HEADER LYASE 25-MAR-11 3R9T TITLE STRUCTURE OF ECHA1_1 FROM MYCOBACTERIUM PARATUBERCULOSIS ATCC BAA-968 TITLE 2 / K-10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECHA1_1; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 4.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1770; SOURCE 4 STRAIN: ATCC BAA-968 / K-10; SOURCE 5 GENE: ECHA1, MAP_2645C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 ENOYL-COA HYDRATASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3R9T 1 REMARK SEQADV REVDAT 3 08-NOV-17 3R9T 1 REMARK REVDAT 2 22-APR-15 3R9T 1 JRNL VERSN REVDAT 1 13-APR-11 3R9T 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 72306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4991 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5635 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.922 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5858 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3841 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8005 ; 1.348 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9339 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 807 ; 5.430 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;33.906 ;23.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;13.351 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;19.504 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 920 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6835 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1182 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3922 ; 0.613 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1610 ; 0.113 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6181 ; 1.126 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1936 ; 1.673 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1809 ; 2.791 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): 48.5582 37.1331 36.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.0708 T22: 0.0764 REMARK 3 T33: 0.0803 T12: -0.0298 REMARK 3 T13: 0.0083 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.8550 L22: 0.3461 REMARK 3 L33: 0.8280 L12: 0.2076 REMARK 3 L13: -0.2666 L23: 0.0313 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: -0.0257 S13: 0.0768 REMARK 3 S21: -0.0237 S22: -0.0054 S23: -0.0253 REMARK 3 S31: -0.0979 S32: 0.1677 S33: -0.0694 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 263 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3795 22.7282 36.7584 REMARK 3 T TENSOR REMARK 3 T11: 0.0538 T22: 0.0465 REMARK 3 T33: 0.1013 T12: -0.0024 REMARK 3 T13: -0.0131 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.7124 L22: 0.8436 REMARK 3 L33: 0.9938 L12: 0.1503 REMARK 3 L13: 0.0009 L23: -0.0264 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.0025 S13: -0.0709 REMARK 3 S21: -0.0109 S22: -0.0065 S23: 0.1456 REMARK 3 S31: 0.0582 S32: -0.1253 S33: -0.0019 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 