HEADER CELL CYCLE 24-MAR-11 3R93 TITLE CRYSTAL STRUCTURE OF THE CHROMO DOMAIN OF M-PHASE PHOSPHOPROTEIN 8 TITLE 2 BOUND TO H3K9ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: M-PHASE PHOSPHOPROTEIN 8; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TWO HYBRID-ASSOCIATED PROTEIN 3 WITH RANBPM, TWA3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: H3K9ME3 PEPTIDE; COMPND 8 CHAIN: E, F, G, H; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPHOSPH8, MPP8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS EPIGENETICS, CELL CYCLE, M-PHASE, CHROMODOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,Z.LI,J.RUAN,C.XU,Y.TONG,P.W.PAN,W.TEMPEL,L.CROMBET,J.MIN,J.ZANG, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 13-SEP-23 3R93 1 LINK REVDAT 4 08-NOV-17 3R93 1 REMARK REVDAT 3 21-MAR-12 3R93 1 JRNL REVDAT 2 19-OCT-11 3R93 1 JRNL VERSN REVDAT 1 06-APR-11 3R93 0 JRNL AUTH J.LI,Z.LI,J.RUAN,C.XU,Y.TONG,P.W.PAN,W.TEMPEL,L.CROMBET, JRNL AUTH 2 J.MIN,J.ZANG JRNL TITL STRUCTURAL BASIS FOR SPECIFIC BINDING OF HUMAN MPP8 JRNL TITL 2 CHROMODOMAIN TO HISTONE H3 METHYLATED AT LYSINE 9. JRNL REF PLOS ONE V. 6 25104 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 22022377 JRNL DOI 10.1371/JOURNAL.PONE.0025104 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.103 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1645 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.82800 REMARK 3 B22 (A**2) : 0.90300 REMARK 3 B33 (A**2) : 1.92500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.486 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2210 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1478 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2980 ; 1.369 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3616 ; 0.803 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 5.878 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;38.148 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;14.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2419 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 0.579 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 574 ; 0.138 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2196 ; 1.142 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 819 ; 2.019 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 784 ; 3.238 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6416 23.1219 13.7621 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.1160 REMARK 3 T33: 0.2553 T12: -0.0129 REMARK 3 T13: 0.0120 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 8.3645 L22: 4.7554 REMARK 3 L33: 4.1926 L12: -1.0106 REMARK 3 L13: 0.6883 L23: -1.2499 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: -0.7086 S13: 0.5864 REMARK 3 S21: 0.3101 S22: -0.0024 S23: -0.0706 REMARK 3 S31: -0.3619 S32: 0.0664 S33: 0.0875 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -28.2140 28.9309 16.1108 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.2003 REMARK 3 T33: 0.0849 T12: 0.0110 REMARK 3 T13: -0.0539 T23: 0.0647 REMARK 3 L TENSOR REMARK 3 L11: 7.2610 L22: 6.7971 REMARK 3 L33: 5.0924 L12: 0.2408 REMARK 3 L13: -0.9237 L23: 2.2377 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: -0.7127 S13: -0.4147 REMARK 3 S21: 0.4189 S22: 0.0339 S23: -0.4506 REMARK 3 S31: 0.2146 S32: 0.1465 S33: -0.0769 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 57 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2962 23.7773 -1.0496 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.0270 REMARK 3 T33: 0.2594 T12: 0.0016 REMARK 3 T13: 0.0613 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 