HEADER OXIDOREDUCTASE 25-MAR-11 3R9U TITLE THIOREDOXIN-DISULFIDE REDUCTASE FROM CAMPYLOBACTER JEJUNI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 STRAIN: SUBSP. JEJUNI NCTC 11168; SOURCE 5 GENE: CJ0146C, TRXB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, THIOREDOXIN-DISULFIDE REDUCTASE, FAD, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,M.ZHOU,K.KWON,K.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 08-NOV-17 3R9U 1 REMARK REVDAT 1 06-APR-11 3R9U 0 JRNL AUTH J.OSIPIUK,M.ZHOU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL THIOREDOXIN-DISULFIDE REDUCTASE FROM CAMPYLOBACTER JEJUNI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2344 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4644 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.08000 REMARK 3 B22 (A**2) : -2.19000 REMARK 3 B33 (A**2) : 4.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.025 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4936 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6669 ; 1.806 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 653 ; 6.172 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;37.851 ;25.497 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 894 ;18.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.982 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 742 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3625 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3118 ; 0.933 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4972 ; 1.756 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1818 ; 3.034 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1682 ; 4.863 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9733 34.2778 18.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.1477 REMARK 3 T33: 0.0558 T12: 0.0150 REMARK 3 T13: 0.0152 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 1.7765 L22: 0.2132 REMARK 3 L33: 0.5277 L12: -0.2823 REMARK 3 L13: 0.6267 L23: -0.3151 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: 0.1816 S13: -0.0630 REMARK 3 S21: -0.0506 S22: -0.0274 S23: -0.0591 REMARK 3 S31: 0.0274 S32: 0.0197 S33: 0.0798 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1965 8.8153 19.4418 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.0811 REMARK 3 T33: 0.1041 T12: 0.0202 REMARK 3 T13: -0.0222 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 1.0170 L22: 1.5657 REMARK 3 L33: 0.6610 L12: 0.0829 REMARK 3 L13: -0.4312 L23: -0.8645 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: 0.1783 S13: 0.0901 REMARK 3 S21: -0.2314 S22: 0.0271 S23: 0.0837 REMARK 3 S31: 0.1133 S32: -0.0998 S33: -0.1416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3R9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 36.