data_3R9Y # _entry.id 3R9Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3R9Y pdb_00003r9y 10.2210/pdb3r9y/pdb RCSB RCSB064674 ? ? WWPDB D_1000064674 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3R9Z 'StWhy2 K67A (form II)' unspecified PDB 3RA0 'StWhy2 K67A-dT32 complex' unspecified PDB 3N1H 'Same protein without K67A mutation' unspecified PDB 3N1I 'Same protein without K67A mutation' unspecified PDB 3N1J 'Same protein without K67A mutation' unspecified PDB 3N1K 'Same protein without K67A mutation' unspecified PDB 3N1L 'Same protein without K67A mutation' unspecified PDB 1L3A 'Paralogue protein' unspecified # _pdbx_database_status.entry_id 3R9Y _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-26 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cappadocia, L.' 1 'Brisson, N.' 2 'Sygusch, J.' 3 # _citation.id primary _citation.title ;A conserved lysine residue of plant Whirly proteins is necessary for higher order protein assembly and protection against DNA damage. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 258 _citation.page_last 269 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21911368 _citation.pdbx_database_id_DOI 10.1093/nar/gkr740 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cappadocia, L.' 1 ? primary 'Parent, J.S.' 2 ? primary 'Zampini, E.' 3 ? primary 'Lepage, E.' 4 ? primary 'Sygusch, J.' 5 ? primary 'Brisson, N.' 6 ? # _cell.length_a 168.365 _cell.length_b 168.365 _cell.length_c 168.365 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3R9Y _cell.pdbx_unique_axis ? _cell.Z_PDB 96 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'F 4 3 2' _symmetry.entry_id 3R9Y _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 209 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Why2 protein' 19942.613 1 ? K67A 'Residues 48-216' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ASP n 1 4 ALA n 1 5 GLY n 1 6 LYS n 1 7 ARG n 1 8 GLU n 1 9 GLY n 1 10 ARG n 1 11 VAL n 1 12 PHE n 1 13 ALA n 1 14 PRO n 1 15 TYR n 1 16 SER n 1 17 VAL n 1 18 PHE n 1 19 LYS n 1 20 GLY n 1 21 ALA n 1 22 ALA n 1 23 ALA n 1 24 LEU n 1 25 SER n 1 26 ALA n 1 27 GLU n 1 28 PRO n 1 29 ARG n 1 30 LEU n 1 31 PRO n 1 32 THR n 1 33 PHE n 1 34 ASN n 1 35 ARG n 1 36 LEU n 1 37 ASP n 1 38 SER n 1 39 GLY n 1 40 GLY n 1 41 VAL n 1 42 LYS n 1 43 LEU n 1 44 ASN n 1 45 ARG n 1 46 ARG n 1 47 GLY n 1 48 VAL n 1 49 ILE n 1 50 MET n 1 51 LEU n 1 52 THR n 1 53 PHE n 1 54 TRP n 1 55 PRO n 1 56 SER n 1 57 VAL n 1 58 GLY n 1 59 GLU n 1 60 ARG n 1 61 LYS n 1 62 TYR n 1 63 ASP n 1 64 TRP n 1 65 GLU n 1 66 LYS n 1 67 ARG n 1 68 GLN n 1 69 LEU n 1 70 PHE n 1 71 ALA n 1 72 LEU n 1 73 SER n 1 74 ALA n 1 75 THR n 1 76 GLU n 1 77 VAL n 1 78 GLY n 1 79 SER n 1 80 LEU n 1 81 ILE n 1 82 SER n 1 83 MET n 1 84 GLY n 1 85 THR n 1 86 ARG n 1 87 ASP n 1 88 SER n 1 89 SER n 1 90 GLU n 1 91 PHE n 1 92 PHE n 1 93 HIS n 1 94 ASP n 1 95 PRO n 1 96 SER n 1 97 MET n 1 98 LEU n 1 99 SER n 1 100 SER n 1 101 ASN n 1 102 ALA n 1 103 GLY n 1 104 GLN n 1 105 VAL n 1 106 ARG n 1 107 LYS n 1 108 SER n 1 109 LEU n 1 110 SER n 1 111 ILE n 1 112 LYS n 1 113 PRO n 1 114 ASN n 1 115 ALA n 1 116 ASP n 1 117 GLY n 1 118 SER n 1 119 GLY n 1 120 TYR n 1 121 PHE n 1 122 ILE n 1 123 SER n 1 124 LEU n 1 125 SER n 1 126 VAL n 1 127 VAL n 1 128 ASN n 1 129 ASN n 1 130 ASN n 1 131 LEU n 1 132 LYS n 1 133 THR n 1 134 ASN n 1 135 ASP n 1 136 ARG n 1 137 PHE n 1 138 THR n 1 139 VAL n 1 140 PRO n 1 141 VAL n 1 142 THR n 1 143 THR n 1 144 ALA n 1 145 GLU n 1 146 PHE n 1 147 ALA n 1 148 VAL n 1 149 MET n 1 150 ARG n 1 151 THR n 1 152 ALA n 1 153 PHE n 1 154 SER n 1 155 PHE n 1 156 ALA n 1 157 LEU n 1 158 PRO n 1 159 HIS n 1 160 ILE n 1 161 MET n 1 162 GLY n 1 163 TRP n 1 164 ASP