data_3R9L # _entry.id 3R9L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3R9L pdb_00003r9l 10.2210/pdb3r9l/pdb RCSB RCSB064661 ? ? WWPDB D_1000064661 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id GilaA.00438.a _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3R9L _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of nucleoside diphosphate kinase from Giardia lamblia featuring a disordered dinucleotide binding site' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Edwards, T.E.' 1 ? primary 'Gardberg, A.S.' 2 ? primary 'Sankaran, B.' 3 ? primary 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 4 ? # _cell.length_a 116.960 _cell.length_b 116.960 _cell.length_c 62.690 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3R9L _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.entry_id 3R9L _symmetry.Int_Tables_number 182 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 17114.713 1 2.7.4.6 ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMV WEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWSCSLESHIYE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMV WEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWSCSLESHIYE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier GilaA.00438.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 ALA n 1 7 ARG n 1 8 GLU n 1 9 ARG n 1 10 THR n 1 11 PHE n 1 12 LEU n 1 13 MET n 1 14 VAL n 1 15 LYS n 1 16 PRO n 1 17 ASP n 1 18 GLY n 1 19 VAL n 1 20 GLN n 1 21 ARG n 1 22 GLY n 1 23 LEU n 1 24 VAL n 1 25 GLY n 1 26 GLU n 1 27 ILE n 1 28 ILE n 1 29 SER n 1 30 ARG n 1 31 PHE n 1 32 GLU n 1 33 ARG n 1 34 ARG n 1 35 GLY n 1 36 PHE n 1 37 LYS n 1 38 LEU n 1 39 VAL n 1 40 ALA n 1 41 MET n 1 42 LYS n 1 43 PHE n 1 44 PHE n 1 45 VAL n 1 46 PRO n 1 47 SER n 1 48 LYS n 1 49 ASN n 1 50 LEU n 1 51 VAL n 1 52 GLU n 1 53 GLU n 1 54 HIS n 1 55 TYR n 1 56 LYS n 1 57 GLU n 1 58 HIS n 1 59 ALA n 1 60 ALA n 1 61 ARG n 1 62 PRO n 1 63 PHE n 1 64 PHE n 1 65 ALA n 1 66 GLY n 1 67 LEU n 1 68 CYS n 1 69 LYS n 1 70 PHE n 1 71 LEU n 1 72 SER n 1 73 SER n 1 74 GLY n 1 75 PRO n 1 76 VAL n 1 77 CYS n 1 78 ALA n 1 79 MET n 1 80 VAL n 1 81 TRP n 1 82 GLU n 1 83 GLY n 1 84 ALA n 1 85 ASN n 1 86 VAL n 1 87 VAL n 1 88 SER n 1 89 ILE n 1 90 SER n 1 91 ARG n 1 92 THR n 1 93 MET n 1 94 MET n 1 95 GLY n 1 96 VAL n 1 97 THR n 1 98 LYS n 1 99 PRO n 1 100 ALA n 1 101 GLU n 1 102 SER n 1 103 ALA n 1 104 PRO n 1 105 GLY n 1 106 THR n 1 107 ILE n 1 108 ARG n 1 109 GLY n 1 110 ASP n 1 111 PHE n 1 112 GLY n 1 113 ILE n 1 114 ASP n 1 115 VAL n 1 116 GLY n 1 117 ARG n 1 118 ASN n 1 119 ILE n 1 120 ILE n 1 121 HIS n 1 122 GLY n 1 123 SER n 1 124 ALA n 1 125 ASN n 1 126 LEU n 1 127 ASP n 1 128 ASP n 1 129 ALA n 1 130 ALA n 1 131 ARG n 1 132 GLU n 1 133 ILE n 1 134 ALA n 1 135 LEU n 1 136 TRP n 1 137 PHE n 1 138 LYS n 1 139 PRO n 1 140 GLU n 1 141 GLU n 1 142 VAL n 1 143 ALA n 1 144 SER n 1 145 TRP n 1 146 SER n 1 147 CYS n 1 148 SER n 1 149 LEU n 1 150 GLU n 1 151 SER n 1 152 HIS n 1 153 ILE n 1 154 TYR n 1 155 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GL50803_11301 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 