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.84100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES BUFFER, 30% PEG-4000, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 77.00300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.78550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 77.00300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.78550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 77.00300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.78550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 77.00300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.78550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.87600 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.87600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 312 REMARK 465 SER B -2 REMARK 465 HIS B 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 110 CB CYS A 110 SG -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 47 -4.26 -144.29 REMARK 500 ILE A 166 -50.82 -122.90 REMARK 500 LYS A 284 124.65 -36.64 REMARK 500 LYS A 288 50.82 73.71 REMARK 500 LYS A 288 53.88 71.25 REMARK 500 ALA B 0 51.41 -114.68 REMARK 500 CYS B 110 58.85 -144.76 REMARK 500 ASP B 209 -147.20 -143.89 REMARK 500 ASP B 250 2.72 -68.55 REMARK 500 SER B 251 -20.11 93.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90832 RELATED DB: TARGETDB DBREF 3R9U A 1 312 UNP Q0PBZ1 Q0PBZ1_CAMJE 1 312 DBREF 3R9U B 1 312 UNP Q0PBZ1 Q0PBZ1_CAMJE 1 312 SEQADV 3R9U SER A -2 UNP Q0PBZ1 EXPRESSION TAG SEQADV 3R9U ASN A -1 UNP Q0PBZ1 EXPRESSION TAG SEQADV 3R9U ALA A 0 UNP Q0PBZ1 EXPRESSION TAG SEQADV 3R9U SER B -2 UNP Q0PBZ1 EXPRESSION TAG SEQADV 3R9U ASN B -1 UNP Q0PBZ1 EXPRESSION TAG SEQADV 3R9U ALA B 0 UNP Q0PBZ1 EXPRESSION TAG SEQRES 1 A 315 SER ASN ALA MSE LEU ASP VAL ALA ILE ILE GLY GLY GLY SEQRES 2 A 315 PRO ALA GLY LEU SER ALA GLY LEU TYR ALA THR ARG GLY SEQRES 3 A 315 GLY LEU LYS ASN VAL VAL MSE PHE GLU LYS GLY MSE PRO SEQRES 4 A 315 GLY GLY GLN ILE THR SER SER SER GLU ILE GLU ASN TYR SEQRES 5 A 315 PRO GLY VAL ALA GLN VAL MSE ASP GLY ILE SER PHE MSE SEQRES 6 A 315 ALA PRO TRP SER GLU GLN CYS MSE ARG PHE GLY LEU LYS SEQRES 7 A 315 HIS GLU MSE VAL GLY VAL GLU GLN ILE LEU LYS ASN SER SEQRES 8 A 315 ASP GLY SER PHE THR ILE LYS LEU GLU GLY GLY LYS THR SEQRES 9 A 315 GLU LEU ALA LYS ALA VAL ILE VAL CYS THR GLY SER ALA SEQRES 10 A 315 PRO LYS LYS ALA GLY PHE LYS GLY GLU ASP GLU PHE PHE SEQRES 11 A 315 GLY LYS GLY VAL SER THR CYS ALA THR CYS ASP GLY PHE SEQRES 12 A 315 PHE TYR LYS ASN LYS GLU VAL ALA VAL LEU GLY GLY GLY SEQRES 13 A 315 ASP THR ALA LEU GLU GLU ALA LEU TYR LEU ALA ASN ILE SEQRES 14 A 315 CYS SER LYS ILE TYR LEU ILE HIS ARG ARG ASP GLU PHE SEQRES 15 A 315 ARG ALA ALA PRO SER THR VAL GLU LYS VAL LYS LYS ASN SEQRES 16 A 315 GLU LYS ILE GLU LEU ILE THR SER ALA SER VAL ASP GLU SEQRES 17 A 315 VAL TYR GLY ASP LYS MSE GLY VAL ALA GLY VAL LYS VAL SEQRES 18 A 315 LYS LEU LYS ASP GLY SER ILE ARG ASP LEU ASN VAL PRO SEQRES 19 A 315 GLY ILE PHE THR PHE VAL GLY LEU ASN VAL ARG ASN GLU SEQRES 20 A 315 ILE LEU LYS GLN ASP ASP SER LYS PHE LEU CYS ASN MSE SEQRES 21 A 315 GLU GLU GLY GLY GLN VAL SER VAL ASP LEU LYS MSE GLN SEQRES 22 A 315 THR SER VAL ALA GLY LEU PHE ALA ALA GLY ASP LEU ARG SEQRES 23 A 315 LYS ASP ALA PRO