HEADER LYASE 25-MAR-11 3R9S TITLE STRUCTURE OF A CARNITINYL-COA DEHYDRATASE FROM MYCOBACTERIUM AVIUM 104 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARNITINYL-COA DEHYDRATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 4.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 STRAIN: 104; SOURCE 5 GENE: MAV_1277; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 CARNITINYL-COA DEHYDRATASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3R9S 1 REMARK SEQADV REVDAT 3 08-NOV-17 3R9S 1 REMARK REVDAT 2 22-APR-15 3R9S 1 JRNL VERSN REVDAT 1 13-APR-11 3R9S 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 40699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2051 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2798 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.82000 REMARK 3 B22 (A**2) : -1.71000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5695 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3701 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7767 ; 1.241 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9010 ; 0.921 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 780 ; 5.680 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;35.853 ;23.498 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 813 ;13.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.778 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 901 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6603 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1127 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3847 ; 0.538 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1584 ; 0.119 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6045 ; 1.002 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 1.734 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1715 ; 2.797 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0221 -7.6007 -31.2107 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.0243 REMARK 3 T33: 0.0487 T12: -0.0055 REMARK 3 T13: -0.0189 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.7764 L22: 0.2174 REMARK 3 L33: 0.7602 L12: -0.0218 REMARK 3 L13: -0.0643 L23: -0.0554 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0378 S13: 0.0074 REMARK 3 S21: -0.0336 S22: 0.0141 S23: 0.0656 REMARK 3 S31: 0.0164 S32: -0.0750 S33: -0.0153 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 263 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5321 -16.6684 -3.8619 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.0419 REMARK 3 T33: 0.0072 T12: -0.0048 REMARK 3 T13: -0.0072 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.3021 L22: 0.6242 REMARK 3 L33: 0.7563 L12: -0.1903 REMARK 3 L13: -0.5261 L23: -0.2941 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.1265 S13: 0.0159 REMARK 3 S21: 0.1004 S22: 0.0111 S23: -0.0613 REMARK 3 S31: -0.0125 S32: 0.1032 S33: 0.0281 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 263 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2195 -11.7255 -31.7657 REMARK 3 T TENSOR REMARK 3 T11: 0.0253 T22: 0.0386 REMARK 3 T33: 0.0059 T12: 0.0013 REMARK 3 T13: 0.0037 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.0532 L22: 0.9420 REMARK 3 L33: 0.6458 L12: -0.1694 REMARK 3 L13: 0.1299 L23: 0.0703 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.0763 S13: 0.0133 REMARK 3 S21: -0.1502 S22: -0.0094 S23: -0.0190 REMARK 3 S31: -0.0048 S32: 0.0656 S33: 0.0130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3R9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40794 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3R0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, CRYOPROTECTANT: 25% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.48050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ILE B 72 REMARK 465 ALA B 73 REMARK 465 ARG B 74 REMARK 465 ARG B 75 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 ALA C 253 REMARK 465 GLU C 254 REMARK 465 LYS C 255 REMARK 465 ARG C 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 LEU A 240 CG CD1 CD2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 60 CG OD1 OD2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 ASN B 77 CG OD1 ND2 REMARK 470 THR B 107 OG1 CG2 REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 237 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 470 ALA B 251 O REMARK 470 PHE B 252 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 GLN B 261 CG CD OE1 NE2 REMARK 470 ARG B 263 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 24 CG CD OE1 OE2 REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 75 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 137 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 219 CG OD1 OD2 REMARK 470 ARG C 237 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 241 O CG CD CE NZ REMARK 470 GLU C 243 CG CD OE1 OE2 REMARK 470 LYS C 246 CG CD CE NZ REMARK 470 ARG C 250 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 252 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 257 CG CD OE1 OE2 REMARK 470 VAL C 259 CG1 CG2 REMARK 470 GLN C 261 CG CD OE1 NE2 REMARK 470 ARG C 263 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C 159 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 91 -46.58 -130.03 REMARK 500 ALA A 143 40.53 -90.57 REMARK 500 ASN B 21 50.06 -113.79 REMARK 500 ASN B 30 -167.32 -123.71 REMARK 500 ALA B 108 23.64 -143.09 REMARK 500 LEU B 139 -164.32 -121.38 REMARK 500 ALA B 141 91.88 -69.09 REMARK 500 ALA B 143 41.06 -100.85 REMARK 500 CYS C 64 117.03 -166.08 REMARK 500 ALA C 143 33.49 -94.