6.2901 L22: 3.8660 REMARK 3 L33: 4.1750 L12: 0.6015 REMARK 3 L13: 2.7645 L23: 1.3686 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.0310 S13: 0.5298 REMARK 3 S21: 0.0724 S22: -0.1452 S23: 0.0557 REMARK 3 S31: -0.1993 S32: -0.0438 S33: 0.1854 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 56 D 114 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7307 7.7953 29.6997 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.4412 REMARK 3 T33: 0.0646 T12: 0.0521 REMARK 3 T13: 0.0386 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 6.3348 L22: 6.7067 REMARK 3 L33: 7.0467 L12: -1.1084 REMARK 3 L13: 0.2976 L23: -2.5647 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.4549 S13: 0.2373 REMARK 3 S21: 0.4417 S22: 0.1873 S23: 0.3608 REMARK 3 S31: -0.2768 S32: -0.3277 S33: -0.2109 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 4 E 15 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6432 18.1418 22.0438 REMARK 3 T TENSOR REMARK 3 T11: 0.2679 T22: 0.4094 REMARK 3 T33: 0.2358 T12: 0.0965 REMARK 3 T13: -0.0639 T23: -0.1446 REMARK 3 L TENSOR REMARK 3 L11: 12.2690 L22: 8.4499 REMARK 3 L33: 6.6965 L12: 5.8094 REMARK 3 L13: -3.1847 L23: -3.5280 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -1.8250 S13: 0.7268 REMARK 3 S21: -0.0803 S22: -0.6403 S23: -0.2628 REMARK 3 S31: -0.2706 S32: -0.0167 S33: 0.6561 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2 F 15 REMARK 3 ORIGIN FOR THE GROUP (A): -29.5733 20.1712 13.0099 REMARK 3 T TENSOR REMARK 3 T11: 0.1956 T22: 0.1964 REMARK 3 T33: 0.2996 T12: 0.0672 REMARK 3 T13: -0.0270 T23: 0.0777 REMARK 3 L TENSOR REMARK 3 L11: 12.8424 L22: 6.5269 REMARK 3 L33: 16.5804 L12: 2.9100 REMARK 3 L13: 11.9157 L23: 3.4024 REMARK 3 S TENSOR REMARK 3 S11: 0.3221 S12: -0.5702 S13: -0.8140 REMARK 3 S21: 0.5294 S22: -0.0128 S23: -0.5267 REMARK 3 S31: 0.8159 S32: -0.0988 S33: -0.3093 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 4 G 15 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6351 18.7831 -9.5567 REMARK 3 T TENSOR REMARK 3 T11: 0.0986 T22: 0.1722 REMARK 3 T33: 0.1914 T12: -0.0660 REMARK 3 T13: 0.0113 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 21.5920 L22: 20.7885 REMARK 3 L33: 2.9341 L12: -16.6000 REMARK 3 L13: -0.0287 L23: 1.0745 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.9934 S13: 0.4975 REMARK 3 S21: 0.0965 S22: -0.4343 S23: 0.1042 REMARK 3 S31: -0.1814 S32: 0.4417 S33: 0.3698 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 4 H 15 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7694 16.6567 24.9892 REMARK 3 T TENSOR REMARK 3 T11: 0.2849 T22: 0.3819 REMARK 3 T33: 0.2264 T12: 0.1249 REMARK 3 T13: -0.0467 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 24.2297 L22: 5.9870 REMARK 3 L33: 17.4879 L12: 1.4668 REMARK 3 L13: -17.9224 L23: -1.1334 REMARK 3 S TENSOR REMARK 3 S11: 0.2208 S12: -0.5771 S13: 1.1764 REMARK 3 S21: 0.4591 S22: 0.1264 S23: -0.1679 REMARK 3 S31: -0.7145 S32: -0.0996 S33: -0.3472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. THE PROGRAMS BUCCANEER, COOT REMARK 3 WERE USED AS WELL AS THE MOLPROBITY SERVER. REMARK 4 REMARK 4 3R93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24361 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.73500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LWE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG2000-MME, 8-FOLD EXCESS OF REMARK 280 H3K9ME3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.57400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.00250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.57400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.00250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY INFORMATION FOR REMARK 300 THE STRUCTURE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 55 REMARK 465 GLU A 56 REMARK 465 ALA A 115 REMARK 465 LYS A 116 REMARK 465 GLY B 55 REMARK 465 GLU B 56 REMARK 465 ALA B 115 REMARK 465 LYS B 116 REMARK 465 GLY C 55 REMARK 465 GLU C 56 REMARK 465 ALA C 115 REMARK 465 LYS C 116 REMARK 465 GLY D 55 REMARK 465 ALA D 115 REMARK 465 LYS D 116 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 ALA F 1 REMARK 465 ALA G 1 REMARK 465 ARG G 2 REMARK 465 THR G 3 REMARK 465 ALA H 1 REMARK 465 ARG H 2 REMARK 465 THR H 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 LYS A 73 CE NZ REMARK 470 ILE A 94 CG1 CG2 CD1 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 LYS A 100 CD CE NZ REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LYS B 63 CE NZ REMARK 470 LYS B 73 NZ REMARK 470 ILE B 94 CG1 CG2 CD1 REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 108 CE NZ REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 ASP C 57 CG OD1 OD2 REMARK 470 LYS C 73 CE NZ REMARK 470 ILE C 94 CG1 CG2 CD1 REMARK 470 GLU C 97 CG CD OE1 OE2 REMARK 470 LYS C 100 CG CD CE NZ REMARK 470 GLU C 101 CG CD OE1 OE2 REMARK 470 GLU C 105 CG CD OE1 OE2 REMARK 470 ARG C 107 NE CZ NH1 NH2 REMARK 470 LYS C 108 CG CD CE NZ REMARK 470 LYS C 109 CG CD CE NZ REMARK 470 GLU D 56 CG CD OE1 OE2 REMARK 470 LYS D 81 CE NZ REMARK 470 ILE D 94 CG1 CG2 CD1 REMARK 470 GLU D 97 CG CD OE1 OE2 REMARK 470 LYS D 100 CD CE NZ REMARK 470 GLU D 101 CG CD OE1 OE2 REMARK 470 GLU D 105 CG CD OE1 OE2 REMARK 470 LYS D 109 CG CD CE NZ REMARK 470 LYS E 4 CG CD CE NZ REMARK 470 ARG E 8 NE CZ NH1 NH2 REMARK 470 LYS E 14 CE NZ REMARK 470 ARG F 2 CG CD NE CZ NH1 NH2 REMARK 470 THR F 3 OG1 CG2 REMARK 470 LYS G 4 CG CD CE NZ REMARK 470 LYS G 14 NZ REMARK 470 LYS H 4 CG CD CE NZ REMARK 470 LYS H 14 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 87 UNK UNX C 1 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 67 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LWE RELATED DB: PDB DBREF 3R93 A 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 3R93 B 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 3R93 C 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 3R93 D 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 3R93 E 1 15 PDB 3R93 3R93 1 15 DBREF 3R93 F 1 15 PDB 3R93 3R93 1 15 DBREF 3R93 G 1 15 PDB 3R93 3R93 1 15 DBREF 3R93 H 1 15 PDB 3R93 3R93 1 15 SEQRES 1 A 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 A 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 A 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 A 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 A 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 B 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 B 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 B 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 B 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 B 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 C 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 C 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 C 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 C 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 C 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 D 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 D 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 D 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 D 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 D 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 E 