 14 ? GLY H 13 LYS H 14 B 1 THR B 35 ? PRO B 38 ? THR B 89 PRO B 92 B 2 LYS B 19 ? TRP B 26 ? LYS B 73 TRP B 80 B 3 VAL B 4 ? GLU B 16 ? VAL B 58 GLU B 70 B 4 THR F 6 ? ARG F 8 ? THR F 6 ARG F 8 C 1 THR C 35 ? PRO C 38 ? THR C 89 PRO C 92 C 2 LYS C 19 ? TRP C 26 ? LYS C 73 TRP C 80 C 3 VAL C 4 ? GLU C 16 ? VAL C 58 GLU C 70 C 4 THR G 6 ? ARG G 8 ? THR G 6 ARG G 8 D 1 GLY E 13 ? LYS E 14 ? GLY E 13 LYS E 14 D 2 THR D 35 ? PRO D 38 ? THR D 89 PRO D 92 D 3 LYS D 19 ? TRP D 26 ? LYS D 73 TRP D 80 D 4 VAL D 4 ? GLU D 16 ? VAL D 58 GLU D 70 D 5 THR H 6 ? ARG H 8 ? THR H 6 ARG H 8 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA E 7 ? O ALA E 7 N PHE A 5 ? N PHE A 59 A 2 3 N LYS A 14 ? N LYS A 68 O LEU A 21 ? O LEU A 75 A 3 4 N VAL A 24 ? N VAL A 78 O THR A 35 ? O THR A 89 A 4 5 N TRP A 36 ? N TRP A 90 O GLY H 13 ? O GLY H 13 B 1 2 O THR B 35 ? O THR B 89 N VAL B 24 ? N VAL B 78 B 2 3 O LEU B 21 ? O LEU B 75 N LYS B 14 ? N LYS B 68 B 3 4 N PHE B 5 ? N PHE B 59 O ALA F 7 ? O ALA F 7 C 1 2 O THR C 35 ? O THR C 89 N VAL C 24 ? N VAL C 78 C 2 3 O LEU C 21 ? O LEU C 75 N LYS C 14 ? N LYS C 68 C 3 4 N PHE C 5 ? N PHE C 59 O ALA G 7 ? O ALA G 7 D 1 2 O GLY E 13 ? O GLY E 13 N TRP D 36 ? N TRP D 90 D 2 3 O THR D 35 ? O THR D 89 N VAL D 24 ? N VAL D 78 D 3 4 O LYS D 23 ? O LYS D 77 N LEU D 11 ? N LEU D 65 D 4 5 N PHE D 5 ? N PHE D 59 O ALA H 7 ? O ALA H 7 # _atom_sites.entry_id 3R93 _atom_sites.fract_transf_matrix[1][1] 0.014055 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013513 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013772 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 55 ? ? ? A . n A 1 2 GLU 2 56 ? ? ? A . n A 1 3 ASP 3 57 57 ASP ASP A . n A 1 4 VAL 4 58 58 VAL VAL A . n A 1 5 PHE 5 59 59 PHE PHE A . n A 1 6 GLU 6 60 60 GLU GLU A . n A 1 7 VAL 7 61 61 VAL VAL A . n A 1 8 GLU 8 62 62 GLU GLU A . n A 1 9 LYS 9 63 63 LYS LYS A . n A 1 10 ILE 10 64 64 ILE ILE A . n A 1 11 LEU 11 65 65 LEU LEU A . n A 1 12 ASP 12 66 66 ASP ASP A . n A 1 13 MET 13 67 67 MET MET A . n A 1 14 LYS 14 68 68 LYS LYS A . n A 1 15 THR 15 69 69 THR THR A . n A 1 16 GLU 16 70 70 GLU GLU A . n A 1 17 GLY 17 71 71 GLY GLY A . n A 1 18 GLY 18 72 72 GLY GLY A . n A 1 19 LYS 19 73 73 LYS LYS A . n A 1 20 VAL 20 74 74 VAL VAL A . n A 1 21 LEU 21 75 75 LEU LEU A . n A 1 22 TYR 22 76 76 TYR TYR A . n A 1 23 LYS 23 77 77 LYS LYS A . n A 1 24 VAL 24 78 78 VAL VAL A . n A 1 25 ARG 25 79 79 ARG ARG A . n A 1 26 TRP 26 80 80 TRP TRP A . n A 1 27 LYS 27 81 81 LYS LYS A . n A 1 28 GLY 28 82 82 GLY GLY A . n A 1 29 TYR 29 83 83 TYR TYR A . n A 1 30 THR 30 84 84 THR THR A . n A 1 31 SER 31 85 85 SER SER A . n A 1 32 ASP 32 86 86 ASP ASP A . n A 1 33 ASP 33 87 87 ASP ASP A . n A 1 34 ASP 34 88 88 ASP ASP A . n A 1 35 THR 35 89 89 THR THR A . n A 1 36 TRP 36 90 90 TRP TRP A . n A 1 37 GLU 37 91 91 GLU GLU A . n A 1 38 PRO 38 92 92 PRO PRO A . n A 1 39 GLU 39 93 93 GLU GLU A . n A 1 40 ILE 40 94 94 ILE ILE A . n A 1 41 HIS 41 95 95 HIS HIS A . n A 1 42 LEU 42 96 96 LEU LEU A . n A 1 43 GLU 43 97 97 GLU GLU A . n A 1 44 ASP 44 98 98 ASP ASP A . n A 1 45 CYS 45 99 99 CYS CYS A . n A 1 46 LYS 