HEADER TRANSFERASE 25-MAR-11 3R9P TITLE CRYSTAL STRUCTURE OF ACKA FROM MYCOBACTERIUM PARATUBERCULOSIS ATCC TITLE 2 BAA-968 / K-10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACKA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1770; SOURCE 4 STRAIN: ATCC BAA-968 / K-10; SOURCE 5 GENE: ACKA, MAP_3886; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 ACETATE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 21-FEB-24 3R9P 1 REMARK SEQADV REVDAT 4 08-NOV-17 3R9P 1 REMARK REVDAT 3 15-APR-15 3R9P 1 JRNL REVDAT 2 11-MAR-15 3R9P 1 JRNL VERSN REVDAT 1 04-MAY-11 3R9P 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 65029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4658 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 249 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 583 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.785 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5799 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3866 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7883 ; 1.209 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9369 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 774 ; 5.776 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;33.172 ;22.450 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 882 ;13.515 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;16.435 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 911 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6646 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1219 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3771 ; 0.623 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1573 ; 0.135 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6010 ; 1.142 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2028 ; 1.773 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1864 ; 2.974 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 387 REMARK 3 RESIDUE RANGE : A 388 A 390 REMARK 3 RESIDUE RANGE : A 391 A 1492 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2704 -1.6858 -23.1605 REMARK 3 T TENSOR REMARK 3 T11: 0.0174 T22: 0.0463 REMARK 3 T33: 0.0166 T12: -0.0234 REMARK 3 T13: -0.0041 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.1249 L22: 0.2664 REMARK 3 L33: 0.6126 L12: 0.0987 REMARK 3 L13: -0.2132 L23: -0.1190 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0405 S13: 0.0186 REMARK 3 S21: 0.0028 S22: 0.0168 S23: 0.0369 REMARK 3 S31: 0.0631 S32: -0.1302 S33: -0.0150 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 387 REMARK 3 RESIDUE RANGE : B 388 B 388 REMARK 3 RESIDUE RANGE : B 389 B 1491 REMARK 3 ORIGIN FOR THE GROUP (A): 51.5233 -18.2627 -17.9577 REMARK 3 T TENSOR REMARK 3 T11: 0.0113 T22: 0.0148 REMARK 3 T33: 0.0191 T12: 0.0004 REMARK 3 T13: -0.0078 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.2138 L22: 0.5463 REMARK 3 L33: 0.1571 L12: 0.0140 REMARK 3 L13: 0.1083 L23: 0.0399 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.0294 S13: 0.0293 REMARK 3 S21: 0.0021 S22: 0.0373 S23: -0.0315 REMARK 3 S31: -0.0323 S32: -0.0019 S33: 0.0016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3R9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMERTIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68749 