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ C 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 266 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYAVA.01530.B RELATED DB: TARGETDB DBREF 3R9S A 1 263 UNP A0QC84 A0QC84_MYCA1 1 263 DBREF 3R9S B 1 263 UNP A0QC84 A0QC84_MYCA1 1 263 DBREF 3R9S C 1 263 UNP A0QC84 A0QC84_MYCA1 1 263 SEQADV 3R9S GLY A -3 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S PRO A -2 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S GLY A -1 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S SER A 0 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S GLY B -3 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S PRO B -2 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S GLY B -1 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S SER B 0 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S GLY C -3 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S PRO C -2 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S GLY C -1 UNP A0QC84 EXPRESSION TAG SEQADV 3R9S SER C 0 UNP A0QC84 EXPRESSION TAG SEQRES 1 A 267 GLY PRO GLY SER MET THR ASP ALA PRO GLY ALA LEU ALA SEQRES 2 A 267 GLU ARG ARG GLY ASN VAL MET VAL ILE THR ILE ASN ARG SEQRES 3 A 267 PRO GLU ALA ARG ASN ALA VAL ASN ALA ALA VAL SER ILE SEQRES 4 A 267 GLY VAL GLY ASP ALA LEU GLU GLU ALA GLN HIS ASP PRO SEQRES 5 A 267 GLU VAL ARG ALA VAL VAL LEU THR GLY ALA GLY ASP LYS SEQRES 6 A 267 SER PHE CYS ALA GLY ALA ASP LEU LYS ALA ILE ALA ARG SEQRES 7 A 267 ARG GLU ASN LEU TYR HIS PRO ASP HIS PRO GLU TRP GLY SEQRES 8 A 267 PHE ALA GLY TYR VAL ARG HIS PHE ILE ASP LYS PRO THR SEQRES 9 A 267 ILE ALA ALA VAL ASN GLY THR ALA LEU GLY GLY GLY THR SEQRES 10 A 267 GLU LEU ALA LEU ALA SER ASP LEU VAL VAL ALA ASP GLU SEQRES 11 A 267 ARG ALA GLN PHE GLY LEU PRO GLU VAL LYS ARG GLY LEU SEQRES 12 A 267 ILE ALA ALA ALA GLY GLY VAL PHE ARG ILE ALA GLU GLN SEQRES 13 A 267 LEU PRO ARG LYS VAL ALA MET ARG LEU LEU LEU THR GLY SEQRES 14 A 267 GLU PRO LEU SER ALA ALA ALA ALA ARG ASP TRP GLY LEU SEQRES 15 A 267 ILE ASN GLU VAL VAL GLU ALA GLY SER VAL LEU ASP ALA SEQRES 16 A 267 ALA LEU ALA LEU ALA SER ALA ILE THR VAL ASN ALA PRO SEQRES 17 A 267 LEU SER VAL GLN ALA SER LYS ARG ILE ALA TYR GLY VAL SEQRES 18 A 267 ASP ASP GLY VAL VAL VAL GLY ASP GLU PRO GLY TRP ASP SEQRES 19 A 267 ARG THR MET ARG GLU MET ARG ALA LEU LEU LYS SER GLU SEQRES 20 A 267 ASP ALA LYS GLU GLY PRO ARG ALA PHE ALA GLU LYS ARG SEQRES 21 A 267 GLU PRO VAL TRP GLN ALA ARG SEQRES 1 B 267 GLY PRO GLY SER MET THR ASP ALA PRO GLY ALA LEU ALA SEQRES 2 B 267 GLU ARG ARG GLY ASN VAL MET VAL ILE THR ILE ASN ARG SEQRES 3 B 267 PRO GLU ALA ARG ASN ALA VAL ASN ALA ALA VAL SER ILE SEQRES 4 B 267 GLY VAL GLY ASP ALA LEU GLU GLU ALA GLN HIS ASP PRO SEQRES 5 B 267 GLU VAL ARG ALA VAL VAL LEU THR GLY ALA GLY ASP LYS SEQRES 6 B 267 SER PHE CYS ALA GLY ALA ASP LEU LYS ALA ILE ALA ARG SEQRES 7 B 267 ARG GLU ASN LEU TYR HIS PRO ASP HIS PRO GLU TRP GLY SEQRES 8 B 267 PHE ALA GLY TYR VAL ARG HIS PHE ILE ASP LYS PRO THR SEQRES 9 B 267 ILE ALA ALA VAL ASN GLY THR ALA LEU GLY GLY GLY THR SEQRES 10 B 267 GLU LEU ALA LEU ALA SER ASP LEU VAL VAL ALA ASP GLU SEQRES 11 B 267 ARG ALA GLN PHE GLY LEU PRO GLU VAL LYS ARG GLY LEU SEQRES 12 B 267 ILE ALA ALA ALA GLY GLY VAL PHE ARG ILE ALA GLU GLN SEQRES 13 B 267 LEU PRO ARG LYS VAL ALA MET ARG LEU LEU LEU THR GLY SEQRES 14 B 267 GLU PRO LEU SER ALA ALA ALA ALA ARG ASP TRP GLY LEU SEQRES 15 B 267 ILE