46 100 100 LYS LYS A . n A 1 47 GLU 47 101 101 GLU GLU A . n A 1 48 VAL 48 102 102 VAL VAL A . n A 1 49 LEU 49 103 103 LEU LEU A . n A 1 50 LEU 50 104 104 LEU LEU A . n A 1 51 GLU 51 105 105 GLU GLU A . n A 1 52 PHE 52 106 106 PHE PHE A . n A 1 53 ARG 53 107 107 ARG ARG A . n A 1 54 LYS 54 108 108 LYS LYS A . n A 1 55 LYS 55 109 109 LYS LYS A . n A 1 56 ILE 56 110 110 ILE ILE A . n A 1 57 ALA 57 111 111 ALA ALA A . n A 1 58 GLU 58 112 112 GLU GLU A . n A 1 59 ASN 59 113 113 ASN ASN A . n A 1 60 LYS 60 114 114 LYS LYS A . n A 1 61 ALA 61 115 ? ? ? A . n A 1 62 LYS 62 116 ? ? ? A . n B 1 1 GLY 1 55 ? ? ? B . n B 1 2 GLU 2 56 ? ? ? B . n B 1 3 ASP 3 57 57 ASP ASP B . n B 1 4 VAL 4 58 58 VAL VAL B . n B 1 5 PHE 5 59 59 PHE PHE B . n B 1 6 GLU 6 60 60 GLU GLU B . n B 1 7 VAL 7 61 61 VAL VAL B . n B 1 8 GLU 8 62 62 GLU GLU B . n B 1 9 LYS 9 63 63 LYS LYS B . n B 1 10 ILE 10 64 64 ILE ILE B . n B 1 11 LEU 11 65 65 LEU LEU B . n B 1 12 ASP 12 66 66 ASP ASP B . n B 1 13 MET 13 67 67 MET MET B . n B 1 14 LYS 14 68 68 LYS LYS B . n B 1 15 THR 15 69 69 THR THR B . n B 1 16 GLU 16 70 70 GLU GLU B . n B 1 17 GLY 17 71 71 GLY GLY B . n B 1 18 GLY 18 72 72 GLY GLY B . n B 1 19 LYS 19 73 73 LYS LYS B . n B 1 20 VAL 20 74 74 VAL VAL B . n B 1 21 LEU 21 75 75 LEU LEU B . n B 1 22 TYR 22 76 76 TYR TYR B . n B 1 23 LYS 23 77 77 LYS LYS B . n B 1 24 VAL 24 78 78 VAL VAL B . n B 1 25 ARG 25 79 79 ARG ARG B . n B 1 26 TRP 26 80 80 TRP TRP B . n B 1 27 LYS 27 81 81 LYS LYS B . n B 1 28 GLY 28 82 82 GLY GLY B . n B 1 29 TYR 29 83 83 TYR TYR B . n B 1 30 THR 30 84 84 THR THR B . n B 1 31 SER 31 85 85 SER SER B . n B 1 32 ASP 32 86 86 ASP ASP B . n B 1 33 ASP 33 87 87 ASP ASP B . n B 1 34 ASP 34 88 88 ASP ASP B . n B 1 35 THR 35 89 89 THR THR B . n B 1 36 TRP 36 90 90 TRP TRP B . n B 1 37 GLU 37 91 91 GLU GLU B . n B 1 38 PRO 38 92 92 PRO PRO B . n B 1 39 GLU 39 93 93 GLU GLU B . n B 1 40 ILE 40 94 94 ILE ILE B . n B 1 41 HIS 41 95 95 HIS HIS B . n B 1 42 LEU 42 96 96 LEU LEU B . n B 1 43 GLU 43 97 97 GLU GLU B . n B 1 44 ASP 44 98 98 ASP ASP B . n B 1 45 CYS 45 99 99 CYS CYS B . n B 1 46 LYS 46 100 100 LYS LYS B . n B 1 47 GLU 47 101 101 GLU GLU B . n B 1 48 VAL 48 102 102 VAL VAL B . n B 1 49 LEU 49 103 103 LEU LEU B . n B 1 50 LEU 50 104 104 LEU LEU B . n B 1 51 GLU 51 105 105 GLU GLU B . n B 1 52 PHE 52 106 106 PHE PHE B . n B 1 53 ARG 53 107 107 ARG ARG B . n B 1 54 LYS 54 108 108 LYS LYS B . n B 1 55 LYS 55 109 109 LYS LYS B . n B 1 56 ILE 56 110 110 ILE ILE B . n B 1 57 ALA 57 111 111 ALA ALA B . n B 1 58 GLU 58 112 112 GLU GLU B . n B 1 59 ASN 59 113 113 ASN ASN B . n B 1 60 LYS 60 114 114 LYS LYS B . n B 1 61 ALA 61 115 ? ? ? B . n B 1 62 LYS 62 116 ? ? ? B . n C 1 1 GLY 1 55 ? ? ? C . n C 1 2 GLU 2 56 ? ? ? C . n C 1 3 ASP 3 57 57 ASP ASP C . n C 1 4 VAL 4 58 58 VAL VAL C . n C 1 5 PHE 5 59 59 PHE PHE C . n C 1 6 GLU 6 60 60 GLU GLU C . n C 1 7 VAL 7 61 61 VAL VAL C . n C 1 8 GLU 8 62 62 GLU GLU C . n C 1 9 LYS 9 63 63 LYS LYS C . n C 1 10 ILE 10 64 64 ILE ILE C . n C 1 11 LEU 11 65 65 LEU LEU C . n C 1 12 ASP 12 66 66 ASP ASP C . n C 1 13 MET 13 67 67 MET MET C . n C 1 14 LYS 14 68 