263 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6017 29.5724 66.2088 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.1713 REMARK 3 T33: 0.0066 T12: -0.0200 REMARK 3 T13: -0.0047 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.3126 L22: 0.5097 REMARK 3 L33: 1.0412 L12: 0.1883 REMARK 3 L13: -0.1485 L23: 0.0801 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: -0.3551 S13: 0.0140 REMARK 3 S21: 0.1951 S22: 0.0035 S23: -0.0222 REMARK 3 S31: -0.0423 S32: 0.1608 S33: -0.0780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3R9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72409 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1UIY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG1500, 0.1 M PCTP BUFFER, PH 9, REMARK 280 CRYOPROTECTANT: 25% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.13700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 PHE C 252 REMARK 465 ALA C 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 THR B 2 OG1 CG2 REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 139 CG CD1 CD2 REMARK 470 LYS B 241 CG CD CE NZ REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 ARG B 263 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 3 CG OD1 OD2 REMARK 470 GLU C 24 CG CD OE1 OE2 REMARK 470 LYS C 61 CG CD CE NZ REMARK 470 LEU C 69 CG CD1 CD2 REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 ILE C 72 CG1 CG2 CD1 REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 75 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 76 CG CD OE1 OE2 REMARK 470 ARG C 137 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 219 CG OD1 OD2 REMARK 470 VAL C 221 CG1 CG2 REMARK 470 GLU C 226 CG CD OE1 OE2 REMARK 470 LYS C 241 CG CD CE NZ REMARK 470 GLU C 243 CG CD OE1 OE2 REMARK 470 LYS C 246 CG CD CE NZ REMARK 470 GLU C 254 CG CD OE1 OE2 REMARK 470 LYS C 255 CG CD CE NZ REMARK 470 GLU C 257 CG CD OE1 OE2 REMARK 470 ARG C 263 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 160 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 26 CG - CD - NE ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG B 26 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 26 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG C 51 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 64 116.61 -168.43 REMARK 500 TYR A 91 -45.34 -132.31 REMARK 500 LEU A 139 -164.44 -117.46 REMARK 500 ALA A 143 40.87 -90.43 REMARK 500 CYS B 64 115.38 -164.37 REMARK 500 TYR B 91 -45.62 -132.70 REMARK 500 LEU B 139 -161.86 -113.51 REMARK 500 ALA B 143 40.34 -89.68 REMARK 500 CYS C 64 115.36 -165.99 REMARK 500 ALA C 143 37.06 -91.