LYS GLN VAL ILE CYS ALA ALA GLY ASP SEQRES 24 A 315 GLY ALA VAL ALA ALA LEU SER ALA MSE ALA TYR ILE GLU SEQRES 25 A 315 SER LEU HIS SEQRES 1 B 315 SER ASN ALA MSE LEU ASP VAL ALA ILE ILE GLY GLY GLY SEQRES 2 B 315 PRO ALA GLY LEU SER ALA GLY LEU TYR ALA THR ARG GLY SEQRES 3 B 315 GLY LEU LYS ASN VAL VAL MSE PHE GLU LYS GLY MSE PRO SEQRES 4 B 315 GLY GLY GLN ILE THR SER SER SER GLU ILE GLU ASN TYR SEQRES 5 B 315 PRO GLY VAL ALA GLN VAL MSE ASP GLY ILE SER PHE MSE SEQRES 6 B 315 ALA PRO TRP SER GLU GLN CYS MSE ARG PHE GLY LEU LYS SEQRES 7 B 315 HIS GLU MSE VAL GLY VAL GLU GLN ILE LEU LYS ASN SER SEQRES 8 B 315 ASP GLY SER PHE THR ILE LYS LEU GLU GLY GLY LYS THR SEQRES 9 B 315 GLU LEU ALA LYS ALA VAL ILE VAL CYS THR GLY SER ALA SEQRES 10 B 315 PRO LYS LYS ALA GLY PHE LYS GLY GLU ASP GLU PHE PHE SEQRES 11 B 315 GLY LYS GLY VAL SER THR CYS ALA THR CYS ASP GLY PHE SEQRES 12 B 315 PHE TYR LYS ASN LYS GLU VAL ALA VAL LEU GLY GLY GLY SEQRES 13 B 315 ASP THR ALA LEU GLU GLU ALA LEU TYR LEU ALA ASN ILE SEQRES 14 B 315 CYS SER LYS ILE TYR LEU ILE HIS ARG ARG ASP GLU PHE SEQRES 15 B 315 ARG ALA ALA PRO SER THR VAL GLU LYS VAL LYS LYS ASN SEQRES 16 B 315 GLU LYS ILE GLU LEU ILE THR SER ALA SER VAL ASP GLU SEQRES 17 B 315 VAL TYR GLY ASP LYS MSE GLY VAL ALA GLY VAL LYS VAL SEQRES 18 B 315 LYS LEU LYS ASP GLY SER ILE ARG ASP LEU ASN VAL PRO SEQRES 19 B 315 GLY ILE PHE THR PHE VAL GLY LEU ASN VAL ARG ASN GLU SEQRES 20 B 315 ILE LEU LYS GLN ASP ASP SER LYS PHE LEU CYS ASN MSE SEQRES 21 B 315 GLU GLU GLY GLY GLN VAL SER VAL ASP LEU LYS MSE GLN SEQRES 22 B 315 THR SER VAL ALA GLY LEU PHE ALA ALA GLY ASP LEU ARG SEQRES 23 B 315 LYS ASP ALA PRO LYS GLN VAL ILE CYS ALA ALA GLY ASP SEQRES 24 B 315 GLY ALA VAL ALA ALA LEU SER ALA MSE ALA TYR ILE GLU SEQRES 25 B 315 SER LEU HIS MODRES 3R9U MSE A 1 MET SELENOMETHIONINE MODRES 3R9U MSE A 30 MET SELENOMETHIONINE MODRES 3R9U MSE A 35 MET SELENOMETHIONINE MODRES 3R9U MSE A 56 MET SELENOMETHIONINE MODRES 3R9U MSE A 62 MET SELENOMETHIONINE MODRES 3R9U MSE A 70 MET SELENOMETHIONINE MODRES 3R9U MSE A 78 MET SELENOMETHIONINE MODRES 3R9U MSE A 211 MET SELENOMETHIONINE MODRES 3R9U MSE A 257 MET SELENOMETHIONINE MODRES 3R9U MSE A 269 MET SELENOMETHIONINE MODRES 3R9U MSE A 305 MET SELENOMETHIONINE MODRES 3R9U MSE B 1 MET SELENOMETHIONINE MODRES 3R9U MSE B 30 MET SELENOMETHIONINE MODRES 3R9U MSE B 35 MET SELENOMETHIONINE MODRES 3R9U MSE B 56 MET SELENOMETHIONINE MODRES 3R9U MSE B 62 MET SELENOMETHIONINE MODRES 3R9U MSE B 70 MET SELENOMETHIONINE MODRES 3R9U MSE B 78 MET SELENOMETHIONINE MODRES 3R9U MSE B 211 MET SELENOMETHIONINE MODRES 3R9U MSE B 257 MET SELENOMETHIONINE MODRES 3R9U MSE B 269 MET SELENOMETHIONINE MODRES 3R9U MSE B 305 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 30 8 HET MSE A 35 8 HET MSE A 56 8 HET MSE A 62 8 HET MSE A 70 8 HET MSE A 78 8 HET MSE A 211 8 HET MSE A 257 8 HET MSE A 269 8 HET MSE A 305 8 HET MSE B 1 8 HET MSE B 30 8 HET MSE B 35 8 HET MSE B 56 8 HET MSE B 62 8 HET MSE B 70 8 HET MSE B 78 8 HET MSE B 211 8 HET