68 LYS LYS C . n C 1 15 THR 15 69 69 THR THR C . n C 1 16 GLU 16 70 70 GLU GLU C . n C 1 17 GLY 17 71 71 GLY GLY C . n C 1 18 GLY 18 72 72 GLY GLY C . n C 1 19 LYS 19 73 73 LYS LYS C . n C 1 20 VAL 20 74 74 VAL VAL C . n C 1 21 LEU 21 75 75 LEU LEU C . n C 1 22 TYR 22 76 76 TYR TYR C . n C 1 23 LYS 23 77 77 LYS LYS C . n C 1 24 VAL 24 78 78 VAL VAL C . n C 1 25 ARG 25 79 79 ARG ARG C . n C 1 26 TRP 26 80 80 TRP TRP C . n C 1 27 LYS 27 81 81 LYS LYS C . n C 1 28 GLY 28 82 82 GLY GLY C . n C 1 29 TYR 29 83 83 TYR TYR C . n C 1 30 THR 30 84 84 THR THR C . n C 1 31 SER 31 85 85 SER SER C . n C 1 32 ASP 32 86 86 ASP ASP C . n C 1 33 ASP 33 87 87 ASP ASP C . n C 1 34 ASP 34 88 88 ASP ASP C . n C 1 35 THR 35 89 89 THR THR C . n C 1 36 TRP 36 90 90 TRP TRP C . n C 1 37 GLU 37 91 91 GLU GLU C . n C 1 38 PRO 38 92 92 PRO PRO C . n C 1 39 GLU 39 93 93 GLU GLU C . n C 1 40 ILE 40 94 94 ILE ILE C . n C 1 41 HIS 41 95 95 HIS HIS C . n C 1 42 LEU 42 96 96 LEU LEU C . n C 1 43 GLU 43 97 97 GLU GLU C . n C 1 44 ASP 44 98 98 ASP ASP C . n C 1 45 CYS 45 99 99 CYS CYS C . n C 1 46 LYS 46 100 100 LYS LYS C . n C 1 47 GLU 47 101 101 GLU GLU C . n C 1 48 VAL 48 102 102 VAL VAL C . n C 1 49 LEU 49 103 103 LEU LEU C . n C 1 50 LEU 50 104 104 LEU LEU C . n C 1 51 GLU 51 105 105 GLU GLU C . n C 1 52 PHE 52 106 106 PHE PHE C . n C 1 53 ARG 53 107 107 ARG ARG C . n C 1 54 LYS 54 108 108 LYS LYS C . n C 1 55 LYS 55 109 109 LYS LYS C . n C 1 56 ILE 56 110 110 ILE ILE C . n C 1 57 ALA 57 111 111 ALA ALA C . n C 1 58 GLU 58 112 112 GLU GLU C . n C 1 59 ASN 59 113 113 ASN ASN C . n C 1 60 LYS 60 114 114 LYS LYS C . n C 1 61 ALA 61 115 ? ? ? C . n C 1 62 LYS 62 116 ? ? ? C . n D 1 1 GLY 1 55 ? ? ? D . n D 1 2 GLU 2 56 56 GLU GLU D . n D 1 3 ASP 3 57 57 ASP ASP D . n D 1 4 VAL 4 58 58 VAL VAL D . n D 1 5 PHE 5 59 59 PHE PHE D . n D 1 6 GLU 6 60 60 GLU GLU D . n D 1 7 VAL 7 61 61 VAL VAL D . n D 1 8 GLU 8 62 62 GLU GLU D . n D 1 9 LYS 9 63 63 LYS LYS D . n D 1 10 ILE 10 64 64 ILE ILE D . n D 1 11 LEU 11 65 65 LEU LEU D . n D 1 12 ASP 12 66 66 ASP ASP D . n D 1 13 MET 13 67 67 MET MET D . n D 1 14 LYS 14 68 68 LYS LYS D . n D 1 15 THR 15 69 69 THR THR D . n D 1 16 GLU 16 70 70 GLU GLU D . n D 1 17 GLY 17 71 71 GLY GLY D . n D 1 18 GLY 18 72 72 GLY GLY D . n D 1 19 LYS 19 73 73 LYS LYS D . n D 1 20 VAL 20 74 74 VAL VAL D . n D 1 21 LEU 21 75 75 LEU LEU D . n D 1 22 TYR 22 76 76 TYR TYR D . n D 1 23 LYS 23 77 77 LYS LYS D . n D 1 24 VAL 24 78 78 VAL VAL D . n D 1 25 ARG 25 79 79 ARG ARG D . n D 1 26 TRP 26 80 80 TRP TRP D . n D 1 27 LYS 27 81 81 LYS LYS D . n D 1 28 GLY 28 82 82 GLY GLY D . n D 1 29 TYR 29 83 83 TYR TYR D . n D 1 30 THR 30 84 84 THR THR D . n D 1 31 SER 31 85 85 SER SER D . n D 1 32 ASP 32 86 86 ASP ASP D . n D 1 33 ASP 33 87 87 ASP ASP D . n D 1 34 ASP 34 88 88 ASP ASP D . n D 1 35 THR 35 89 89 THR THR D . n D 1 36 TRP 36 90 90 TRP TRP D . n D 1 37 GLU 37 91 91 GLU GLU D . n D 1 38 PRO 38 92 92 PRO PRO D . n D 1 39 GLU 39 93 93 GLU GLU D . n D 1 40 ILE 40 94 94 ILE ILE D . n D 1 41 HIS 41 95 95 HIS HIS D . n D 1 42 LEU 42 96 96 LEU LEU D . n D 1 43 GLU 43 97 97 GLU GLU D . n D 1 44 