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 E 15 LYS ALA SEQRES 1 F 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 F 15 LYS ALA SEQRES 1 G 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 G 15 LYS ALA SEQRES 1 H 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 H 15 LYS ALA MODRES 3R93 M3L E 9 LYS N-TRIMETHYLLYSINE MODRES 3R93 M3L F 9 LYS N-TRIMETHYLLYSINE MODRES 3R93 M3L G 9 LYS N-TRIMETHYLLYSINE MODRES 3R93 M3L H 9 LYS N-TRIMETHYLLYSINE HET M3L E 9 12 HET M3L F 9 12 HET M3L G 9 12 HET M3L H 9 12 HET UNX A 2 1 HET UNX C 1 1 HET UNX D 3 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 5 M3L 4(C9 H21 N2 O2 1+) FORMUL 9 UNX 3(X) FORMUL 12 HOH *91(H2 O) HELIX 1 1 THR A 84 ASP A 87 5 4 HELIX 2 2 ILE A 94 GLU A 97 5 4 HELIX 3 3 CYS A 99 LYS A 114 1 16 HELIX 4 4 THR B 84 ASP B 88 5 5 HELIX 5 5 ILE B 94 LEU B 96 5 3 HELIX 6 6 CYS B 99 ASN B 113 1 15 HELIX 7 7 THR C 84 ASP C 88 5 5 HELIX 8 8 ILE C 94 GLU C 97 5 4 HELIX 9 9 CYS C 99 LYS C 114 1 16 HELIX 10 10 THR D 84 ASP D 87 5 4 HELIX 11 11 ILE D 94 GLU D 97 5 4 HELIX 12 12 CYS D 99 LYS D 114 1 16 SHEET 1 A 5 THR E 6 ARG E 8 0 SHEET 2 A 5 VAL A 58 GLU A 70 -1 N PHE A 59 O ALA E 7 SHEET 3 A 5 LYS A 73 TRP A 80 -1 O LEU A 75 N LYS A 68 SHEET 4 A 5 THR A 89 PRO A 92 -1 O THR A 89 N VAL A 78 SHEET 5 A 5 GLY H 13 LYS H 14 -1 O GLY H 13 N TRP A 90 SHEET 1 B 4 THR B 89 PRO B 92 0 SHEET 2 B 4 LYS B 73 TRP B 80 -1 N VAL B 78 O THR B 89 SHEET 3 B 4 VAL B 58 GLU B 70 -1 N LYS B 68 O LEU B 75 SHEET 4 B 4 THR F 6 ARG F 8 -1 O ALA F 7 N PHE B 59 SHEET 1 C 4 THR C 89 PRO C 92 0 SHEET 2 C 4 LYS C 73 TRP C 80 -1 N VAL C 78 O THR C 89 SHEET 3 C 4 VAL C 58 GLU C 70 -1 N LYS C 68 O LEU C 75 SHEET 4 C 4 THR G 6 ARG G 8 -1 O ALA G 7 N PHE C 59 SHEET 1 D 5 GLY E 13 LYS E 14 0 SHEET 2 D 5 THR D 89 PRO D 92 -1 N TRP D 90 O GLY E 13 SHEET 3 D 5 LYS D 73 TRP D 80 -1 N VAL D 78 O THR D 89 SHEET 4 D 5 VAL D 58 GLU D 70 -1 N LEU D 65 O LYS D 77 SHEET 5 D 5 THR H 6 ARG H 8 -1 O ALA H 7 N PHE D 59 LINK C ARG E 8 N M3L E 9 1555 1555 1.34 LINK C M3L E 9 N SER E 10 1555 1555 1.34 LINK C ARG F 8 N M3L F 9 1555 1555 1.33 LINK C M3L F 9 N SER F 10 1555 1555 1.33 LINK C ARG G 8 N M3L G 9 1555 1555 1.33 LINK C M3L G 9 N SER G 10 1555 1555 1.33 LINK C ARG H 8 N M3L H 9 1555 1555 1.33 LINK C M3L H 9 N SER H 10 1555 1555 1.34 CRYST1 71.148 74.005 72.609 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013772 0.00000 CONECT 1871 1876 CONECT 1876 1871 1877 CONECT 1877 1876 1878 1883 CONECT 1878 1877 1879 CONECT 1879 1878 1880 CONECT 1880 1879 1881 CONECT 1881 1880 1882 CONECT 1882 1881 1885 1886 1887 CONECT 1883 1877 1884 1888 CONECT 1884 1883 CONECT 1885 1882 CONECT 1886 1882 CONECT 1887 1882 CONECT 1888 1883 CONECT 1964 1973 CONECT 1973 1964 1974 CONECT 1974 1973 1975 1980 CONECT 1975 1974 1976 CONECT 1976 1975 1977 CONECT 1977 1976 1978 CONECT 1978 1977 1979 CONECT 1979 1978 1982 1983 1984 CONECT 1980 1974 1981 1985 CONECT 1981 1980 CONECT 1982 1979 CONECT 1983 1979 CONECT 1984 1979 CONECT 1985 1980 CONECT 2049 2058 CONECT 2058 2049 2059 CONECT 2059 2058 2060 2065 CONECT 2060 2059 2061 CONECT 2061 2060 2062 CONECT 2062 2061 2063 CONECT 2063 2062 2064 CONECT 2064 2063 2067 2068 2069 CONECT 2065 2059 2066 2070 CONECT 2066 2065 CONECT 2067 2064 CONECT 2068 2064 CONECT 2069 2064 CONECT 2070 2065 CONECT 2133 2142 CONECT 2142 2133 2143 CONECT 2143 2142 2144 2149 CONECT 2144 2143 2145 CONECT 2145 2144 2146 CONECT 2146 2145 2147 CONECT 2147 2146 2148 CONECT 2148 2147 2151 2152 2153 CONECT 2149 2143 2150 2154 CONECT 2150 2149 CONECT 2151 2148 CONECT 2152 2148 CONECT 2153 2148 CONECT 2154 2149 MASTER 533 0 7 12 18 0 0 6 2272 8 56 28 END