MSE B 257 8 HET MSE B 269 8 HET MSE B 305 8 HET FAD A 501 53 HET EDO A 601 4 HET FAD B 501 53 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 EDO C2 H6 O2 FORMUL 6 HOH *84(H2 O) HELIX 1 1 GLY A 10 GLY A 24 1 15 HELIX 2 2 GLY A 37 SER A 43 5 7 HELIX 3 3 ASP A 57 ALA A 63 1 7 HELIX 4 4 PRO A 64 MSE A 70 1 7 HELIX 5 5 CYS A 134 GLY A 139 1 6 HELIX 6 6 PHE A 140 LYS A 143 5 4 HELIX 7 7 GLY A 153 ASN A 165 1 13 HELIX 8 8 ALA A 182 ASN A 192 1 11 HELIX 9 9 ASN A 243 LYS A 247 5 5 HELIX 10 10 GLY A 280 ARG A 283 5 4 HELIX 11 11 GLN A 289 LEU A 311 1 23 HELIX 12 12 GLY B 10 GLY B 23 1 14 HELIX 13 13 GLY B 38 SER B 43 5 6 HELIX 14 14 ASP B 57 ALA B 63 1 7 HELIX 15 15 PRO B 64 MSE B 70 1 7 HELIX 16 16 CYS B 134 GLY B 139 1 6 HELIX 17 17 PHE B 140 LYS B 143 5 4 HELIX 18 18 GLY B 153 ALA B 164 1 12 HELIX 19 19 ALA B 182 ASN B 192 1 11 HELIX 20 20 ASN B 243 LYS B 247 5 5 HELIX 21 21 GLY B 280 ARG B 283 5 4 HELIX 22 22 GLN B 289 SER B 310 1 22 SHEET 1 A 6 LYS A 75 GLU A 77 0 SHEET 2 A 6 VAL A 28 PHE A 31 1 N MSE A 30 O LYS A 75 SHEET 3 A 6 LEU A 2 ILE A 7 1 N ILE A 6 O VAL A 29 SHEET 4 A 6 THR A 101 VAL A 109 1 O ILE A 108 N ILE A 7 SHEET 5 A 6 PHE A 92 LEU A 96 -1 N ILE A 94 O GLU A 102 SHEET 6 A 6 VAL A 81 LYS A 86 -1 N GLN A 83 O LYS A 95 SHEET 1 B 5 LYS A 75 GLU A 77 0 SHEET 2 B 5 VAL A 28 PHE A 31 1 N MSE A 30 O LYS A 75 SHEET 3 B 5 LEU A 2 ILE A 7 1 N ILE A 6 O VAL A 29 SHEET 4 B 5 THR A 101 VAL A 109 1 O ILE A 108 N ILE A 7 SHEET 5 B 5 LEU A 276 ALA A 278 1 O PHE A 277 N VAL A 107 SHEET 1 C 2 SER A 113 PRO A 115 0 SHEET 2 C 2 LEU A 239 VAL A 241 -1 O ASN A 240 N ALA A 114 SHEET 1 D 5 VAL A 131 SER A 132 0 SHEET 2 D 5 ILE A 233 THR A 235 1 O THR A 235 N SER A 132 SHEET 3 D 5 GLU A 146 LEU A 150 1 N LEU A 150 O PHE A 234 SHEET 4 D 5 LYS A 169 ILE A 173 1 O ILE A 173 N VAL A 149 SHEET 5 D 5 ILE A 195 ILE A 198 1 O ILE A 198 N LEU A 172 SHEET 1 E 3 SER A 202 ASP A 209 0 SHEET 2 E 3 GLY A 212 LYS A 219 -1 O ALA A 214 N TYR A 207 SHEET 3 E 3 ILE A 225 LEU A 228 -1 O ARG A 226 N VAL A 218 SHEET 1 F 6 LYS B 75 GLU B 77 0 SHEET 2 F 6 VAL B 28 PHE B 31 1 N MSE B 30 O LYS B 75 SHEET 3 F 6 LEU B 2 ILE B 7 1 N ILE B 6 O VAL B 29 SHEET 4 F 6 THR B 101 VAL B 109 1 O ILE B 108 N ILE B 7 SHEET 5 F 6 PHE B 92 LEU B 96 -1 N ILE B 94 O GLU B 102 SHEET 6 F 6 VAL B 81 LYS B 86 -1 N GLU B 82 O LYS B 95 SHEET 1 G 5 LYS B 75 GLU B 77 0 SHEET 2 G 5 VAL B 28 PHE B 31 1 N MSE B 30 O LYS B 75 SHEET 3 G 5 LEU B 2 ILE B 7 1 N ILE B 6 O VAL B 29 SHEET 4 G 5 THR B 101 VAL B 109 1 O ILE B 108 N ILE B 7 SHEET 5 G 5 LEU B 276 ALA B 278 1 O PHE B 277 N VAL B 107 SHEET 1 H 2 SER B 113 PRO B 115 0 SHEET 2 H 2 LEU B 239 VAL B 241 -1 O ASN B 240 N ALA B 114 SHEET 1 I 5 VAL B 131 SER B 132 0 SHEET 2 I 5 ILE B 233 THR B 235 1 O ILE B 233 N SER B 132 SHEET 3 I 5 GLU B 146 LEU B 150 1 N LEU B 150 O PHE B 234 SHEET 4 I 5 LYS B 169 HIS B 174 1 O ILE B 173 N VAL B 149 SHEET 5 I 5 ILE B 195 THR B 199 1 O ILE B 198 N LEU B 172 SHEET 1 J 3 SER B 202 ASP B 209 0 SHEET 2 J 3 GLY B 212 LYS B 219 -1 O LYS B 219 N