ASP 44 98 98 ASP ASP D . n D 1 45 CYS 45 99 99 CYS CYS D . n D 1 46 LYS 46 100 100 LYS LYS D . n D 1 47 GLU 47 101 101 GLU GLU D . n D 1 48 VAL 48 102 102 VAL VAL D . n D 1 49 LEU 49 103 103 LEU LEU D . n D 1 50 LEU 50 104 104 LEU LEU D . n D 1 51 GLU 51 105 105 GLU GLU D . n D 1 52 PHE 52 106 106 PHE PHE D . n D 1 53 ARG 53 107 107 ARG ARG D . n D 1 54 LYS 54 108 108 LYS LYS D . n D 1 55 LYS 55 109 109 LYS LYS D . n D 1 56 ILE 56 110 110 ILE ILE D . n D 1 57 ALA 57 111 111 ALA ALA D . n D 1 58 GLU 58 112 112 GLU GLU D . n D 1 59 ASN 59 113 113 ASN ASN D . n D 1 60 LYS 60 114 114 LYS LYS D . n D 1 61 ALA 61 115 ? ? ? D . n D 1 62 LYS 62 116 ? ? ? D . n E 2 1 ALA 1 1 ? ? ? E . n E 2 2 ARG 2 2 ? ? ? E . n E 2 3 THR 3 3 ? ? ? E . n E 2 4 LYS 4 4 4 LYS LYS E . n E 2 5 GLN 5 5 5 GLN GLN E . n E 2 6 THR 6 6 6 THR THR E . n E 2 7 ALA 7 7 7 ALA ALA E . n E 2 8 ARG 8 8 8 ARG ARG E . n E 2 9 M3L 9 9 9 M3L M3L E . n E 2 10 SER 10 10 10 SER SER E . n E 2 11 THR 11 11 11 THR THR E . n E 2 12 GLY 12 12 12 GLY GLY E . n E 2 13 GLY 13 13 13 GLY GLY E . n E 2 14 LYS 14 14 14 LYS LYS E . n E 2 15 ALA 15 15 15 ALA ALA E . n F 2 1 ALA 1 1 ? ? ? F . n F 2 2 ARG 2 2 2 ARG ARG F . n F 2 3 THR 3 3 3 THR THR F . n F 2 4 LYS 4 4 4 LYS LYS F . n F 2 5 GLN 5 5 5 GLN GLN F . n F 2 6 THR 6 6 6 THR THR F . n F 2 7 ALA 7 7 7 ALA ALA F . n F 2 8 ARG 8 8 8 ARG ARG F . n F 2 9 M3L 9 9 9 M3L M3L F . n F 2 10 SER 10 10 10 SER SER F . n F 2 11 THR 11 11 11 THR THR F . n F 2 12 GLY 12 12 12 GLY GLY F . n F 2 13 GLY 13 13 13 GLY GLY F . n F 2 14 LYS 14 14 14 LYS LYS F . n F 2 15 ALA 15 15 15 ALA ALA F . n G 2 1 ALA 1 1 ? ? ? G . n G 2 2 ARG 2 2 ? ? ? G . n G 2 3 THR 3 3 ? ? ? G . n G 2 4 LYS 4 4 4 LYS LYS G . n G 2 5 GLN 5 5 5 GLN GLN G . n G 2 6 THR 6 6 6 THR THR G . n G 2 7 ALA 7 7 7 ALA ALA G . n G 2 8 ARG 8 8 8 ARG ARG G . n G 2 9 M3L 9 9 9 M3L M3L G . n G 2 10 SER 10 10 10 SER SER G . n G 2 11 THR 11 11 11 THR THR G . n G 2 12 GLY 12 12 12 GLY GLY G . n G 2 13 GLY 13 13 13 GLY GLY G . n G 2 14 LYS 14 14 14 LYS LYS G . n G 2 15 ALA 15 15 15 ALA ALA G . n H 2 1 ALA 1 1 ? ? ? H . n H 2 2 ARG 2 2 ? ? ? H . n H 2 3 THR 3 3 ? ? ? H . n H 2 4 LYS 4 4 4 LYS LYS H . n H 2 5 GLN 5 5 5 GLN GLN H . n H 2 6 THR 6 6 6 THR THR H . n H 2 7 ALA 7 7 7 ALA ALA H . n H 2 8 ARG 8 8 8 ARG ARG H . n H 2 9 M3L 9 9 9 M3L M3L H . n H 2 10 SER 10 10 10 SER SER H . n H 2 11 THR 11 11 11 THR THR H . n H 2 12 GLY 12 12 12 GLY GLY H . n H 2 13 GLY 13 13 13 GLY GLY H . n H 2 14 LYS 14 14 14 LYS LYS H . n H 2 15 ALA 15 15 15 ALA ALA H . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 UNX 1 2 2 UNX UNX A . J 3 UNX 1 1 1 UNX UNX C . K 3 UNX 1 3 3 UNX UNX D . L 4 HOH 1 6 6 HOH HOH A . L 4 HOH 2 7 7 HOH HOH A . L 4 HOH 3 8 8 HOH HOH A . L 4 HOH 4 19 19 HOH HOH A . L 4 HOH 5 21 21 HOH HOH A . L 4 HOH 6 24 24 HOH HOH A . L 4 HOH 7 25 25 HOH HOH A . L 4 HOH 8 26 26 HOH HOH A . L 4 HOH 9 27 27 HOH HOH A . L 4 HOH 10 28 28 HOH HOH A . L 4 HOH 11 29 29 HOH HOH A . L 4 HOH 12 30 30 HOH HOH A . L 4 HOH 13 31 31 HOH HOH A . L 4 HOH 14 32 32 HOH HOH A . L 4 HOH 15 33 33 HOH HOH A . L 4 HOH 16 35 35 HOH HOH A . L 4 HOH 17 36 36 HOH HOH A . L 