n 1 165 ARG n 1 166 PHE n 1 167 THR n 1 168 ASN n 1 169 ARG n 1 170 PRO n 1 171 LEU n 1 172 GLU n 1 173 HIS n 1 174 HIS n 1 175 HIS n 1 176 HIS n 1 177 HIS n 1 178 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name potato _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene StWhy2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain kennebec _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Solanum tuberosum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4113 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D9J034_SOLTU _struct_ref.pdbx_db_accession D9J034 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLI SMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIM GWDRFTNRP ; _struct_ref.pdbx_align_begin 48 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3R9Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D9J034 _struct_ref_seq.db_align_beg 48 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 216 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 48 _struct_ref_seq.pdbx_auth_seq_align_end 216 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3R9Y MET A 1 ? UNP D9J034 ? ? 'initiating methionine' 47 1 1 3R9Y ALA A 21 ? UNP D9J034 LYS 67 'engineered mutation' 67 2 1 3R9Y LEU A 171 ? UNP D9J034 ? ? 'expression tag' 217 3 1 3R9Y GLU A 172 ? UNP D9J034 ? ? 'expression tag' 218 4 1 3R9Y HIS A 173 ? UNP D9J034 ? ? 'expression tag' 219 5 1 3R9Y HIS A 174 ? UNP D9J034 ? ? 'expression tag' 220 6 1 3R9Y HIS A 175 ? UNP D9J034 ? ? 'expression tag' 221 7 1 3R9Y HIS A 176 ? UNP D9J034 ? ? 'expression tag' 222 8 1 3R9Y HIS A 177 ? UNP D9J034 ? ? 'expression tag' 223 9 1 3R9Y HIS A 178 ? UNP D9J034 ? ? 'expression tag' 224 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3R9Y _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '100mM MOPS pH7.0, 24% PEG1000, 100mM NH4H2PO4, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.pdbx_collection_date 2010-08-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site CLSI _diffrn_source.pdbx_synchrotron_beamline 08ID-1 # _reflns.entry_id 3R9Y _reflns.B_iso_Wilson_estimate 56.340 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.35 _reflns.d_resolution_low 50 _reflns.number_all 9014 _reflns.number_obs 9012 _reflns.percent_possible_obs 99.98 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_sigmaI 31.0 _reflns.pdbx_redundancy 22.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_obs _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.35 2.48 ? 100.0 ? ? 1.025 18.6 ? ? ? ? ? 1 1 7.43 50 ? 99.5 ? ? 0.018 18.7 ? ? ? ? ? 2 1 # _refine.entry_id 3R9Y _refine.ls_d_res_high 2.3500 _refine.ls_d_res_low 38.6260 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.7700 _refine.ls_number_reflns_obs 8721 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2263 _refine.ls_R_factor_R_work 0.2236 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2664 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.9500 _refine.ls_number_reflns_R_free 519 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 60.8141 _refine.solvent_model_param_bsol 46.0750 _refine.solvent_model_param_ksol 0.3170 _refine.pdbx_isotropic_thermal_model Isotropic _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] -0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.3000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.0600 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3N1H' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7776 _refine.B_iso_max 109.830 _refine.B_iso_min 32.940 _refine.occupancy_max 1.000 _refine.occupancy_min 0.800 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1262 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 1314 _refine_hist.d_res_high 2.3500 _refine_hist.d_res_low 38.6260 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1302 0.005 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1762 0.894 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 189 0.062 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 227 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 470 14.731 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.3502 2.5867 4 92.0000 1883 . 