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MIB BUFFER, 25% PEG 1500, CRYO 25% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K, REMARK 280 PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.62700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.93550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.75350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.93550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.62700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.75350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.25400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 49.75350 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -51.93550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 44 REMARK 465 SER B 45 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 67 CG1 CG2 REMARK 470 LEU A 69 CG CD1 CD2 REMARK 470 THR A 71 OG1 CG2 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 8 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 ASP B 68 CG OD1 OD2 REMARK 470 ASN B 70 CG OD1 ND2 REMARK 470 THR B 71 OG1 CG2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 111 CG CD1 CD2 REMARK 470 ARG B 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 ARG B 270 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 277 CG CD OE1 OE2 REMARK 470 ARG B 383 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 261 -160.47 -127.52 REMARK 500 ASP A 271 -123.54 170.92 REMARK 500 PHE A 272 -38.83 160.07 REMARK 500 ALA A 318 -178.42 71.45 REMARK 500 ASP B 143 30.51 -99.23 REMARK 500 SER B 261 -161.17 -126.13 REMARK 500 ALA B 318 -179.28 76.18 REMARK 500 ASN B 372 80.96 -150.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 388 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYPAA.00640.A RELATED DB: TARGETDB DBREF 3R9P A 1 387 UNP Q73T33 Q73T33_MYCPA 1 387 DBREF 3R9P B 1 387 UNP Q73T33 Q73T33_MYCPA 1 387 SEQADV 3R9P GLY A -3 UNP Q73T33 EXPRESSION TAG SEQADV 3R9P PRO A -2 UNP Q73T33 EXPRESSION TAG SEQADV 3R9P GLY A -1 UNP Q73T33 EXPRESSION TAG SEQADV 3R9P SER A 0 UNP Q73T33 EXPRESSION TAG SEQADV 3R9P GLY B -3 UNP Q73T33 EXPRESSION TAG SEQADV 3R9P PRO B -2 UNP Q73T33 EXPRESSION TAG SEQADV 3R9P GLY B -1 UNP Q73T33 EXPRESSION TAG SEQADV 3R9P SER B 0 UNP Q73T33 EXPRESSION TAG SEQRES 1 A 391 GLY PRO GLY SER MET ASP GLY SER ASP GLY ALA ARG ARG SEQRES 2 A 391 VAL LEU VAL ILE ASN SER GLY SER SER SER LEU LYS PHE SEQRES 3 A 391 GLN LEU VAL ASP PRO GLU PHE GLY VAL ALA ALA SER THR SEQRES 4 A 391 GLY ILE VAL GLU ARG ILE GLY GLU GLU SER SER PRO VAL SEQRES 5 A 391 PRO ASP HIS ASP ALA ALA LEU ARG ARG ALA PHE ASP MET SEQRES 6 A 391 LEU ALA GLY ASP GLY VAL ASP LEU ASN THR ALA GLY LEU SEQRES 7 A 391 VAL ALA VAL GLY HIS ARG VAL VAL HIS GLY GLY ASN THR SEQRES 8 A 391 PHE TYR ARG PRO THR VAL LEU ASP ASP ALA VAL ILE ALA SEQRES 9 A 391 ARG LEU HIS GLU LEU SER GLU LEU ALA PRO LEU HIS ASN SEQRES 10 A 391 PRO PRO ALA LEU GLN GLY ILE GLU VAL ALA ARG ARG LEU SEQRES 11 A 391 LEU PRO ASP ILE ALA HIS VAL ALA VAL PHE ASP THR GLY SEQRES 12 A 391 PHE PHE HIS ASP LEU PRO PRO ALA ALA ALA THR TYR ALA SEQRES 13 A 391 ILE ASP ARG GLU LEU ALA ASP ARG TRP GLN ILE ARG ARG SEQRES 14 A 391 TYR GLY PHE HIS GLY THR SER HIS ARG TYR VAL SER GLU SEQRES 15 