SER B 202 SHEET 3 J 3 ILE B 225 LEU B 228 -1 O ARG B 226 N VAL B 218 SSBOND 1 CYS A 134 CYS A 137 1555 1555 2.98 SSBOND 2 CYS B 134 CYS B 137 1555 1555 2.86 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LEU A 2 1555 1555 1.34 LINK C VAL A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N PHE A 31 1555 1555 1.34 LINK C GLY A 34 N MSE A 35 1555 1555 1.32 LINK C MSE A 35 N PRO A 36 1555 1555 1.34 LINK C VAL A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ASP A 57 1555 1555 1.33 LINK C PHE A 61 N MSE A 62 1555 1555 1.34 LINK C MSE A 62 N ALA A 63 1555 1555 1.34 LINK C CYS A 69 N MSE A 70 1555 1555 1.32 LINK C MSE A 70 N ARG A 71 1555 1555 1.33 LINK C GLU A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N VAL A 79 1555 1555 1.32 LINK C LYS A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N GLY A 212 1555 1555 1.33 LINK C ASN A 256 N MSE A 257 1555 1555 1.33 LINK C MSE A 257 N GLU A 258 1555 1555 1.34 LINK C LYS A 268 N MSE A 269 1555 1555 1.34 LINK C MSE A 269 N GLN A 270 1555 1555 1.34 LINK C ALA A 304 N MSE A 305 1555 1555 1.32 LINK C MSE A 305 N ALA A 306 1555 1555 1.35 LINK C ALA B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N LEU B 2 1555 1555 1.33 LINK C VAL B 29 N MSE B 30 1555 1555 1.32 LINK C MSE B 30 N PHE B 31 1555 1555 1.33 LINK C GLY B 34 N MSE B 35 1555 1555 1.32 LINK C MSE B 35 N PRO B 36 1555 1555 1.34 LINK C VAL B 55 N MSE B 56 1555 1555 1.34 LINK C MSE B 56 N ASP B 57 1555 1555 1.34 LINK C PHE B 61 N MSE B 62 1555 1555 1.34 LINK C MSE B 62 N ALA B 63 1555 1555 1.33 LINK C CYS B 69 N MSE B 70 1555 1555 1.32 LINK C MSE B 70 N ARG B 71 1555 1555 1.34 LINK C GLU B 77 N MSE B 78 1555 1555 1.33 LINK C MSE B 78 N VAL B 79 1555 1555 1.33 LINK C LYS B 210 N MSE B 211 1555 1555 1.33 LINK C MSE B 211 N GLY B 212 1555 1555 1.33 LINK C ASN B 256 N MSE B 257 1555 1555 1.31 LINK C MSE B 257 N GLU B 258 1555 1555 1.33 LINK C LYS B 268 N MSE B 269 1555 1555 1.33 LINK C MSE B 269 N GLN B 270 1555 1555 1.34 LINK C ALA B 304 N MSE B 305 1555 1555 1.33 LINK C MSE B 305 N ALA B 306 1555 1555 1.33 SITE 1 AC1 32 GLY A 8 GLY A 9 GLY A 10 PRO A 11 SITE 2 AC1 32 ALA A 12 PHE A 31 GLU A 32 LYS A 33 SITE 3 AC1 32 GLY A 38 GLN A 39 ILE A 40 SER A 43 SITE 4 AC1 32 ILE A 46 ASN A 48 VAL A 79 GLY A 80 SITE 5 AC1 32 VAL A 81 CYS A 110 THR A 111 GLY A 112 SITE 6 AC1 32 SER A 113 THR A 155 ARG A 242 GLY A 280 SITE 7 AC1 32 ASP A 281 LYS A 288 GLN A 289 VAL A 290 SITE 8 AC1 32 ALA A 293 HOH A 323 HOH A 325 HOH A 328 SITE 1 AC2 28 GLY B 8 GLY B 10 PRO B 11 ALA B 12 SITE 2 AC2 28 TYR B 19 PHE B 31 GLU B 32 LYS B 33 SITE 3 AC2 28 GLY B 38 GLN B 39 ILE B 40 ASN B 48 SITE 4 AC2 28 VAL B 79 VAL B 81 CYS B 110 THR B 111 SITE 5 AC2 28 GLY B 112 SER B 113 THR B 155 ARG B 242 SITE 6 AC2 28 ILE B 245 GLY B 280 ASP B 281 LYS B 288 SITE 7 AC2 28 GLN B 289 VAL B 290 HOH B 314 HOH B 320 SITE 1 AC3 1 GLN A 270 CRYST1 154.006 163.571 66.876 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006493 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014953 0.00000