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ B 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ C 264 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYPAA.01530.B RELATED DB: TARGETDB DBREF 3R9T A 1 263 UNP Q73WL5 Q73WL5_MYCPA 1 263 DBREF 3R9T B 1 263 UNP Q73WL5 Q73WL5_MYCPA 1 263 DBREF 3R9T C 1 263 UNP Q73WL5 Q73WL5_MYCPA 1 263 SEQADV 3R9T GLY A -3 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T PRO A -2 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T GLY A -1 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T SER A 0 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T GLY B -3 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T PRO B -2 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T GLY B -1 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T SER B 0 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T GLY C -3 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T PRO C -2 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T GLY C -1 UNP Q73WL5 EXPRESSION TAG SEQADV 3R9T SER C 0 UNP Q73WL5 EXPRESSION TAG SEQRES 1 A 267 GLY PRO GLY SER MET THR ASP ALA PRO GLY ALA LEU ALA SEQRES 2 A 267 GLU ARG ARG GLY ASN VAL MET VAL ILE THR ILE ASN ARG SEQRES 3 A 267 PRO GLU ALA ARG ASN ALA ILE ASN ALA ALA VAL SER ILE SEQRES 4 A 267 GLY VAL GLY ASP ALA LEU GLU GLU ALA GLN HIS ASP PRO SEQRES 5 A 267 GLU VAL ARG ALA VAL VAL LEU THR GLY ALA GLY ASP LYS SEQRES 6 A 267 SER PHE CYS ALA GLY ALA ASP LEU LYS ALA ILE ALA ARG SEQRES 7 A 267 ARG GLU ASN LEU TYR HIS PRO ASP HIS PRO GLU TRP GLY SEQRES 8 A 267 PHE ALA GLY TYR VAL ARG HIS PHE ILE ASP LYS PRO THR SEQRES 9 A 267 ILE ALA ALA VAL ASN GLY THR ALA LEU GLY GLY GLY THR SEQRES 10 A 267 GLU LEU ALA LEU ALA SER ASP LEU VAL VAL ALA ASP GLU SEQRES 11 A 267 ARG ALA GLN PHE GLY LEU PRO GLU VAL LYS ARG GLY LEU SEQRES 12 A 267 ILE ALA ALA ALA GLY GLY VAL PHE ARG ILE ALA GLU GLN SEQRES 13 A 267 LEU PRO ARG LYS VAL ALA MET ARG LEU LEU LEU THR GLY SEQRES 14 A 267 GLU PRO LEU SER ALA ALA ALA ALA ARG ASP TRP GLY LEU SEQRES 15 A 267 ILE ASN GLU VAL VAL GLU ALA GLY SER VAL LEU ASP ALA SEQRES 16 A 267 ALA LEU ALA LEU ALA SER ALA ILE THR VAL ASN ALA PRO SEQRES 17 A 267 LEU SER VAL GLN ALA SER LYS ARG ILE ALA TYR GLY VAL SEQRES 18 A 267 ASP ASP GLY VAL VAL VAL GLY ASP GLU PRO GLY TRP ASP SEQRES 19 A 267 ARG THR MET ARG GLU MET ARG ALA LEU LEU LYS SER GLU SEQRES 20 A 267 ASP ALA LYS GLU GLY PRO ARG ALA PHE ALA GLU LYS ARG SEQRES 21 A 267 GLU PRO VAL TRP GLN ALA ARG SEQRES 1 B 267 GLY PRO GLY SER MET THR ASP ALA PRO GLY ALA LEU ALA SEQRES 2 B 267 GLU ARG ARG GLY ASN VAL MET VAL ILE THR ILE ASN ARG SEQRES 3 B 267 PRO GLU ALA ARG ASN ALA ILE ASN ALA ALA VAL SER ILE SEQRES 4 B 267 GLY VAL GLY ASP ALA LEU GLU GLU ALA GLN HIS ASP PRO SEQRES 5 B 267 GLU VAL ARG ALA VAL VAL LEU THR GLY ALA GLY ASP LYS SEQRES 6 B 267 SER PHE CYS ALA GLY ALA ASP LEU LYS ALA ILE ALA ARG SEQRES 7 B 267 ARG GLU ASN LEU TYR HIS PRO ASP HIS PRO GLU TRP GLY SEQRES 8 B 267 PHE ALA GLY TYR VAL ARG HIS PHE ILE ASP LYS PRO THR SEQRES 9 B 267 ILE ALA ALA VAL ASN GLY THR ALA LEU GLY GLY GLY THR SEQRES 10 B 267 GLU LEU ALA LEU ALA SER ASP LEU VAL VAL ALA ASP GLU SEQRES 11 B 267 ARG ALA GLN PHE GLY LEU PRO GLU VAL LYS ARG GLY LEU SEQRES 12 B 267 ILE