50803 / WB clone C6' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Giardia lamblia' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 184922 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pAVA0421 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A8BMG9_GIAIC _struct_ref.pdbx_db_accession A8BMG9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGA NVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWSCSLESHIYE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3R9L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 155 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A8BMG9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 151 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 151 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3R9L GLY A 1 ? UNP A8BMG9 ? ? 'expression tag' -3 1 1 3R9L PRO A 2 ? UNP A8BMG9 ? ? 'expression tag' -2 2 1 3R9L GLY A 3 ? UNP A8BMG9 ? ? 'expression tag' -1 3 1 3R9L SER A 4 ? UNP A8BMG9 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3R9L _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.62 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 65.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.9 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;GilaA.00438.a.A1 PW27083 at 24.97 mg/mL in 25 mM Hepes pH 7.0, 0.5 M NaCl, 5% glycerol, 2 mM DTT, 0.025% azide against CSHT C11 focus screen 0.1 M Hepes pH 7.0, 0.9 M Na phosphate, 0.9 M K phosphate with 25% ethylene glycol as cryo-protectant, crystal tracking ID 216300h9, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-03-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97946 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 # _reflns.entry_id 3R9L _reflns.d_resolution_high 2.650 _reflns.number_obs 7665 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_sigmaI 26.020 _reflns.percent_possible_obs 98.800 _reflns.B_iso_Wilson_estimate 60.858 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.number_all 7760 _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 5.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.650 2.720 3384 ? 567 0.526 3.260 ? ? 6.0 ? 567 100.000 ? 1 2.720 2.790 3084 ? 520 0.431 3.920 ? ? ? ? ? 99.800 ? 2 2.790 2.870 3232 ? 541 0.372 4.630 ? ? ? ? ? 100.000 ? 3 2.870 2.960 3005 ? 509 0.275 5.950 ? ? ? ? ? 100.000 ? 4 2.960 3.060 2876 ? 494 0.176 9.180 ? ? ? ? ? 99.800 ? 5 3.060 3.170 2936 ? 496 0.156 10.000 ? ? ? ? ? 100.000 ? 6 3.170 3.290 2739 ? 461 0.133 12.460 ? ? ? ? ? 99.800 ? 7 3.290 3.420 2634 ? 452 0.089 18.530 ? ? ? ? ? 100.000 ? 8 3.420 3.570 2512 ? 435 0.063 24.510 ? ? ? ? ? 99.500 ? 9 3.570 3.750 2446 ? 418 0.052 29.590 ? ? ? ? ? 99.500 ? 10 3.750 3.950 2301 ? 395 0.038 36.710 ? ? ? ? ? 99.000 ? 11 3.950 4.190 2181 ? 379 0.031 45.050 ? ? ? ? ? 98.400 ? 12 4.190 4.480 1960 ? 351 0.029 48.620 ? ? ? ? ? 99.200 ? 13 4.480 4.840 1827 ? 333 0.026 54.420 ? ? ? ? ? 98.200 ? 14 4.840 5.300 1698 ? 307 0.028 50.250 ? ? ? ? ? 97.800 ? 15 5.300 5.930 1496 ? 270 0.028 49.450 ? ? ? ? ? 95.700 ? 16 5.930 6.840 1361 ? 252 0.025 53.160 ? ? ? ? ? 96.900 ? 