4 HOH 18 37 37 HOH HOH A . L 4 HOH 19 45 45 HOH HOH A . L 4 HOH 20 46 46 HOH HOH A . L 4 HOH 21 53 53 HOH HOH A . L 4 HOH 22 117 81 HOH HOH A . L 4 HOH 23 118 83 HOH HOH A . L 4 HOH 24 119 85 HOH HOH A . L 4 HOH 25 120 86 HOH HOH A . M 4 HOH 1 9 9 HOH HOH B . M 4 HOH 2 10 10 HOH HOH B . M 4 HOH 3 11 11 HOH HOH B . M 4 HOH 4 12 12 HOH HOH B . M 4 HOH 5 22 22 HOH HOH B . M 4 HOH 6 49 49 HOH HOH B . M 4 HOH 7 50 50 HOH HOH B . M 4 HOH 8 51 51 HOH HOH B . M 4 HOH 9 52 52 HOH HOH B . M 4 HOH 10 117 64 HOH HOH B . M 4 HOH 11 118 65 HOH HOH B . M 4 HOH 12 119 66 HOH HOH B . M 4 HOH 13 120 67 HOH HOH B . M 4 HOH 14 121 68 HOH HOH B . M 4 HOH 15 122 69 HOH HOH B . M 4 HOH 16 123 70 HOH HOH B . M 4 HOH 17 124 71 HOH HOH B . M 4 HOH 18 125 72 HOH HOH B . M 4 HOH 19 126 73 HOH HOH B . M 4 HOH 20 127 87 HOH HOH B . M 4 HOH 21 128 88 HOH HOH B . N 4 HOH 1 2 2 HOH HOH C . N 4 HOH 2 13 13 HOH HOH C . N 4 HOH 3 14 14 HOH HOH C . N 4 HOH 4 15 15 HOH HOH C . N 4 HOH 5 16 16 HOH HOH C . N 4 HOH 6 17 17 HOH HOH C . N 4 HOH 7 18 18 HOH HOH C . N 4 HOH 8 34 34 HOH HOH C . N 4 HOH 9 38 38 HOH HOH C . N 4 HOH 10 39 39 HOH HOH C . N 4 HOH 11 40 40 HOH HOH C . N 4 HOH 12 41 41 HOH HOH C . N 4 HOH 13 42 42 HOH HOH C . N 4 HOH 14 43 43 HOH HOH C . N 4 HOH 15 44 44 HOH HOH C . N 4 HOH 16 54 54 HOH HOH C . N 4 HOH 17 117 1 HOH HOH C . N 4 HOH 18 118 55 HOH HOH C . N 4 HOH 19 119 56 HOH HOH C . N 4 HOH 20 120 57 HOH HOH C . N 4 HOH 21 121 58 HOH HOH C . N 4 HOH 22 122 80 HOH HOH C . N 4 HOH 23 123 82 HOH HOH C . N 4 HOH 24 124 91 HOH HOH C . N 4 HOH 25 125 92 HOH HOH C . N 4 HOH 26 126 95 HOH HOH C . O 4 HOH 1 23 23 HOH HOH D . O 4 HOH 2 117 62 HOH HOH D . O 4 HOH 3 118 74 HOH HOH D . O 4 HOH 4 119 75 HOH HOH D . O 4 HOH 5 120 76 HOH HOH D . O 4 HOH 6 121 77 HOH HOH D . O 4 HOH 7 122 89 HOH HOH D . O 4 HOH 8 123 94 HOH HOH D . P 4 HOH 1 20 20 HOH HOH E . P 4 HOH 2 59 59 HOH HOH E . P 4 HOH 3 60 60 HOH HOH E . Q 4 HOH 1 78 78 HOH HOH F . Q 4 HOH 2 79 79 HOH HOH F . Q 4 HOH 3 90 90 HOH HOH F . Q 4 HOH 4 93 93 HOH HOH F . R 4 HOH 1 16 3 HOH HOH G . R 4 HOH 2 17 4 HOH HOH G . R 4 HOH 3 18 5 HOH HOH G . R 4 HOH 4 84 84 HOH HOH G . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 E M3L 9 E M3L 9 ? LYS N-TRIMETHYLLYSINE 2 F M3L 9 F M3L 9 ? LYS N-TRIMETHYLLYSINE 3 G M3L 9 G M3L 9 ? LYS N-TRIMETHYLLYSINE 4 H M3L 9 H M3L 9 ? LYS N-TRIMETHYLLYSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dimeric 2 4 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,I,L,P 2 1 B,F,M,Q 3 1 C,G,J,N,R 4 1 D,H,K,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1190 ? 1 MORE -8 ? 1 'SSA (A^2)' 4870 ? 2 'ABSA (A^2)' 1250 ? 2 MORE -8 ? 2 'SSA (A^2)' 5120 ? 3 'ABSA (A^2)' 1250 ? 3 MORE -7 ? 3 'SSA (A^2)' 4850 ? 4 'ABSA (A^2)' 1250 ? 4 MORE -7 ? 