ALA ALA ALA GLY GLY VAL PHE ARG ILE ALA GLU GLN SEQRES 13 B 267 LEU PRO ARG LYS VAL ALA MET ARG LEU LEU LEU THR GLY SEQRES 14 B 267 GLU PRO LEU SER ALA ALA ALA ALA ARG ASP TRP GLY LEU SEQRES 15 B 267 ILE ASN GLU VAL VAL GLU ALA GLY SER VAL LEU ASP ALA SEQRES 16 B 267 ALA LEU ALA LEU ALA SER ALA ILE THR VAL ASN ALA PRO SEQRES 17 B 267 LEU SER VAL GLN ALA SER LYS ARG ILE ALA TYR GLY VAL SEQRES 18 B 267 ASP ASP GLY VAL VAL VAL GLY ASP GLU PRO GLY TRP ASP SEQRES 19 B 267 ARG THR MET ARG GLU MET ARG ALA LEU LEU LYS SER GLU SEQRES 20 B 267 ASP ALA LYS GLU GLY PRO ARG ALA PHE ALA GLU LYS ARG SEQRES 21 B 267 GLU PRO VAL TRP GLN ALA ARG SEQRES 1 C 267 GLY PRO GLY SER MET THR ASP ALA PRO GLY ALA LEU ALA SEQRES 2 C 267 GLU ARG ARG GLY ASN VAL MET VAL ILE THR ILE ASN ARG SEQRES 3 C 267 PRO GLU ALA ARG ASN ALA ILE ASN ALA ALA VAL SER ILE SEQRES 4 C 267 GLY VAL GLY ASP ALA LEU GLU GLU ALA GLN HIS ASP PRO SEQRES 5 C 267 GLU VAL ARG ALA VAL VAL LEU THR GLY ALA GLY ASP LYS SEQRES 6 C 267 SER PHE CYS ALA GLY ALA ASP LEU LYS ALA ILE ALA ARG SEQRES 7 C 267 ARG GLU ASN LEU TYR HIS PRO ASP HIS PRO GLU TRP GLY SEQRES 8 C 267 PHE ALA GLY TYR VAL ARG HIS PHE ILE ASP LYS PRO THR SEQRES 9 C 267 ILE ALA ALA VAL ASN GLY THR ALA LEU GLY GLY GLY THR SEQRES 10 C 267 GLU LEU ALA LEU ALA SER ASP LEU VAL VAL ALA ASP GLU SEQRES 11 C 267 ARG ALA GLN PHE GLY LEU PRO GLU VAL LYS ARG GLY LEU SEQRES 12 C 267 ILE ALA ALA ALA GLY GLY VAL PHE ARG ILE ALA GLU GLN SEQRES 13 C 267 LEU PRO ARG LYS VAL ALA MET ARG LEU LEU LEU THR GLY SEQRES 14 C 267 GLU PRO LEU SER ALA ALA ALA ALA ARG ASP TRP GLY LEU SEQRES 15 C 267 ILE ASN GLU VAL VAL GLU ALA GLY SER VAL LEU ASP ALA SEQRES 16 C 267 ALA LEU ALA LEU ALA SER ALA ILE THR VAL ASN ALA PRO SEQRES 17 C 267 LEU SER VAL GLN ALA SER LYS ARG ILE ALA TYR GLY VAL SEQRES 18 C 267 ASP ASP GLY VAL VAL VAL GLY ASP GLU PRO GLY TRP ASP SEQRES 19 C 267 ARG THR MET ARG GLU MET ARG ALA LEU LEU LYS SER GLU SEQRES 20 C 267 ASP ALA LYS GLU GLY PRO ARG ALA PHE ALA GLU LYS ARG SEQRES 21 C 267 GLU PRO VAL TRP GLN ALA ARG HET BEZ A 264 9 HET BEZ B 264 9 HET BEZ C 264 9 HETNAM BEZ BENZOIC ACID FORMUL 4 BEZ 3(C7 H6 O2) FORMUL 7 HOH *500(H2 O) HELIX 1 1 ARG A 22 ARG A 26 5 5 HELIX 2 2 ASN A 30 ASP A 47 1 18 HELIX 3 3 ASP A 68 ARG A 74 1 7 HELIX 4 4 HIS A 83 TYR A 91 5 9 HELIX 5 5 GLY A 110 SER A 119 1 10 HELIX 6 6 LEU A 132 ARG A 137 5 6 HELIX 7 7 GLY A 144 LEU A 153 1 10 HELIX 8 8 PRO A 154 GLY A 165 1 12 HELIX 9 9 ALA A 170 TRP A 176 1 7 HELIX 10 10 SER A 187 VAL A 201 1 15 HELIX 11 11 ALA A 203 TYR A 215 1 13 HELIX 12 12 ASP A 225 LEU A 240 1 16 HELIX 13 13 GLU A 243 GLU A 254 1 12 HELIX 14 14 ARG B 22 ARG B 26 5 5 HELIX 15 15 ASN B 30 ASP B 47 1 18 HELIX 16 16 ASP B 68 ARG B 74 1 7 HELIX 17 17 HIS B 83 TYR B 91 5 9 HELIX 18 18 GLY B 110 SER B 119 1 10 HELIX 19 19 LEU B 132 ARG B 137 5 6 HELIX 20 20 GLY B 144 LEU B 153 1 10 HELIX 21 21 PRO B 154 GLY B 165 1 12 HELIX 22 22 ALA B 170 TRP B 176 1 7 