17 6.840 8.380 1202 ? 214 0.017 64.970 ? ? ? ? ? 94.700 ? 18 8.380 11.850 925 ? 169 0.013 76.090 ? ? ? ? ? 93.400 ? 19 11.850 ? 495 ? 102 0.011 75.200 ? ? ? ? ? 85.000 ? 20 # _refine.entry_id 3R9L _refine.ls_d_res_high 2.6500 _refine.ls_d_res_low 39.4 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.2600 _refine.ls_number_reflns_obs 7619 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2359 _refine.ls_R_factor_R_work 0.2344 _refine.ls_wR_factor_R_work 0.2196 _refine.ls_R_factor_R_free 0.2663 _refine.ls_wR_factor_R_free 0.2439 _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_number_reflns_R_free 348 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 78.7938 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.3300 _refine.aniso_B[2][2] 1.3300 _refine.aniso_B[3][3] -2.0000 _refine.aniso_B[1][2] 0.6700 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9250 _refine.correlation_coeff_Fo_to_Fc_free 0.9070 _refine.overall_SU_R_Cruickshank_DPI 0.2899 _refine.overall_SU_R_free 0.2432 _refine.pdbx_overall_ESU_R_Free 0.2430 _refine.overall_SU_ML 0.1720 _refine.overall_SU_B 18.0060 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1NPK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8203 _refine.B_iso_max 167.800 _refine.B_iso_min 9.450 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 813 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 827 _refine_hist.d_res_high 2.6500 _refine_hist.d_res_low 39.4 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 827 0.012 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1120 1.278 1.948 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 110 6.811 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 32 29.361 22.188 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 123 14.313 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 28.396 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 128 0.083 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 628 0.007 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 551 0.854 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 871 1.571 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 276 1.539 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 249 2.695 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.6500 _refine_ls_shell.d_res_low 2.7190 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.4700 _refine_ls_shell.number_reflns_R_work 540 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3240 _refine_ls_shell.R_factor_R_free 0.3620 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 562 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3R9L _struct.title 'Crystal structure of nucleoside diphosphate kinase from Giardia lamblia featuring a disordered dinucleotide binding site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R9L _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, giardiasis, intestinal disease, protozoan parasite, water contaminant, kinase, phosphoryltransfer, ADP, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? ARG A 21 ? LYS A 11 ARG A 17 1 ? 