4 'SSA (A^2)' 5020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-10-19 4 'Structure model' 1 3 2012-03-21 5 'Structure model' 1 4 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 5 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 7.6416 23.1219 13.7621 0.1617 0.1160 0.2553 -0.0129 0.0120 -0.0924 8.3645 4.7554 4.1926 -1.0106 0.6883 -1.2499 -0.0851 -0.0024 0.0875 -0.7086 0.5864 -0.0706 0.3101 -0.3619 0.0664 'X-RAY DIFFRACTION' 2 ? refined -28.2140 28.9309 16.1108 0.1182 0.2003 0.0849 0.0110 -0.0539 0.0647 7.2610 6.7971 5.0924 0.2408 -0.9237 2.2377 0.0430 0.0339 -0.0769 -0.7127 -0.4147 -0.4506 0.4189 0.2146 0.1465 'X-RAY DIFFRACTION' 3 ? refined -8.2962 23.7773 -1.0496 0.0937 0.0270 0.2594 0.0016 0.0613 -0.0036 6.2901 3.8660 4.1750 0.6015 2.7645 1.3686 -0.0402 -0.1452 0.1854 0.0310 0.5298 0.0557 0.0724 -0.1993 -0.0438 'X-RAY DIFFRACTION' 4 ? refined -7.7307 7.7953 29.6997 0.2194 0.4412 0.0646 0.0521 0.0386 -0.0035 6.3348 6.7067 7.0467 -1.1084 0.2976 -2.5647 0.0236 0.1873 -0.2109 -0.4549 0.2373 0.3608 0.4417 -0.2768 -0.3277 'X-RAY DIFFRACTION' 5 ? refined 5.6432 18.1418 22.0438 0.2679 0.4094 0.2358 0.0965 -0.0639 -0.1446 12.2690 8.4499 6.6965 5.8094 -3.1847 -3.5280 -0.0158 -0.6403 0.6561 -1.8250 0.7268 -0.2628 -0.0803 -0.2706 -0.0167 'X-RAY DIFFRACTION' 6 ? refined -29.5733 20.1712 13.0099 0.1956 0.1964 0.2996 0.0672 -0.0270 0.0777 12.8424 6.5269 16.5804 2.9100 11.9157 3.4024 0.3221 -0.0128 -0.3093 -0.5702 -0.8140 -0.5267 0.5294 0.8159 -0.0988 'X-RAY DIFFRACTION' 7 ? refined -5.6351 18.7831 -9.5567 0.0986 0.1722 0.1914 -0.0660 0.0113 0.0531 21.5920 20.7885 2.9341 -16.6000 -0.0287 1.0745 0.0645 -0.4343 0.3698 0.9934 0.4975 0.1042 0.0965 -0.1814 0.4417 'X-RAY DIFFRACTION' 8 ? refined -5.7694 16.6567 24.9892 0.2849 0.3819 0.2264 0.1249 -0.0467 -0.0356 24.2297 5.9870 17.4879 1.4668 -17.9224 -1.1334 0.2208 0.1264 -0.3472 -0.5771 1.1764 -0.1679 0.4591 -0.7145 -0.0996 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 57 A 114 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 57 B 114 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 57 C 114 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 D 56 D 114 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 E 4 E 15 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 F 2 F 15 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 G 4 G 15 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 H 4 H 15 ? . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 87 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 UNK _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 UNX _pdbx_validate_close_contact.auth_seq_id_2 1 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.80 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 67 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SD _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 67 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 67 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 89.41 _pdbx_validate_rmsd_angle.angle_target_value 100.20 _pdbx_validate_rmsd_angle.angle_deviation -10.79 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 57 ? CG ? A ASP 3 CG 2 1 Y 1 A ASP 57 ? OD1 ? A ASP 3 OD1 3 1 Y 1 A ASP 57 ? OD2 ? A ASP 3 OD2 4 1 Y 1 A LYS 73 ? CE ? A LYS 19 CE 5 1 Y 1 A LYS 73 ? NZ ? A LYS 19 NZ 6 1 Y 1 A ILE 94 ? CG1 ? A ILE 40 CG1 7 1 Y 1 A ILE 94 ? CG2 ? A ILE 40 CG2 8 1 Y 1 A ILE 94 ? CD1 ? A ILE 40 CD1 9 1 Y 1 A GLU 97 ? CG ? A GLU 43 CG 10 1 Y 1 A GLU 97 ? CD ? A GLU 43 CD 11 