ASN GLU VAL VAL GLU ALA GLY SER VAL LEU ASP ALA SEQRES 16 B 267 ALA LEU ALA LEU ALA SER ALA ILE THR VAL ASN ALA PRO SEQRES 17 B 267 LEU SER VAL GLN ALA SER LYS ARG ILE ALA TYR GLY VAL SEQRES 18 B 267 ASP ASP GLY VAL VAL VAL GLY ASP GLU PRO GLY TRP ASP SEQRES 19 B 267 ARG THR MET ARG GLU MET ARG ALA LEU LEU LYS SER GLU SEQRES 20 B 267 ASP ALA LYS GLU GLY PRO ARG ALA PHE ALA GLU LYS ARG SEQRES 21 B 267 GLU PRO VAL TRP GLN ALA ARG SEQRES 1 C 267 GLY PRO GLY SER MET THR ASP ALA PRO GLY ALA LEU ALA SEQRES 2 C 267 GLU ARG ARG GLY ASN VAL MET VAL ILE THR ILE ASN ARG SEQRES 3 C 267 PRO GLU ALA ARG ASN ALA VAL ASN ALA ALA VAL SER ILE SEQRES 4 C 267 GLY VAL GLY ASP ALA LEU GLU GLU ALA GLN HIS ASP PRO SEQRES 5 C 267 GLU VAL ARG ALA VAL VAL LEU THR GLY ALA GLY ASP LYS SEQRES 6 C 267 SER PHE CYS ALA GLY ALA ASP LEU LYS ALA ILE ALA ARG SEQRES 7 C 267 ARG GLU ASN LEU TYR HIS PRO ASP HIS PRO GLU TRP GLY SEQRES 8 C 267 PHE ALA GLY TYR VAL ARG HIS PHE ILE ASP LYS PRO THR SEQRES 9 C 267 ILE ALA ALA VAL ASN GLY THR ALA LEU GLY GLY GLY THR SEQRES 10 C 267 GLU LEU ALA LEU ALA SER ASP LEU VAL VAL ALA ASP GLU SEQRES 11 C 267 ARG ALA GLN PHE GLY LEU PRO GLU VAL LYS ARG GLY LEU SEQRES 12 C 267 ILE ALA ALA ALA GLY GLY VAL PHE ARG ILE ALA GLU GLN SEQRES 13 C 267 LEU PRO ARG LYS VAL ALA MET ARG LEU LEU LEU THR GLY SEQRES 14 C 267 GLU PRO LEU SER ALA ALA ALA ALA ARG ASP TRP GLY LEU SEQRES 15 C 267 ILE ASN GLU VAL VAL GLU ALA GLY SER VAL LEU ASP ALA SEQRES 16 C 267 ALA LEU ALA LEU ALA SER ALA ILE THR VAL ASN ALA PRO SEQRES 17 C 267 LEU SER VAL GLN ALA SER LYS ARG ILE ALA TYR GLY VAL SEQRES 18 C 267 ASP ASP GLY VAL VAL VAL GLY ASP GLU PRO GLY TRP ASP SEQRES 19 C 267 ARG THR MET ARG GLU MET ARG ALA LEU LEU LYS SER GLU SEQRES 20 C 267 ASP ALA LYS GLU GLY PRO ARG ALA PHE ALA GLU LYS ARG SEQRES 21 C 267 GLU PRO VAL TRP GLN ALA ARG HET BEZ A 264 9 HET EDO A 265 4 HET EDO B 264 4 HET BEZ C 264 9 HET EDO C 265 4 HET EDO C 266 4 HETNAM BEZ BENZOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 BEZ 2(C7 H6 O2) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 10 HOH *453(H2 O) HELIX 1 1 ARG A 22 ARG A 26 5 5 HELIX 2 2 ASN A 30 ASP A 47 1 18 HELIX 3 3 ASP A 68 ARG A 74 1 7 HELIX 4 4 HIS A 83 TYR A 91 5 9 HELIX 5 5 GLY A 110 SER A 119 1 10 HELIX 6 6 LEU A 132 GLY A 138 5 7 HELIX 7 7 GLY A 144 LEU A 153 1 10 HELIX 8 8 PRO A 154 GLY A 165 1 12 HELIX 9 9 ALA A 170 TRP A 176 1 7 HELIX 10 10 SER A 187 VAL A 201 1 15 HELIX 11 11 ALA A 203 GLY A 216 1 14 HELIX 12 12 ASP A 225 SER A 242 1 18 HELIX 13 13 GLU A 243 ALA A 245 5 3 HELIX 14 14 LYS A 246 GLU A 254 1 9 HELIX 15 15 ARG B 22 ARG B 26 5 5 HELIX 16 16 ASN B 30 ASP B 47 1 18 HELIX 17 17 HIS B 83 TYR B 91 5 9 HELIX 18 18 GLY B 110 SER B 119 1 10 HELIX 19 19 LEU B 132 ARG B 137 5 6 HELIX 20 20 GLY B 144 LEU B 153 1 10 HELIX 21 21 PRO B 154 GLY B 165 1 12 HELIX 22 22 ALA B 170 TRP B 176 1 7 HELIX 23 23 SER B 187 VAL B 201 1 15 HELIX 24 24 ALA B 203 TYR B 215 1 13 HELIX 25 25 ASP B 225 SER B 242 1 18 HELIX 26 26 GLU B 243 GLU B 254 1 12 