A 391 GLN ALA ALA ALA PHE LEU ASP ARG PRO LEU ARG GLY LEU SEQRES 16 A 391 LYS GLN ILE VAL LEU HIS LEU GLY ASN GLY CYS SER ALA SEQRES 17 A 391 SER ALA ILE ALA GLY THR ARG PRO LEU ASP THR SER MET SEQRES 18 A 391 GLY LEU THR PRO LEU GLU GLY LEU VAL MET GLY THR ARG SEQRES 19 A 391 SER GLY ASP ILE ASP PRO SER ILE VAL SER TYR LEU CYS SEQRES 20 A 391 HIS THR ALA GLY MET GLY VAL ASP ASP VAL GLU SER MET SEQRES 21 A 391 LEU ASN HIS ARG SER GLY VAL VAL GLY LEU SER GLY VAL SEQRES 22 A 391 ARG ASP PHE ARG ARG LEU ARG GLU LEU ILE GLU SER GLY SEQRES 23 A 391 ASP GLY ALA ALA GLN LEU ALA TYR SER VAL PHE THR HIS SEQRES 24 A 391 ARG LEU ARG LYS TYR ILE GLY ALA TYR LEU ALA VAL LEU SEQRES 25 A 391 GLY HIS THR ASP VAL ILE SER PHE THR ALA GLY ILE GLY SEQRES 26 A 391 GLU ASN ASP ALA ALA VAL ARG ARG ASP ALA VAL SER GLY SEQRES 27 A 391 MET GLU GLU LEU GLY ILE VAL LEU ASP GLU ARG ARG ASN SEQRES 28 A 391 LEU ALA GLY GLY LYS GLY ALA ARG GLN ILE SER ALA ASP SEQRES 29 A 391 ASP SER PRO ILE THR VAL LEU VAL VAL PRO THR ASN GLU SEQRES 30 A 391 GLU LEU ALA ILE ALA ARG ASP CYS VAL ARG VAL LEU GLY SEQRES 31 A 391 GLY SEQRES 1 B 391 GLY PRO GLY SER MET ASP GLY SER ASP GLY ALA ARG ARG SEQRES 2 B 391 VAL LEU VAL ILE ASN SER GLY SER SER SER LEU LYS PHE SEQRES 3 B 391 GLN LEU VAL ASP PRO GLU PHE GLY VAL ALA ALA SER THR SEQRES 4 B 391 GLY ILE VAL GLU ARG ILE GLY GLU GLU SER SER PRO VAL SEQRES 5 B 391 PRO ASP HIS ASP ALA ALA LEU ARG ARG ALA PHE ASP MET SEQRES 6 B 391 LEU ALA GLY ASP GLY VAL ASP LEU ASN THR ALA GLY LEU SEQRES 7 B 391 VAL ALA VAL GLY HIS ARG VAL VAL HIS GLY GLY ASN THR SEQRES 8 B 391 PHE TYR ARG PRO THR VAL LEU ASP ASP ALA VAL ILE ALA SEQRES 9 B 391 ARG LEU HIS GLU LEU SER GLU LEU ALA PRO LEU HIS ASN SEQRES 10 B 391 PRO PRO ALA LEU GLN GLY ILE GLU VAL ALA ARG ARG LEU SEQRES 11 B 391 LEU PRO ASP ILE ALA HIS VAL ALA VAL PHE ASP THR GLY SEQRES 12 B 391 PHE PHE HIS ASP LEU PRO PRO ALA ALA ALA THR TYR ALA SEQRES 13 B 391 ILE ASP ARG GLU LEU ALA ASP ARG TRP GLN ILE ARG ARG SEQRES 14 B 391 TYR GLY PHE HIS GLY THR SER HIS ARG TYR VAL SER GLU SEQRES 15 B 391 GLN ALA ALA ALA PHE LEU ASP ARG PRO LEU ARG GLY LEU SEQRES 16 B 391 LYS GLN ILE VAL LEU HIS LEU GLY ASN GLY CYS SER ALA SEQRES 17 B 391 SER ALA ILE ALA GLY THR ARG PRO LEU ASP THR SER MET SEQRES 18 B 391 GLY LEU THR PRO LEU GLU GLY LEU VAL MET GLY THR ARG SEQRES 19 B 391 SER GLY ASP ILE ASP PRO SER ILE VAL SER TYR LEU CYS SEQRES 20 B 391 HIS THR ALA GLY MET GLY VAL ASP ASP VAL GLU SER MET SEQRES 21 B 391 LEU ASN HIS ARG SER GLY VAL VAL GLY LEU SER GLY VAL SEQRES 22 B 391 ARG ASP PHE ARG ARG LEU ARG GLU LEU ILE GLU SER GLY SEQRES 23 B 391 ASP GLY ALA ALA GLN LEU ALA TYR SER VAL PHE THR HIS SEQRES 24 B 391 ARG LEU ARG LYS TYR ILE GLY ALA TYR LEU ALA VAL LEU SEQRES 25 B 391 GLY HIS THR ASP VAL ILE SER PHE THR ALA GLY ILE GLY SEQRES 26 B 391 GLU ASN ASP ALA ALA VAL ARG ARG ASP ALA VAL SER GLY SEQRES 27 B 391 MET GLU GLU LEU GLY ILE VAL LEU ASP GLU ARG ARG ASN SEQRES 28 B 391 LEU ALA GLY GLY LYS GLY ALA ARG GLN ILE SER ALA ASP SEQRES 29 B 391 ASP SER PRO ILE THR VAL LEU VAL VAL PRO THR ASN GLU SEQRES 30 B 391 GLU LEU ALA ILE ALA ARG ASP CYS VAL ARG VAL LEU GLY SEQRES 31 B 391 GLY HET GOL A 388 6 HET EDO A 389 4 HET PGE A 390 10 HET PGE B 388 10 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 EDO C2 H6 O2 FORMUL 5 PGE 2(C6 H14 O4) FORMUL 7 HOH *583(H2 O) HELIX 1 1 ASP A 50 ASP A 65 1 16 HELIX 2 2 ASP A 95 GLU A 104 1 10 HELIX 3 3 LEU A 105 ALA A 109 5 5 HELIX 4 4 HIS A 112 LEU A 127 1 16 HELIX 5 5 THR A 138 HIS A 142 5 5 HELIX 6 6 PRO A 145 THR A 150 1 6 HELIX 7 7 ASP A 154 TRP A 161 1 8 HELIX 8 8 HIS A 169 LEU A 184 1 16 HELIX 9 9 PRO A 187 GLY A 190 5 4 HELIX 10 10 PRO A 236 ALA A 246 1 11 HELIX 11 11 GLY A 249 ARG A 260 1 12 HELIX 12 12 SER A 261 GLY A 268 1 8 HELIX 13 13 PHE A 272 SER A 281 1 10 HELIX 14 14 ASP A 283 GLY A 309 1 27 HELIX 15 15 ALA A 318 ASP A 324 1 7 HELIX 16 16 ASP A 324 SER A 333 1 10 HELIX 17 17 MET A 335 GLY A 339 5 5 HELIX 18 18 ASP A 343 LEU A 348 1 6 HELIX 19 19 ASN A 372 LEU A 385 1 14 HELIX 20 20 ASP B 50 ASP B 65 1 16 HELIX 21 21 ASP B 95 HIS B 103 1 9 HELIX 22 22 GLU B 104 ALA B 109 5 6 HELIX 23 23 HIS B 112 LEU B 127 1 16 HELIX 24 24 THR B 138 HIS B 142 5 5 HELIX 25 25 PRO B 145 THR B 150 1 6 HELIX 26 26 ASP B 154 GLN B 162 1 9 HELIX 27 27 HIS B 169 ASP B 185 1 17 HELIX 28 28 PRO B 187 GLY B 190 5 4 HELIX 29 29 PRO B 236 ALA B 246 1 11 HELIX 30 30 GLY B 249 ARG B 260 1 12 HELIX 31 31 SER B 261 GLY B 268 1 8 HELIX 32 32 ASP B 271 ARG B 273 5 3 HELIX 33 33 ARG B 274 SER B 281 1 8 HELIX 34 34 ASP B 283 GLY B 309 1 27 HELIX 35 35 ALA B 318 GLU B 322 1 5 HELIX 36 36 ASP B 324 SER B 333 1 10 HELIX 37 37 MET B 335 GLY B 339 5 5 HELIX 38 38 ASP B 343 ALA B 349 1 7 HELIX 39 39 ASN B 372 LEU B 385 1 14 SHEET 1 A 6 VAL A 31 VAL A 38 0 SHEET 2 A 6 LEU A 20 ASP A 26 -1 N ASP A 26 O VAL A 31 SHEET 3 A 6 ARG A 9 SER A 15 -1 N VAL A 12 O GLN A 23 SHEET 4 A 6 LEU A 74 VAL A 81 1 O GLY A 78 N ILE A 13 SHEET 5 A 6 ALA A 131 PHE A 136 1 O VAL A 133 N HIS A 79 SHEET 6 A 6 THR A 92 VAL A 93 -1 N THR A 92 O ALA A 134 SHEET 1 B 6 ARG A 211 THR A 215 0 SHEET 2 B 6 CYS A 202 ALA A 208 -1 N ALA A 208 O ARG A 211 SHEET 3 B 6 LYS A 192 LEU A 198 -1 N HIS A 197 O SER A 203 SHEET 4 B 6 VAL A 313 THR A 317 1 O SER A 315 N LEU A 196 SHEET 5 B 6 THR A 365 VAL A 368 1 O LEU A 367 N ILE A 314 SHEET 6 B 6 ARG A 355 GLN A 356 -1 N ARG A 355 O VAL A 368 SHEET 1 C 6 ALA B 32 VAL B 38 0 SHEET 2 C 6 LEU B 20 VAL B 25 -1 N LEU B 24 O SER B 34 SHEET 3 C 6 ARG B 9 SER B 15 -1 N VAL B 12 O GLN B 23 SHEET 4 C 6 LEU B 74 VAL B 81 1 O GLY B 78 N ILE B 13 SHEET 5 C 6 ALA B 131 PHE B 136 1 O VAL B 133 N HIS B 79 SHEET 6 C 6 THR B 92 VAL B 93 -1 N THR B 92 O ALA B 134 SHEET 1 D 6 ARG B 211 THR B 215 0 SHEET 2 D 6 CYS B 202 ALA B 208 -1 N ALA B 206 O LEU B 213 SHEET 3 D 6 LYS B 192 LEU B 198 -1 N GLN B 193 O ILE B 207 SHEET 4 D 6 VAL B 313 THR B 317 1 O SER B 315 N LEU B 196 SHEET 5 D 6 THR B 365 VAL B 368 1 O LEU B 367 N ILE B 314 SHEET 6 D 6 ARG B 355 GLN B 356 -1 N ARG B 355 O VAL B 368 SITE 1 AC1 9 ASN A 323 ALA A 325 LEU A 348 ALA A 349 SITE 2 AC1 9 HOH A 405 HOH A 433 HOH A 480 HOH A 631 SITE 3 AC1 9 HOH A1358 SITE 1 AC2 2 HOH A1373 LYS B 299 SITE 1 AC3 7 HIS A 169 HIS A 197 GLY A 201 MET A 217 SITE 2 AC3 7 ARG A 230 HOH A 494 HOH A 520 SITE 1 AC4 9 HIS B 169 HIS B 197 GLY B 199 ASN B 200 SITE 2 AC4 9 GLY B 201 MET B 217 PRO B 221 ARG B 230 SITE 3 AC4 9 HOH B 460 CRYST1 83.254 99.507 103.871 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009627 0.00000