HELIX 23 23 SER B 187 VAL B 201 1 15 HELIX 24 24 ALA B 203 TYR B 215 1 13 HELIX 25 25 ASP B 225 LEU B 240 1 16 HELIX 26 26 SER B 242 GLU B 254 1 13 HELIX 27 27 ARG C 22 ARG C 26 5 5 HELIX 28 28 ASN C 30 ASP C 47 1 18 HELIX 29 29 ASP C 68 ARG C 74 1 7 HELIX 30 30 HIS C 83 TYR C 91 5 9 HELIX 31 31 GLY C 110 SER C 119 1 10 HELIX 32 32 LEU C 132 GLY C 138 5 7 HELIX 33 33 GLY C 144 LEU C 153 1 10 HELIX 34 34 PRO C 154 GLY C 165 1 12 HELIX 35 35 ALA C 170 TRP C 176 1 7 HELIX 36 36 SER C 187 VAL C 201 1 15 HELIX 37 37 ALA C 203 GLY C 216 1 14 HELIX 38 38 ASP C 225 LEU C 240 1 16 HELIX 39 39 GLU C 243 ALA C 251 1 9 SHEET 1 A 6 ALA A 7 ARG A 12 0 SHEET 2 A 6 VAL A 15 ILE A 20 -1 O THR A 19 N LEU A 8 SHEET 3 A 6 ALA A 52 GLY A 57 1 O VAL A 54 N ILE A 18 SHEET 4 A 6 THR A 100 VAL A 104 1 O ALA A 103 N LEU A 55 SHEET 5 A 6 LEU A 121 ASP A 125 1 O LEU A 121 N ALA A 102 SHEET 6 A 6 GLU A 181 VAL A 183 1 O GLU A 181 N ALA A 124 SHEET 1 B 2 SER A 62 CYS A 64 0 SHEET 2 B 2 THR A 107 ALA A 108 1 O THR A 107 N CYS A 64 SHEET 1 C 2 GLN A 129 PHE A 130 0 SHEET 2 C 2 LEU A 168 SER A 169 -1 O LEU A 168 N PHE A 130 SHEET 1 D 2 VAL A 217 ASP A 218 0 SHEET 2 D 2 VAL A 221 VAL A 222 -1 O VAL A 221 N ASP A 218 SHEET 1 E 6 ALA B 7 ARG B 12 0 SHEET 2 E 6 VAL B 15 ILE B 20 -1 O VAL B 17 N GLU B 10 SHEET 3 E 6 ALA B 52 GLY B 57 1 O VAL B 54 N ILE B 18 SHEET 4 E 6 THR B 100 VAL B 104 1 O ALA B 103 N LEU B 55 SHEET 5 E 6 LEU B 121 ASP B 125 1 O ASP B 125 N VAL B 104 SHEET 6 E 6 GLU B 181 VAL B 183 1 O GLU B 181 N ALA B 124 SHEET 1 F 4 SER B 62 CYS B 64 0 SHEET 2 F 4 THR B 107 LEU B 109 1 O THR B 107 N CYS B 64 SHEET 3 F 4 GLN B 129 GLY B 131 1 O GLN B 129 N ALA B 108 SHEET 4 F 4 LEU B 168 SER B 169 -1 O LEU B 168 N PHE B 130 SHEET 1 G 2 VAL B 217 ASP B 218 0 SHEET 2 G 2 VAL B 221 VAL B 222 -1 O VAL B 221 N ASP B 218 SHEET 1 H 6 ALA C 7 ARG C 12 0 SHEET 2 H 6 VAL C 15 ILE C 20 -1 O VAL C 17 N GLU C 10 SHEET 3 H 6 ALA C 52 GLY C 57 1 O VAL C 54 N ILE C 18 SHEET 4 H 6 THR C 100 VAL C 104 1 O ALA C 103 N LEU C 55 SHEET 5 H 6 LEU C 121 ASP C 125 1 O ASP C 125 N VAL C 104 SHEET 6 H 6 GLU C 181 VAL C 183 1 O VAL C 183 N ALA C 124 SHEET 1 I 4 SER C 62 CYS C 64 0 SHEET 2 I 4 THR C 107 LEU C 109 1 O THR C 107 N CYS C 64 SHEET 3 I 4 GLN C 129 GLY C 131 1 O GLN C 129 N ALA C 108 SHEET 4 I 4 LEU C 168 SER C 169 -1 O LEU C 168 N PHE C 130 SHEET 1 J 2 VAL C 217 ASP C 218 0 SHEET 2 J 2 VAL C 221 VAL C 222 -1 O VAL C 221 N ASP C 218 SITE 1 AC1 8 ILE A 72 GLU A 114 GLU A 134 ALA A 141 SITE 2 AC1 8 ALA A 142 ALA A 143 MET A 236 HOH A 279 SITE 1 AC2 6 ILE B 72 GLU B 114 GLU B 134 ALA B 142 SITE 2 AC2 6 ALA B 143 HOH B 319 SITE 1 AC3 7 ALA C 67 GLU C 114 GLU C 134 ALA C 141 SITE 2 AC3 7 ALA C 142 ALA C 143 HOH C 323 CRYST1 68.092 78.274 75.552 90.00 115.13 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014686 0.000000 0.006888 0.00000 SCALE2 0.000000 0.012776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014619 0.00000