HELIX 27 27 ARG C 22 ARG C 26 5 5 HELIX 28 28 ASN C 30 ASP C 47 1 18 HELIX 29 29 ASP C 68 ARG C 74 1 7 HELIX 30 30 HIS C 83 TYR C 91 5 9 HELIX 31 31 GLY C 110 SER C 119 1 10 HELIX 32 32 LEU C 132 GLY C 138 5 7 HELIX 33 33 GLY C 144 LEU C 153 1 10 HELIX 34 34 PRO C 154 GLY C 165 1 12 HELIX 35 35 ALA C 170 TRP C 176 1 7 HELIX 36 36 SER C 187 VAL C 201 1 15 HELIX 37 37 ALA C 203 GLY C 216 1 14 HELIX 38 38 ASP C 225 LYS C 241 1 17 HELIX 39 39 GLU C 243 GLY C 248 1 6 SHEET 1 A 6 ALA A 7 ARG A 12 0 SHEET 2 A 6 VAL A 15 ILE A 20 -1 O VAL A 17 N GLU A 10 SHEET 3 A 6 ALA A 52 GLY A 57 1 O VAL A 54 N ILE A 18 SHEET 4 A 6 THR A 100 VAL A 104 1 O ALA A 103 N LEU A 55 SHEET 5 A 6 LEU A 121 ASP A 125 1 O VAL A 123 N VAL A 104 SHEET 6 A 6 GLU A 181 VAL A 183 1 O GLU A 181 N ALA A 124 SHEET 1 B 4 SER A 62 CYS A 64 0 SHEET 2 B 4 THR A 107 LEU A 109 1 O THR A 107 N CYS A 64 SHEET 3 B 4 GLN A 129 GLY A 131 1 O GLN A 129 N ALA A 108 SHEET 4 B 4 LEU A 168 SER A 169 -1 O LEU A 168 N PHE A 130 SHEET 1 C 2 VAL A 217 ASP A 218 0 SHEET 2 C 2 VAL A 221 VAL A 222 -1 O VAL A 221 N ASP A 218 SHEET 1 D 6 ALA B 7 ARG B 12 0 SHEET 2 D 6 VAL B 15 ILE B 20 -1 O VAL B 17 N GLU B 10 SHEET 3 D 6 ALA B 52 GLY B 57 1 O VAL B 54 N ILE B 18 SHEET 4 D 6 THR B 100 VAL B 104 1 O ALA B 103 N LEU B 55 SHEET 5 D 6 LEU B 121 ASP B 125 1 O VAL B 123 N VAL B 104 SHEET 6 D 6 GLU B 181 VAL B 183 1 O GLU B 181 N ALA B 124 SHEET 1 E 2 GLN B 129 PHE B 130 0 SHEET 2 E 2 LEU B 168 SER B 169 -1 O LEU B 168 N PHE B 130 SHEET 1 F 2 VAL B 217 ASP B 218 0 SHEET 2 F 2 VAL B 221 VAL B 222 -1 O VAL B 221 N ASP B 218 SHEET 1 G 6 ALA C 7 ARG C 12 0 SHEET 2 G 6 VAL C 15 ILE C 20 -1 O VAL C 17 N GLU C 10 SHEET 3 G 6 ALA C 52 GLY C 57 1 O VAL C 54 N ILE C 18 SHEET 4 G 6 THR C 100 VAL C 104 1 O ALA C 103 N LEU C 55 SHEET 5 G 6 LEU C 121 ASP C 125 1 O ASP C 125 N VAL C 104 SHEET 6 G 6 GLU C 181 VAL C 183 1 O GLU C 181 N ALA C 124 SHEET 1 H 4 SER C 62 CYS C 64 0 SHEET 2 H 4 THR C 107 LEU C 109 1 O THR C 107 N CYS C 64 SHEET 3 H 4 GLN C 129 GLY C 131 1 O GLN C 129 N ALA C 108 SHEET 4 H 4 LEU C 168 SER C 169 -1 O LEU C 168 N PHE C 130 SHEET 1 I 2 VAL C 217 ASP C 218 0 SHEET 2 I 2 VAL C 221 VAL C 222 -1 O VAL C 221 N ASP C 218 CISPEP 1 ALA C 251 PHE C 252 0 -1.48 SITE 1 AC1 8 ILE A 72 GLU A 114 GLU A 134 ILE A 140 SITE 2 AC1 8 ALA A 141 ALA A 142 ALA A 143 HOH A 287 SITE 1 AC2 6 LEU A 41 TYR A 91 HIS A 94 ILE A 96 SITE 2 AC2 6 THR A 100 ALA A 118 SITE 1 AC3 6 HIS B 94 PHE B 95 ILE B 96 THR B 100 SITE 2 AC3 6 ALA B 118 LYS B 211 SITE 1 AC4 7 ILE C 72 GLU C 114 GLU C 134 ALA C 141 SITE 2 AC4 7 ALA C 142 ALA C 143 HOH C 270 SITE 1 AC5 7 TYR C 91 HIS C 94 ILE C 96 THR C 100 SITE 2 AC5 7 ALA C 118 SER C 119 HOH C 297 SITE 1 AC6 7 ARG C 148 GLU C 151 GLN C 152 TYR C 215 SITE 2 AC6 7 ASP C 225 HOH C 291 HOH C 305 CRYST1 76.740 74.961 76.982 90.00 112.76 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013031 0.000000 0.005467 0.00000 SCALE2 0.000000 0.013340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014087 0.00000