7 HELX_P HELX_P2 2 LEU A 23 ? GLY A 35 ? LEU A 19 GLY A 31 1 ? 13 HELX_P HELX_P3 3 ASN A 85 ? GLY A 95 ? ASN A 81 GLY A 91 1 ? 11 HELX_P HELX_P4 4 THR A 106 ? GLY A 112 ? THR A 102 GLY A 108 1 ? 7 HELX_P HELX_P5 5 ASN A 125 ? PHE A 137 ? ASN A 121 PHE A 133 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 37 ? LYS A 42 ? LYS A 33 LYS A 38 A 2 CYS A 77 ? GLU A 82 ? CYS A 73 GLU A 78 A 3 ARG A 9 ? VAL A 14 ? ARG A 5 VAL A 10 A 4 ILE A 120 ? GLY A 122 ? ILE A 116 GLY A 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 39 ? N VAL A 35 O VAL A 80 ? O VAL A 76 A 2 3 O MET A 79 ? O MET A 75 N LEU A 12 ? N LEU A 8 A 3 4 N MET A 13 ? N MET A 9 O HIS A 121 ? O HIS A 117 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 152 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 152' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 LYS A 15 ? LYS A 11 . ? 1_555 ? 2 AC1 2 HIS A 121 ? HIS A 117 . ? 1_555 ? # _atom_sites.entry_id 3R9L _atom_sites.fract_transf_matrix[1][1] 0.008550 _atom_sites.fract_transf_matrix[1][2] 0.004936 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009873 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015952 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 ? ? ? A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 ALA 6 2 2 ALA ALA A . n A 1 7 ARG 7 3 3 ARG ARG A . n A 1 8 GLU 8 4 4 GLU GLU A . n A 1 9 ARG 9 5 5 ARG ARG A . n A 1 10 THR 10 6 6 THR THR A . n A 1 11 PHE 11 7 7 PHE PHE A . n A 1 12 LEU 12 8 8 LEU LEU A . n A 1 13 MET 13 9 9 MET MET A . n A 1 14 VAL 14 10 10 VAL VAL A . n A 1 15 LYS 15 11 11 LYS LYS A . n A 1 16 PRO 16 12 12 PRO PRO A . n A 1 17 ASP 17 13 13 ASP ASP A . n A 1 18 GLY 18 14 14 GLY GLY A . n A 1 19 VAL 19 15 15 VAL VAL A . n A 1 20 GLN 20 16 16 GLN GLN A . n A 1 21 ARG 21 17 17 ARG ARG A . n A 1 22 GLY 22 18 18 GLY GLY A . n A 1 23 LEU 23 19 19 LEU LEU A . n A 1 24 VAL 24 20 20 VAL VAL A . n A 1 25 GLY 25 21 21 GLY GLY A . n A 1 26 GLU 26 22 22 GLU GLU A . n A 1 27 ILE 27 23 23 ILE ILE A . n A 1 28 ILE 28 24 24 ILE ILE A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 PHE 31 27 27 PHE PHE A . n A 1 32 GLU 32 28 28 GLU GLU A . n A 1 33 ARG 33 29 29 ARG ARG A . n A 1 34 ARG 34 30 30 ARG ARG A . n A 1 35 GLY 35 31 31 GLY GLY A . n A 1 36 PHE 36 32 32 PHE PHE A . n A 1 37 LYS 37 33 33 LYS LYS A . n A 1 38 LEU 38 34 34 LEU LEU A . n A 1 39 VAL 39 35 35 VAL VAL A . n A 1 40 ALA 40 36 36 ALA ALA A . n A 1 41 MET 41 37 37 MET MET A . n A 1 42 LYS 42 38 38 LYS LYS A . n A 1 43 PHE 43 39 39 PHE PHE A . n A 1 44 PHE 44 40 40 PHE PHE A . n A 1 45 VAL 45 41 ? ? ? A . n A 1 46 PRO 46 42 ? ? ? A . n A 1 47 SER 47 43 ? ? ? A . n A 1 48 LYS 48 44 ? ? ? A . n A 1 49 ASN 49 45 ? ? ? A . n A 1 50 LEU 50 46 ? ? ? A . n A 1 51 VAL 51 47 ? ? ? A . n A 1 52 GLU 52 48 ? ? ? A . n A 1 53 GLU 53 49 ? ? ? A . n A 1 54 HIS 54 50 ? ? ? A . n A 1 55 TYR 55 51 ? ? ? A . n A 1 56 LYS 56 52 ? ? ? A . n A 1 57 GLU 57 53 ? ? ? A . n A 1 58 HIS 58 54 ? ? ? A . n A 1 59 ALA 59 55 ? ? ? A . n A 1 60 ALA 60 56 ? ? ? A . n A 1 61 ARG 61 57 ? ? ? A . n A 1 62 PRO 62 58 ? ? ? A . n A 1 63 PHE 63 59 ? ? ? A . n A 1 64 PHE 64 60 ? ? ? A . n A 1 65 ALA 65 61 ? ? ? A . n A 1 66 GLY 66 62 ? ? ? A . n A 1 67 LEU 67 63 ? ? ? A . n A 1 68 CYS 68 64 ? ? ? A . n A 1 69 LYS 69 65 ? ? ? A . n A 1 70 PHE 70 66 ? ? ? A . n A 1 71 LEU 71 67 ? ? ? A . n A 1 72 SER 72 68 68 SER SER A . n A 1 73 SER 73 69 69 SER SER A . n A 1 74 GLY 74 70 70 GLY GLY A . n A 1 75 PRO 75 71 71 PRO PRO A . n A 1 76 VAL 76 72 72 VAL VAL A . n A 1 77 CYS 77 73 73 CYS CYS A . n A 1 78 ALA 78 74 74 ALA ALA A . n A 1 79 MET 79 75 75 MET MET A . n A 1 80 VAL 80 76 76 VAL VAL A . n A 1 81 TRP 81 77 77 TRP TRP A . n A 1 82 GLU 82 78 78 GLU GLU A . n A 1 83 GLY 83 79 79 GLY GLY A . n A 1 84 ALA 84 80 80 ALA ALA A . n A 1 85 ASN 85 81 81 ASN ASN A . n A 1 86 VAL 86 82 82 VAL VAL A . n A 1 87 VAL 87 83 83 VAL VAL A . n A 1 88 SER 88 84 84 SER SER A . n A 1 89 ILE 89 85 85 ILE ILE A . n A 1 90 SER 90 86 86 SER SER A . n A 1 91 ARG 91 87 87 ARG ARG A . n A 1 92 THR 92 88 88 THR THR A . n A 1 93 MET 93 89 89 MET MET A . n A 1 94 MET 94 90 90 MET MET A . n A 1 95 GLY 95 91 91 GLY GLY A . n A 1 96 VAL 96 92 92 VAL VAL A . n A 1 97 THR 97 93 93 THR THR A . n A 1 98 LYS 98 94 94 LYS LYS A . n A 1 99 PRO 99 95 95 PRO PRO A . n A 1 100 ALA 100 96 96 ALA ALA A . n A 1 101 GLU 101 97 97 GLU GLU A . n A 1 102 SER 102 98 98 SER SER A . n A 1 103 ALA 103 99 99 ALA ALA A . n A 1 104 PRO 104 100 100 PRO PRO A . n A 1 105 GLY 105 101 101 GLY GLY A . n A 1 106 THR 106 102 102 THR THR A . n A 1 107 ILE 107 103 103 ILE ILE A . n A 1 108 ARG 108 104 104 ARG ARG A . n A 1 109 GLY 109 105 105 GLY GLY A . n A 1 110 ASP 110 106 106 ASP ASP A . n A 1 111 PHE 111 107 107 PHE PHE A . n A 1 112 GLY 112 108 108 GLY GLY A . n A 1 113 ILE 113 109 109 ILE ILE A . n A 1 114 ASP 114 110 110 ASP ASP A . n A 1 115 VAL 115 111 111 VAL VAL A . n A 1 116 GLY 116 112 112 GLY GLY A . n A 1 117 ARG 117 113 113 ARG ARG A . n A 1 118 ASN 118 114 114 ASN ASN A . n A 1 119 ILE 119 115 115 ILE ILE A . n A 1 120 ILE 120 116 116 ILE ILE A . n A 1 121 HIS 121 117 117 HIS HIS A . n A 1 122 GLY 122 118 118 GLY GLY A . n A 1 123 SER 123 119 119 SER SER A . n A 1 124 ALA 124 120 120 ALA ALA A . n A 1 125 ASN 125 121 121 ASN ASN A . n A 1 126 LEU 126 122 122 LEU LEU A . n A 1 127 ASP 127 123 123 ASP ASP A . n A 1 128 ASP 128 124 124 ASP ASP A . n A 1 129 ALA 129 125 125 ALA ALA A . n A 1 130 ALA 130 126 126 ALA ALA A . n A 1 131 ARG 131 127 127 ARG ARG A . n A 1 132 GLU 132 128 128 GLU GLU A . n A 1 133 ILE 133 129 129 ILE ILE A . n A 1 134 ALA 134 130 130 ALA ALA A . n A 1 135 LEU 135 131 131 LEU LEU A . n A 1 136 TRP 136 132 132 TRP TRP A . n A 1 137 PHE 137 133 133 PHE PHE A . n A 1 138 LYS 138 134 134 LYS LYS A . n A 1 139 PRO 139 135 135 PRO PRO A . n A 1 140 GLU 140 136 136 GLU GLU A . n A 1 141 GLU 141 137 137 GLU GLU A . n A 1 142 VAL 142 138 138 VAL VAL A . n A 1 143 ALA 143 139 139 ALA ALA A . n A 1 144 SER 144 140 ? ? ? A . n A 1 145 TRP 145 141 ? ? ? A . n A 1 146 SER 146 142 ? ? ? A . n A 1 147 CYS 147 143 ? ? ? A . n A 1 148 SER 148 144 ? ? ? A . n A 1 149 LEU 149 145 ? ? ? A . n A 1 150 GLU 150 146 ? ? ? A . n A 1 151 SER 151 147 ? ? ? A . n A 1 152 HIS 152 148 ? ? ? A . n A 1 153 ILE 153 149 ? ? ? A . n A 1 154 TYR 154 150 ? ? ? A . n A 1 155 GLU 155 151 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 152 1 CL CL A . C 3 HOH 1 153 1 HOH HOH A . C 3 HOH 2 154 2 HOH HOH A . C 3 HOH 3 155 3 HOH HOH A . C 3 HOH 4 156 4 HOH HOH A . C 3 HOH 5 157 5 HOH HOH A . C 3 HOH 6 158 6 HOH HOH A . C 3 HOH 7 159 7 HOH HOH A . C 3 HOH 8 160 8 HOH HOH A . C 3 HOH 9 161 9 HOH HOH A . C 3 HOH 10 162 10 HOH HOH A . C 3 HOH 11 163 11 HOH HOH A . C 3 HOH 12 164 12 HOH HOH A . C 3 HOH 13 165 13 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8950 ? 1 MORE -83 ? 1 'SSA (A^2)' 26860 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5000000000 -0.8660254038 0.0000000000 58.4800000000 0.8660254038 -0.5000000000 0.0000000000 -101.2903312266 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5000000000 0.8660254038 0.0000000000 116.9600000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_554 -y,-x,-z-1/2 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -31.3450000000 5 'crystal symmetry operation' 11_654 -x+y+1,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 116.9600000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -31.3450000000 6 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/2 0.5000000000 0.8660254038 0.0000000000 58.4800000000 0.8660254038 -0.5000000000 0.0000000000 -101.2903312266 0.0000000000 0.0000000000 -1.0000000000 -31.3450000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 42.5508 -49.7868 -2.2016 0.5665 0.5012 0.2762 -0.4438 -0.0605 0.1955 -0.1892 -1.4193 9.5645 -0.4509 1.4067 -2.7118 -0.6114 -0.1360 0.7474 -0.1349 0.2306 -0.6238 0.0468 0.7019 -1.2075 'X-RAY DIFFRACTION' 2 ? refined 45.5237 -39.3486 -5.7882 0.0732 0.1726 0.1190 -0.0754 0.0094 -0.0043 1.0021 0.3253 2.2016 0.5558 0.2785 -0.1792 -0.0100 -0.0741 0.0841 -0.1077 0.0531 -0.0443 0.0330 0.0587 -0.3640 'X-RAY DIFFRACTION' 3 ? refined 41.3597 -35.2567 -0.3983 0.1763 0.3647 0.3097 -0.0342 0.0610 -0.0835 1.4323 -1.3243 3.0736 -0.4106 -0.4175 2.4604 -0.0248 -0.0239 0.0488 -0.3465 0.5661 0.1407 -0.0106 -0.4427 -0.3767 'X-RAY DIFFRACTION' 4 ? refined 33.6002 -50.3939 -4.5500 0.3326 0.5238 0.0425 -0.4470 0.1664 0.0013 12.8190 3.8305 -5.6608 11.8183 4.8362 0.2214 1.0619 -1.0113 -0.0507 -0.8141 0.5512 0.6065 0.5450 0.7726 -0.3410 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 9 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 10 A 106 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 107 A 123 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 124 A 139 ? . . . . ? # _pdbx_phasing_MR.entry_id 3R9L _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 48.980 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.680 _pdbx_phasing_MR.d_res_low_rotation 42.070 _pdbx_phasing_MR.d_res_high_translation 2.680 _pdbx_phasing_MR.d_res_low_translation 42.070 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.1.4 'Thu Nov 13 10:53:32 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 BOS . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 95 ? ? -45.69 -14.26 2 1 ILE A 109 ? ? -98.32 -98.00 3 1 ILE A 115 ? ? 