1 Y 1 A GLU 97 ? OE1 ? A GLU 43 OE1 12 1 Y 1 A GLU 97 ? OE2 ? A GLU 43 OE2 13 1 Y 1 A LYS 100 ? CD ? A LYS 46 CD 14 1 Y 1 A LYS 100 ? CE ? A LYS 46 CE 15 1 Y 1 A LYS 100 ? NZ ? A LYS 46 NZ 16 1 Y 1 A GLU 101 ? CG ? A GLU 47 CG 17 1 Y 1 A GLU 101 ? CD ? A GLU 47 CD 18 1 Y 1 A GLU 101 ? OE1 ? A GLU 47 OE1 19 1 Y 1 A GLU 101 ? OE2 ? A GLU 47 OE2 20 1 Y 1 A GLU 105 ? CG ? A GLU 51 CG 21 1 Y 1 A GLU 105 ? CD ? A GLU 51 CD 22 1 Y 1 A GLU 105 ? OE1 ? A GLU 51 OE1 23 1 Y 1 A GLU 105 ? OE2 ? A GLU 51 OE2 24 1 Y 1 A LYS 108 ? CG ? A LYS 54 CG 25 1 Y 1 A LYS 108 ? CD ? A LYS 54 CD 26 1 Y 1 A LYS 108 ? CE ? A LYS 54 CE 27 1 Y 1 A LYS 108 ? NZ ? A LYS 54 NZ 28 1 Y 1 A LYS 109 ? CG ? A LYS 55 CG 29 1 Y 1 A LYS 109 ? CD ? A LYS 55 CD 30 1 Y 1 A LYS 109 ? CE ? A LYS 55 CE 31 1 Y 1 A LYS 109 ? NZ ? A LYS 55 NZ 32 1 Y 1 B LYS 63 ? CE ? B LYS 9 CE 33 1 Y 1 B LYS 63 ? NZ ? B LYS 9 NZ 34 1 Y 1 B LYS 73 ? NZ ? B LYS 19 NZ 35 1 Y 1 B ILE 94 ? CG1 ? B ILE 40 CG1 36 1 Y 1 B ILE 94 ? CG2 ? B ILE 40 CG2 37 1 Y 1 B ILE 94 ? CD1 ? B ILE 40 CD1 38 1 Y 1 B GLU 97 ? CG ? B GLU 43 CG 39 1 Y 1 B GLU 97 ? CD ? B GLU 43 CD 40 1 Y 1 B GLU 97 ? OE1 ? B GLU 43 OE1 41 1 Y 1 B GLU 97 ? OE2 ? B GLU 43 OE2 42 1 Y 1 B LYS 100 ? CG ? B LYS 46 CG 43 1 Y 1 B LYS 100 ? CD ? B LYS 46 CD 44 1 Y 1 B LYS 100 ? CE ? B LYS 46 CE 45 1 Y 1 B LYS 100 ? NZ ? B LYS 46 NZ 46 1 Y 1 B GLU 101 ? CG ? B GLU 47 CG 47 1 Y 1 B GLU 101 ? CD ? B GLU 47 CD 48 1 Y 1 B GLU 101 ? OE1 ? B GLU 47 OE1 49 1 Y 1 B GLU 101 ? OE2 ? B GLU 47 OE2 50 1 Y 1 B GLU 105 ? CG ? B GLU 51 CG 51 1 Y 1 B GLU 105 ? CD ? B GLU 51 CD 52 1 Y 1 B GLU 105 ? OE1 ? B GLU 51 OE1 53 1 Y 1 B GLU 105 ? OE2 ? B GLU 51 OE2 54 1 Y 1 B LYS 108 ? CE ? B LYS 54 CE 55 1 Y 1 B LYS 108 ? NZ ? B LYS 54 NZ 56 1 Y 1 B LYS 109 ? CG ? B LYS 55 CG 57 1 Y 1 B LYS 109 ? CD ? B LYS 55 CD 58 1 Y 1 B LYS 109 ? CE ? B LYS 55 CE 59 1 Y 1 B LYS 109 ? NZ ? B LYS 55 NZ 60 1 Y 1 C ASP 57 ? CG ? C ASP 3 CG 61 1 Y 1 C ASP 57 ? OD1 ? C ASP 3 OD1 62 1 Y 1 C ASP 57 ? OD2 ? C ASP 3 OD2 63 1 Y 1 C LYS 73 ? CE ? C LYS 19 CE 64 1 Y 1 C LYS 73 ? NZ ? C LYS 19 NZ 65 1 Y 1 C ILE 94 ? CG1 ? C ILE 40 CG1 66 1 Y 1 C ILE 94 ? CG2 ? C ILE 40 CG2 67 1 Y 1 C ILE 94 ? CD1 ? C ILE 40 CD1 68 1 Y 1 C GLU 97 ? CG ? C GLU 43 CG 69 1 Y 1 C GLU 97 ? CD ? C GLU 43 CD 70 1 Y 1 C GLU 97 ? OE1 ? C GLU 43 OE1 71 1 Y 1 C GLU 97 ? OE2 ? C GLU 43 OE2 72 1 Y 1 C LYS 100 ? CG ? C LYS 46 CG 73 1 Y 1 C LYS 100 ? CD ? C LYS 46 CD 74 1 Y 1 C LYS 100 ? CE ? C LYS 46 CE 75 1 Y 1 C LYS 100 ? NZ ? C LYS 46 NZ 76 1 Y 1 C GLU 101 ? CG ? C GLU 47 CG 77 1 Y 1 C GLU 101 ? CD ? C GLU 47 CD 78 1 Y 1 C GLU 101 ? OE1 ? C GLU 47 OE1 79 1 Y 1 C GLU 101 ? OE2 ? C GLU 47 OE2 80 1 Y 1 C GLU 105 ? CG ? C GLU 51 CG 81 1 Y 1 C GLU 105 ? CD ? C GLU 51 CD 82 1 Y 1 C GLU 105 ? OE1 ? C GLU 51 OE1 83 1 Y 1 C GLU 105 ? OE2 ? C GLU 51 OE2 84 1 Y 1 C ARG 107 ? NE ? C ARG 53 NE 85 1 Y 1 C ARG 107 ? CZ ? C ARG 53 CZ 86 1 Y 1 C ARG 107 ? NH1 ? C ARG 53 NH1 87 1 Y 1 C ARG 107 ? NH2 ? C ARG 53 NH2 88 1 Y 1 C LYS 108 ? CG ? C LYS 54 CG 89 1 Y 1 C LYS 108 ? CD ? C LYS 54 CD 90 1 Y 1 C LYS 108 ? CE ? C LYS 54 CE 91 1 Y 1 C LYS 108 ? NZ ? C LYS 54 NZ 92 1 Y 1 C LYS 109 ? CG ? C LYS 55 CG 93 1 Y 1 C LYS 109 ? CD ? C LYS 55 CD 94 1 Y 1 C LYS 109 ? CE ? C LYS 55 CE 95 1 Y 1 C LYS 109 ? NZ ? C LYS 55 NZ 96 1 Y 1 D GLU 56 ? CG ? D GLU 2 CG 97 1 Y 1 D GLU 56 ? CD ? D GLU 2 CD 98 1 Y 1 D GLU 56 ? OE1 ? D GLU 2 OE1 99 1 Y 1 D GLU 56 ? OE2 ? D GLU 2 OE2 100 1 Y 1 D LYS 81 ? CE ? D LYS 27 CE 101 1 Y 1 D LYS 81 ? NZ ? D LYS 27 NZ 102 1 Y 1 D ILE 94 ? CG1 ? D ILE 40 CG1 103 1 Y 1 D ILE 94 ? CG2 ? D ILE 40 CG2 104 1 Y 1 D ILE 94 ? CD1 ? D ILE 40 CD1 105 1 Y 1 D GLU 97 ? CG ? D GLU 43 CG 106 1 Y 1 D GLU 97 ? CD ? D GLU 43 CD 107 1 Y 1 D GLU 97 ? OE1 ? D GLU 43 OE1 108 1 Y 1 D GLU 97 ? OE2 ? D GLU 43 OE2 109 1 Y 1 D LYS 100 ? CD ? D LYS 46 CD 110 1 Y 1 D LYS 100 ? CE ? D LYS 46 CE 111 1 Y 1 D LYS 100 ? NZ ? D LYS 46 NZ 112 1 Y 1 D GLU 101 ? CG ? D GLU 47 CG 113 1 Y 1 D GLU 101 ? CD ? D GLU 47 CD 114 1 Y 1 D GLU 101 ? OE1 ? D GLU 47 OE1 115 1 Y 1 D GLU 101 ? OE2 ? D GLU 47 OE2 116 1 Y 1 D GLU 105 ? CG ? D GLU 51 CG 117 1 Y 1 D GLU 105 ? CD ? D GLU 51 CD 118 1 Y 1 D GLU 105 ? OE1 ? D GLU 51 OE1 119 1 Y 1 D GLU 105 ? OE2 ? D GLU 51 OE2 120 1 Y 1 D LYS 109 ? CG ? D LYS 55 CG 121 1 Y 1 D LYS 109 ? CD ? D LYS 55 CD 122 1 Y 1 D LYS 109 ? CE ? D LYS 55 CE 123 1 Y 1 D LYS 109 ? NZ ? D LYS 55 NZ 124 1 Y 1 E LYS 4 ? CG ? E LYS 4 CG 125 1 Y 1 E LYS 4 ? CD ? E LYS 4 CD 126 1 Y 1 E LYS 4 ? CE ? E LYS 4 CE 127 1 Y 1 E LYS 4 ? NZ ? E LYS 4 NZ 128 1 Y 1 E ARG 8 ? NE ? E ARG 8 NE 129 1 Y 1 E ARG 8 ? CZ ? E ARG 8 CZ 130 1 Y 1 E ARG 8 ? NH1 ? E ARG 8 NH1 131 1 Y 1 E ARG 8 ? NH2 ? E ARG 8 NH2 132 1 Y 1 E LYS 14 ? CE ? E LYS 14 CE 133 1 Y 1 E LYS 14 ? NZ ? E LYS 14 NZ 134 1 Y 1 F ARG 2 ? CG ? F ARG 2 CG 135 1 Y 1 F ARG 2 ? CD ? F ARG 2 CD 136 1 Y 1 F ARG 2 ? NE ? F ARG 2 NE 137 1 Y 1 F ARG 2 ? CZ ? F ARG 2 CZ 138 1 Y 1 F ARG 2 ? NH1 ? F ARG 2 NH1 139 1 Y 1 F ARG 2 ? NH2 ? F ARG 2 NH2 140 1 Y 1 F THR 3 ? OG1 ? F THR 3 OG1 141 1 Y 1 F THR 3 ? CG2 ? F THR 3 CG2 142 1 Y 1 G LYS 4 ? CG ? G LYS 4 CG 143 1 Y 1 G LYS 4 ? CD ? G LYS 4 CD 144 1 Y 1 G LYS 4 ? CE ? G LYS 4 CE 145 1 Y 1 G LYS 4 ? NZ ? G LYS 4 NZ 146 1 Y 1 G LYS 14 ? NZ ? G LYS 14 NZ 147 1 Y 1 H LYS 4 ? CG ? H LYS 4 CG 148 1 Y 1 H LYS 4 ? CD ? H LYS 4 CD 149 1 Y 1 H LYS 4 ? CE ? H LYS 4 CE 150 1 Y 1 H LYS 4 ? NZ ? H LYS 4 NZ 151 1 Y 1 H LYS 14 ? CD ? H LYS 14 CD 152 1 Y 1 H LYS 14 ? CE ? H LYS 14 CE 153 1 Y 1 H LYS 14 ? NZ ? H LYS 14 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 55 ? A GLY 1 2 1 Y 1 A GLU 56 ? A GLU 2 3 1 Y 1 A ALA 115 ? A ALA 61 4 1 Y 1 A LYS 116 ? A LYS 62 5 1 Y 1 B GLY 55 ? B GLY 1 6 1 Y 1 B GLU 56 ? B GLU 2 7 1 Y 1 B ALA 115 ? B ALA 61 8 1 Y 1 B LYS 116 ? B LYS 62 9 1 Y 1 C GLY 55 ? C GLY 1 10 1 Y 1 C GLU 56 ? C GLU 2 11 1 Y 1 C ALA 115 ? C ALA 61 12 1 Y 1 C LYS 116 ? C LYS 62 13 1 Y 1 D GLY 55 ? D GLY 1 14 1 Y 1 D ALA 115 ? D ALA 61 15 1 Y 1 D LYS 116 ? D LYS 62 16 1 Y 1 E ALA 1 ? E ALA 1 17 1 Y 1 E ARG 2 ? E ARG 2 18 1 Y 1 E THR 3 ? E THR 3 19 1 Y 1 F ALA 1 ? F ALA 1 20 1 Y 1 G ALA 1 ? G ALA 1 21 1 Y 1 G ARG 2 ? G ARG 2 22 1 Y 1 G THR 3 ? G THR 3 23 1 Y 1 H ALA 1 ? H ALA 1 24 1 Y 1 H ARG 2 ? H ARG 2 25 1 Y 1 H THR 3 ? H THR 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH #