HEADER LYASE,ISOMERASE 25-MAR-11 3R9Q TITLE STRUCTURE OF A PROBABLE ENOYL-COA HYDRATASE/ISOMERASE FROM TITLE 2 MYCOBACTERIUM ABSCESSUS ATCC 19977 / DSM 44196 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE/ISOMERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 4.2.1.17, 5.3.3.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 561007; SOURCE 4 STRAIN: ATCC 19977 / DSM 44196; SOURCE 5 GENE: MAB_3857C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 ENOYL-COA HYDRATASE/ISOMERASE, LYASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3R9Q 1 REMARK SEQADV REVDAT 3 08-NOV-17 3R9Q 1 REMARK REVDAT 2 22-APR-15 3R9Q 1 JRNL VERSN REVDAT 1 13-APR-11 3R9Q 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 58337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2964 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3829 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5241 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 721 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.990 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5378 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3579 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7336 ; 1.482 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8687 ; 0.956 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 722 ; 5.315 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;38.031 ;23.117 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 798 ;14.023 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;21.411 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 839 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6205 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1086 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3556 ; 0.630 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1463 ; 0.136 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5646 ; 1.193 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1822 ; 2.101 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1685 ; 3.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7055 52.0535 -7.7808 REMARK 3 T TENSOR REMARK 3 T11: 0.0082 T22: 0.0102 REMARK 3 T33: 0.0379 T12: -0.0009 REMARK 3 T13: 0.0098 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.2000 L22: 0.4614 REMARK 3 L33: 0.2173 L12: -0.0946 REMARK 3 L13: -0.0279 L23: -0.2555 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: -0.0011 S13: 0.0209 REMARK 3 S21: 0.0400 S22: 0.0341 S23: 0.0684 REMARK 3 S31: -0.0393 S32: -0.0071 S33: -0.0418 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3150 26.9383 3.6172 REMARK 3 T TENSOR REMARK 3 T11: 0.0068 T22: 0.0166 REMARK 3 T33: 0.0121 T12: 0.0007 REMARK 3 T13: 0.0016 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.3909 L22: 0.2038 REMARK 3 L33: 0.3412 L12: -0.0239 REMARK 3 L13: -0.1560 L23: -0.0356 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: -0.0637 S13: -0.0301 REMARK 3 S21: 0.0248 S22: 0.0037 S23: 0.0152 REMARK 3 S31: 0.0091 S32: 0.0158 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 247 REMARK 3 ORIGIN FOR THE GROUP (A): 52.7409 41.7850 -23.7535 REMARK 3 T TENSOR REMARK 3 T11: 0.0127 T22: 0.0144 REMARK 3 T33: 0.0067 T12: -0.0031 REMARK 3 T13: 0.0069 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.2511 L22: 0.4225 REMARK 3 L33: 0.2143 L12: -0.0727 REMARK 3 L13: -0.0169 L23: -0.0764 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: 0.0281 S13: -0.0007 REMARK 3 S21: -0.0474 S22: -0.0122 S23: -0.0350 REMARK 3 S31: 0.0040 S32: 0.0185 S33: -0.0048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3R9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58642 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3QKA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CHLORIDE, 20% PEG6000, REMARK 280 0.1 M HEPES, PH 7.0, CRYOPROTECTANT: 25% ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.15900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.97550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.10650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.97550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.15900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.10650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 MET A 5 REMARK 465 GLU A 239 REMARK 465 ALA A 240 REMARK 465 LEU A 241 REMARK 465 GLU A 242 REMARK 465 GLY A 243 REMARK 465 ALA A 244 REMARK 465 GLY A 245 REMARK 465 ARG A 246 REMARK 465 PHE A 247 REMARK 465 ALA A 248 REMARK 465 ALA A 249 REMARK 465 GLY A 250 REMARK 465 GLU A 251 REMARK 465 GLY A 252 REMARK 465 ARG A 253 REMARK 465 HIS A 254 REMARK 465 GLY A 255 REMARK 465 ALA A 256 REMARK 465 GLY A 257 REMARK 465 VAL A 258 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 MET B 5 REMARK 465 ARG B 246 REMARK 465 PHE B 247 REMARK 465 ALA B 248 REMARK 465 ALA B 249 REMARK 465 GLY B 250 REMARK 465 GLU B 251 REMARK 465 GLY B 252 REMARK 465 ARG B 253 REMARK 465 HIS B 254 REMARK 465 GLY B 255 REMARK 465 ALA B 256 REMARK 465 GLY B 257 REMARK 465 VAL B 258 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLU C 3 REMARK 465 GLU C 4 REMARK 465 MET C 5 REMARK 465 ALA C 248 REMARK 465 ALA C 249 REMARK 465 GLY C 250 REMARK 465 GLU C 251 REMARK 465 GLY C 252 REMARK 465 ARG C 253 REMARK 465 HIS C 254 REMARK 465 GLY C 255 REMARK 465 ALA C 256 REMARK 465 GLY C 257 REMARK 465 VAL C 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CG CD OE1 NE2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 THR A 238 OG1 CG2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 234 CG CD OE1 OE2 REMARK 470 ARG C 246 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 157 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 189 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 189 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 MET C 159 CG - SD - CE ANGL. DEV. = -25.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 64 -71.33 -86.56 REMARK 500 CYS A 65 123.89 -170.13 REMARK 500 ALA A 110 -130.66 54.00 REMARK 500 PHE B 64 -73.16 -87.09 REMARK 500 ALA B 110 -129.55 56.15 REMARK 500 PHE C 64 -74.71 -85.63 REMARK 500 ALA C 110 -128.96 56.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 260 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYABA.00386.A RELATED DB: TARGETDB DBREF 3R9Q A 1 258 UNP B1MGI6 B1MGI6_MYCA9 1 258 DBREF 3R9Q B 1 258 UNP B1MGI6 B1MGI6_MYCA9 1 258 DBREF 3R9Q C 1 258 UNP B1MGI6 B1MGI6_MYCA9 1 258 SEQADV 3R9Q GLY A -3 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q PRO A -2 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q GLY A -1 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q SER A 0 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q GLY B -3 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q PRO B -2 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q GLY B -1 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q SER B 0 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q GLY C -3 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q PRO C -2 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q GLY C -1 UNP B1MGI6 EXPRESSION TAG SEQADV 3R9Q SER C 0 UNP B1MGI6 EXPRESSION TAG SEQRES 1 A 262 GLY PRO GLY SER MET SER GLU GLU MET GLN PRO ALA VAL SEQRES 2 A 262 ARG VAL GLU LYS ALA GLY PRO VAL THR THR VAL ILE LEU SEQRES 3 A 262 ASN ARG PRO HIS ALA ARG ASN ALA VAL ASP GLY PRO THR SEQRES 4 A 262 ALA ALA ALA LEU LEU ALA ALA PHE THR GLU PHE ASP ALA SEQRES 5 A 262 ASP PRO GLU ALA SER VAL ALA VAL LEU TRP GLY ASP ASN SEQRES 6 A 262 GLY THR PHE CYS ALA GLY ALA ASP LEU LYS ALA MET GLY SEQRES 7 A 262 THR ASP ARG GLY ASN GLU LEU HIS PRO HIS GLY PRO GLY SEQRES 8 A 262 PRO MET GLY PRO SER ARG LEU ARG LEU SER LYS PRO VAL SEQRES 9 A 262 ILE ALA ALA ILE SER GLY HIS ALA VAL ALA GLY GLY ILE SEQRES 10 A 262 GLU LEU ALA LEU TRP CYS ASP LEU ARG VAL VAL GLU GLU SEQRES 11 A 262 ASP ALA VAL LEU GLY VAL PHE CYS ARG ARG TRP GLY VAL SEQRES 12 A 262 PRO LEU ILE ASP GLY GLY THR ILE ARG LEU PRO ARG LEU SEQRES 13 A 262 ILE GLY HIS SER ARG ALA MET ASP LEU ILE LEU THR GLY SEQRES 14 A 262 ARG PRO VAL HIS ALA ASN GLU ALA LEU ASP ILE GLY LEU SEQRES 15 A 262 VAL ASN ARG VAL VAL ALA ARG GLY GLN ALA ARG GLU ALA SEQRES 16 A 262 ALA GLU THR LEU ALA ALA GLU ILE ALA ALA PHE PRO GLN SEQRES 17 A 262 GLN CYS VAL ARG ALA ASP ARG ASP SER ALA ILE ALA GLN SEQRES 18 A 262 TRP GLY MET ALA GLU GLU ALA ALA LEU ASP ASN GLU PHE SEQRES 19 A 262 GLY SER ILE GLU ARG VAL ALA THR GLU ALA LEU GLU GLY SEQRES 20 A 262 ALA GLY ARG PHE ALA ALA GLY GLU GLY ARG HIS GLY ALA SEQRES 21 A 262 GLY VAL SEQRES 1 B 262 GLY PRO GLY SER MET SER GLU GLU MET GLN PRO ALA VAL SEQRES 2 B 262 ARG VAL GLU LYS ALA GLY PRO VAL THR THR VAL ILE LEU SEQRES 3 B 262 ASN ARG PRO HIS ALA ARG ASN ALA VAL ASP GLY PRO THR SEQRES 4 B 262 ALA ALA ALA LEU LEU ALA ALA PHE THR GLU PHE ASP ALA SEQRES 5 B 262 ASP PRO GLU ALA SER VAL ALA VAL LEU TRP GLY ASP ASN SEQRES 6 B 262 GLY THR PHE CYS ALA GLY ALA ASP LEU LYS ALA MET GLY SEQRES 7 B 262 THR ASP ARG GLY ASN GLU LEU HIS PRO HIS GLY PRO GLY SEQRES 8 B 262 PRO MET GLY PRO SER ARG LEU ARG LEU SER LYS PRO VAL SEQRES 9 B 262 ILE ALA ALA ILE SER GLY HIS ALA VAL ALA GLY GLY ILE SEQRES 10 B 262 GLU LEU ALA LEU TRP CYS ASP LEU ARG VAL VAL GLU GLU SEQRES 11 B 262 ASP ALA VAL LEU GLY VAL PHE CYS ARG ARG TRP GLY VAL SEQRES 12 B 262 PRO LEU ILE ASP GLY GLY THR ILE ARG LEU PRO ARG LEU SEQRES 13 B 262 ILE GLY HIS SER ARG ALA MET ASP LEU ILE LEU THR GLY SEQRES 14 B 262 ARG PRO VAL HIS ALA ASN GLU ALA LEU ASP ILE GLY LEU SEQRES 15 B 262 VAL ASN ARG VAL VAL ALA ARG GLY GLN ALA ARG GLU ALA SEQRES 16 B 262 ALA GLU THR LEU ALA ALA GLU ILE ALA ALA PHE PRO GLN SEQRES 17 B 262 GLN CYS VAL ARG ALA ASP ARG ASP SER ALA ILE ALA GLN SEQRES 18 B 262 TRP GLY MET ALA GLU GLU ALA ALA LEU ASP ASN GLU PHE SEQRES 19 B 262 GLY SER ILE GLU ARG VAL ALA THR GLU ALA LEU GLU GLY SEQRES 20 B 262 ALA GLY ARG PHE ALA ALA GLY GLU GLY ARG HIS GLY ALA SEQRES 21 B 262 GLY VAL SEQRES 1 C 262 GLY PRO GLY SER MET SER GLU GLU MET GLN PRO ALA VAL SEQRES 2 C 262 ARG VAL GLU LYS ALA GLY PRO VAL THR THR VAL ILE LEU SEQRES 3 C 262 ASN ARG PRO HIS ALA ARG ASN ALA VAL ASP GLY PRO THR SEQRES 4 C 262 ALA ALA ALA LEU LEU ALA ALA PHE THR GLU PHE ASP ALA SEQRES 5 C 262 ASP PRO GLU ALA SER VAL ALA VAL LEU TRP GLY ASP ASN SEQRES 6 C 262 GLY THR PHE CYS ALA GLY ALA ASP LEU LYS ALA MET GLY SEQRES 7 C 262 THR ASP ARG GLY ASN GLU LEU HIS PRO HIS GLY PRO GLY SEQRES 8 C 262 PRO MET GLY PRO SER ARG LEU ARG LEU SER LYS PRO VAL SEQRES 9 C 262 ILE ALA ALA ILE SER GLY HIS ALA VAL ALA GLY GLY ILE SEQRES 10 C 262 GLU LEU ALA LEU TRP CYS ASP LEU ARG VAL VAL GLU GLU SEQRES 11 C 262 ASP ALA VAL LEU GLY VAL PHE CYS ARG ARG TRP GLY VAL SEQRES 12 C 262 PRO LEU ILE ASP GLY GLY THR ILE ARG LEU PRO ARG LEU SEQRES 13 C 262 ILE GLY HIS SER ARG ALA MET ASP LEU ILE LEU THR GLY SEQRES 14 C 262 ARG PRO VAL HIS ALA ASN GLU ALA LEU ASP ILE GLY LEU SEQRES 15 C 262 VAL ASN ARG VAL VAL ALA ARG GLY GLN ALA ARG GLU ALA SEQRES 16 C 262 ALA GLU THR LEU ALA ALA GLU ILE ALA ALA PHE PRO GLN SEQRES 17 C 262 GLN CYS VAL ARG ALA ASP ARG ASP SER ALA ILE ALA GLN SEQRES 18 C 262 TRP GLY MET ALA GLU GLU ALA ALA LEU ASP ASN GLU PHE SEQRES 19 C 262 GLY SER ILE GLU ARG VAL ALA THR GLU ALA LEU GLU GLY SEQRES 20 C 262 ALA GLY ARG PHE ALA ALA GLY GLU GLY ARG HIS GLY ALA SEQRES 21 C 262 GLY VAL HET CL A 259 1 HET GOL B 259 6 HET CL B 260 1 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CL 2(CL 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 7 HOH *721(H2 O) HELIX 1 1 ARG A 24 ARG A 28 5 5 HELIX 2 2 ASP A 32 ASP A 49 1 18 HELIX 3 3 ALA A 110 CYS A 119 1 10 HELIX 4 4 PHE A 133 GLY A 138 1 6 HELIX 5 5 GLY A 144 GLY A 154 1 11 HELIX 6 6 GLY A 154 GLY A 165 1 12 HELIX 7 7 ALA A 170 ILE A 176 1 7 HELIX 8 8 GLN A 187 PHE A 202 1 16 HELIX 9 9 PRO A 203 GLN A 217 1 15 HELIX 10 10 ALA A 221 GLY A 231 1 11 HELIX 11 11 GLY A 231 THR A 238 1 8 HELIX 12 12 ARG B 24 ARG B 28 5 5 HELIX 13 13 ASP B 32 ASP B 49 1 18 HELIX 14 14 ALA B 110 CYS B 119 1 10 HELIX 15 15 PHE B 133 GLY B 138 1 6 HELIX 16 16 GLY B 144 GLY B 154 1 11 HELIX 17 17 GLY B 154 GLY B 165 1 12 HELIX 18 18 ALA B 170 ILE B 176 1 7 HELIX 19 19 GLN B 187 ALA B 201 1 15 HELIX 20 20 PRO B 203 GLN B 217 1 15 HELIX 21 21 ALA B 221 GLY B 231 1 11 HELIX 22 22 GLY B 231 GLY B 243 1 13 HELIX 23 23 ARG C 24 ARG C 28 5 5 HELIX 24 24 ASP C 32 ASP C 49 1 18 HELIX 25 25 ALA C 110 CYS C 119 1 10 HELIX 26 26 PHE C 133 GLY C 138 1 6 HELIX 27 27 GLY C 144 GLY C 154 1 11 HELIX 28 28 GLY C 154 GLY C 165 1 12 HELIX 29 29 ALA C 170 ILE C 176 1 7 HELIX 30 30 GLN C 187 ALA C 201 1 15 HELIX 31 31 PRO C 203 GLN C 217 1 15 HELIX 32 32 ALA C 221 GLY C 231 1 11 HELIX 33 33 GLY C 231 VAL C 236 1 6 HELIX 34 34 VAL C 236 GLY C 243 1 8 SHEET 1 A 6 VAL A 9 ALA A 14 0 SHEET 2 A 6 VAL A 17 LEU A 22 -1 O ILE A 21 N ARG A 10 SHEET 3 A 6 VAL A 54 GLY A 59 1 O VAL A 56 N VAL A 20 SHEET 4 A 6 VAL A 100 ILE A 104 1 O ALA A 103 N LEU A 57 SHEET 5 A 6 LEU A 121 GLU A 125 1 O LEU A 121 N ALA A 102 SHEET 6 A 6 ARG A 181 VAL A 183 1 O ARG A 181 N VAL A 124 SHEET 1 B 3 HIS A 107 VAL A 109 0 SHEET 2 B 3 VAL A 129 GLY A 131 1 O VAL A 129 N ALA A 108 SHEET 3 B 3 VAL A 168 HIS A 169 -1 O VAL A 168 N LEU A 130 SHEET 1 C 6 VAL B 9 ALA B 14 0 SHEET 2 C 6 VAL B 17 LEU B 22 -1 O THR B 19 N GLU B 12 SHEET 3 C 6 VAL B 54 GLY B 59 1 O VAL B 56 N VAL B 20 SHEET 4 C 6 VAL B 100 ILE B 104 1 O ALA B 103 N LEU B 57 SHEET 5 C 6 LEU B 121 GLU B 125 1 O VAL B 123 N ALA B 102 SHEET 6 C 6 ARG B 181 VAL B 183 1 O ARG B 181 N VAL B 124 SHEET 1 D 3 HIS B 107 VAL B 109 0 SHEET 2 D 3 VAL B 129 GLY B 131 1 O VAL B 129 N ALA B 108 SHEET 3 D 3 VAL B 168 HIS B 169 -1 O VAL B 168 N LEU B 130 SHEET 1 E 6 VAL C 9 ALA C 14 0 SHEET 2 E 6 VAL C 17 LEU C 22 -1 O THR C 19 N GLU C 12 SHEET 3 E 6 VAL C 54 GLY C 59 1 O VAL C 56 N VAL C 20 SHEET 4 E 6 VAL C 100 ILE C 104 1 O ALA C 103 N LEU C 57 SHEET 5 E 6 LEU C 121 GLU C 125 1 O LEU C 121 N ALA C 102 SHEET 6 E 6 ARG C 181 VAL C 183 1 O ARG C 181 N VAL C 124 SHEET 1 F 3 HIS C 107 VAL C 109 0 SHEET 2 F 3 VAL C 129 GLY C 131 1 O VAL C 129 N ALA C 108 SHEET 3 F 3 VAL C 168 HIS C 169 -1 O VAL C 168 N LEU C 130 CISPEP 1 GLY A 85 PRO A 86 0 5.36 CISPEP 2 GLY B 85 PRO B 86 0 0.34 CISPEP 3 GLY C 85 PRO C 86 0 1.37 SITE 1 AC1 5 ILE A 153 GLY A 154 SER A 156 ARG A 157 SITE 2 AC1 5 LEU C 152 SITE 1 AC2 10 ARG A 151 TRP A 218 GLY A 219 GLN B 217 SITE 2 AC2 10 TRP B 218 GLY B 219 MET B 220 ARG C 151 SITE 3 AC2 10 TRP C 218 GLY C 219 SITE 1 AC3 5 LEU A 152 ILE B 153 GLY B 154 SER B 156 SITE 2 AC3 5 ARG B 157 CRYST1 98.318 98.213 103.951 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010171 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009620 0.00000