76.20 -44.60 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CG ? A MET 5 CG 2 1 Y 1 A MET 1 ? SD ? A MET 5 SD 3 1 Y 1 A MET 1 ? CE ? A MET 5 CE 4 1 Y 1 A ARG 3 ? CG ? A ARG 7 CG 5 1 Y 1 A ARG 3 ? CD ? A ARG 7 CD 6 1 Y 1 A ARG 3 ? NE ? A ARG 7 NE 7 1 Y 1 A ARG 3 ? CZ ? A ARG 7 CZ 8 1 Y 1 A ARG 3 ? NH1 ? A ARG 7 NH1 9 1 Y 1 A ARG 3 ? NH2 ? A ARG 7 NH2 10 1 Y 1 A GLN 16 ? CG ? A GLN 20 CG 11 1 Y 1 A GLN 16 ? CD ? A GLN 20 CD 12 1 Y 1 A GLN 16 ? OE1 ? A GLN 20 OE1 13 1 Y 1 A GLN 16 ? NE2 ? A GLN 20 NE2 14 1 Y 1 A LYS 33 ? CG ? A LYS 37 CG 15 1 Y 1 A LYS 33 ? CD ? A LYS 37 CD 16 1 Y 1 A LYS 33 ? CE ? A LYS 37 CE 17 1 Y 1 A LYS 33 ? NZ ? A LYS 37 NZ 18 1 Y 1 A LYS 38 ? CG ? A LYS 42 CG 19 1 Y 1 A LYS 38 ? CD ? A LYS 42 CD 20 1 Y 1 A LYS 38 ? CE ? A LYS 42 CE 21 1 Y 1 A LYS 38 ? NZ ? A LYS 42 NZ 22 1 Y 1 A PHE 40 ? CG ? A PHE 44 CG 23 1 Y 1 A PHE 40 ? CD1 ? A PHE 44 CD1 24 1 Y 1 A PHE 40 ? CD2 ? A PHE 44 CD2 25 1 Y 1 A PHE 40 ? CE1 ? A PHE 44 CE1 26 1 Y 1 A PHE 40 ? CE2 ? A PHE 44 CE2 27 1 Y 1 A PHE 40 ? CZ ? A PHE 44 CZ 28 1 Y 1 A LYS 94 ? CG ? A LYS 98 CG 29 1 Y 1 A LYS 94 ? CD ? A LYS 98 CD 30 1 Y 1 A LYS 94 ? CE ? A LYS 98 CE 31 1 Y 1 A LYS 94 ? NZ ? A LYS 98 NZ 32 1 Y 1 A ARG 127 ? CG ? A ARG 131 CG 33 1 Y 1 A ARG 127 ? CD ? A ARG 131 CD 34 1 Y 1 A ARG 127 ? NE ? A ARG 131 NE 35 1 Y 1 A ARG 127 ? CZ ? A ARG 131 CZ 36 1 Y 1 A ARG 127 ? NH1 ? A ARG 131 NH1 37 1 Y 1 A ARG 127 ? NH2 ? A ARG 131 NH2 38 1 Y 1 A LYS 134 ? CG ? A LYS 138 CG 39 1 Y 1 A LYS 134 ? CD ? A LYS 138 CD 40 1 Y 1 A LYS 134 ? CE ? A LYS 138 CE 41 1 Y 1 A LYS 134 ? NZ ? A LYS 138 NZ 42 1 Y 1 A GLU 136 ? CG ? A GLU 140 CG 43 1 Y 1 A GLU 136 ? CD ? A GLU 140 CD 44 1 Y 1 A GLU 136 ? OE1 ? A GLU 140 OE1 45 1 Y 1 A GLU 136 ? OE2 ? A GLU 140 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLY -1 ? A GLY 3 4 1 Y 1 A SER 0 ? A SER 4 5 1 Y 1 A VAL 41 ? A VAL 45 6 1 Y 1 A PRO 42 ? A PRO 46 7 1 Y 1 A SER 43 ? A SER 47 8 1 Y 1 A LYS 44 ? A LYS 48 9 1 Y 1 A ASN 45 ? A ASN 49 10 1 Y 1 A LEU 46 ? A LEU 50 11 1 Y 1 A VAL 47 ? A VAL 51 12 1 Y 1 A GLU 48 ? A GLU 52 13 1 Y 1 A GLU 49 ? A GLU 53 14 1 Y 1 A HIS 50 ? A HIS 54 15 1 Y 1 A TYR 51 ? A TYR 55 16 1 Y 1 A LYS 52 ? A LYS 56 17 1 Y 1 A GLU 53 ? A GLU 57 18 1 Y 1 A HIS 54 ? A HIS 58 19 1 Y 1 A ALA 55 ? A ALA 59 20 1 Y 1 A ALA 56 ? A ALA 60 21 1 Y 1 A ARG 57 ? A ARG 61 22 1 Y 1 A PRO 58 ? A PRO 62 23 1 Y 1 A PHE 59 ? A PHE 63 24 1 Y 1 A PHE 60 ? A PHE 64 25 1 Y 1 A ALA 61 ? A ALA 65 26 1 Y 1 A GLY 62 ? A GLY 66 27 1 Y 1 A LEU 63 ? A LEU 67 28 1 Y 1 A CYS 64 ? A CYS 68 29 1 Y 1 A LYS 65 ? A LYS 69 30 1 Y 1 A PHE 66 ? A PHE 70 31 1 Y 1 A LEU 67 ? A LEU 71 32 1 Y 1 A SER 140 ? A SER 144 33 1 Y 1 A TRP 141 ? A TRP 145 34 1 Y 1 A SER 142 ? A SER 146 35 1 Y 1 A CYS 143 ? A CYS 147 36 1 Y 1 A SER 144 ? A SER 148 37 1 Y 1 A LEU 145 ? A LEU 149 38 1 Y 1 A GLU 146 ? A GLU 150 39 1 Y 1 A SER 147 ? A SER 151 40 1 Y 1 A HIS 148 ? A HIS 152 41 1 Y 1 A ILE 149 ? A ILE 153 42 1 Y 1 A TYR 150 ? A TYR 154 43 1 Y 1 A GLU 151 ? A GLU 155 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NPK _pdbx_initial_refinement_model.details 'PDB ENTRY 1NPK' #