0.2974 0.3660 . 120 . 2003 . . 'X-RAY DIFFRACTION' 2.5867 2.9609 4 96.0000 1993 . 0.2619 0.3657 . 128 . 2121 . . 'X-RAY DIFFRACTION' 2.9609 3.7299 4 99.0000 2074 . 0.2367 0.2594 . 127 . 2201 . . 'X-RAY DIFFRACTION' 3.7299 38.6308 4 100.0000 2252 . 0.2023 0.2409 . 144 . 2396 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3R9Y _struct.title 'Crystal Structure of StWhy2 K67A (form I)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R9Y _struct_keywords.text 'StWhy2, single-stranded DNA binding protein, Plant, Potato, Whirly, Mitochondria, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 63 ? ARG A 67 ? ASP A 109 ARG A 113 5 ? 5 HELX_P HELX_P2 2 SER A 73 ? SER A 82 ? SER A 119 SER A 128 1 ? 10 HELX_P HELX_P3 3 THR A 143 ? MET A 161 ? THR A 189 MET A 207 1 ? 19 HELX_P HELX_P4 4 GLY A 162 ? PHE A 166 ? GLY A 208 PHE A 212 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 15 ? PHE A 18 ? TYR A 61 PHE A 64 A 2 ALA A 22 ? ARG A 29 ? ALA A 68 ARG A 75 A 3 VAL A 48 ? PRO A 55 ? VAL A 94 PRO A 101 A 4 GLN A 68 ? LEU A 72 ? GLN A 114 LEU A 118 B 1 PHE A 33 ? ASN A 34 ? PHE A 79 ASN A 80 B 2 LYS A 42 ? LEU A 43 ? LYS A 88 LEU A 89 C 1 SER A 89 ? HIS A 93 ? SER A 135 HIS A 139 C 2 VAL A 105 ? PRO A 113 ? VAL A 151 PRO A 159 C 3 GLY A 119 ? ASN A 128 ? GLY A 165 ASN A 174 C 4 THR A 133 ? THR A 142 ? THR A 179 THR A 188 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 17 ? N VAL A 63 O LEU A 24 ? O LEU A 70 A 2 3 N ALA A 23 ? N ALA A 69 O TRP A 54 ? O TRP A 100 A 3 4 N PHE A 53 ? N PHE A 99 O GLN A 68 ? O GLN A 114 B 1 2 N ASN A 34 ? N ASN A 80 O LYS A 42 ? O LYS A 88 C 1 2 N HIS A 93 ? N HIS A 139 O LYS A 107 ? O LYS A 153 C 2 3 N ARG A 106 ? N ARG A 152 O VAL A 127 ? O VAL A 173 C 3 4 N VAL A 126 ? N VAL A 172 O ASP A 135 ? O ASP A 181 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 1 ? 3 'BINDING SITE FOR RESIDUE PO4 A 1' AC2 Software A PO4 2 ? 5 'BINDING SITE FOR RESIDUE PO4 A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ARG A 29 ? ARG A 75 . ? 1_555 ? 2 AC1 3 ARG A 45 ? ARG A 91 . ? 1_555 ? 3 AC1 3 ARG A 46 ? ARG A 92 . ? 1_555 ? 4 AC2 5 HOH D . ? HOH A 26 . ? 1_555 ? 5 AC2 5 LEU A 69 ? LEU A 115 . ? 1_555 ? 6 AC2 5 PHE A 70 ? PHE A 116 . ? 1_555 ? 7 AC2 5 ALA A 71 ? ALA A 117 . ? 1_555 ? 8 AC2 5 HIS A 93 ? HIS A 139 . ? 1_555 ? # _atom_sites.entry_id 3R9Y _atom_sites.fract_transf_matrix[1][1] 0.005939 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005939 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005939 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 47 ? ? ? A . n A 1 2 ALA 2 48 ? ? ? A . n A 1 3 ASP 3 49 ? ? ? A . n A 1 4 ALA 4 50 ? ? ? A . n A 1 5 GLY 5 51 ? ? ? A . n A 1 6 LYS 6 52 ? ? ? A . n A 1 7 ARG 7 53 ? ? ? A . n A 1 8 GLU 8 54 ? ? ? A . n A 1 9 GLY 9 55 55 GLY GLY A . n A 1 10 ARG 10 56 56 ARG ARG A . n A 1 11 VAL 11 57 57 VAL VAL A . n A 1 12 PHE 12 58 58 PHE PHE A . n A 1 13 ALA 13 59 59 ALA ALA A . n A 1 14 PRO 14 60 60 PRO PRO A . n A 1 15 TYR 15 61 61 TYR TYR A . n A 1 16 SER 16 62 62 SER SER A . n A 1 17 VAL 17 63 63 VAL VAL A . n A 1 18 PHE 18 64 64 PHE PHE A . n A 1 19 LYS 19 65 65 LYS LYS A . n A 1 20 GLY 20 66 66 GLY GLY A . n A 1 21 ALA 21 67 67 ALA ALA A . n A 1 22 ALA 22 68 68 ALA ALA A . n A 1 23 ALA 23 69 69 ALA ALA A . n A 1 24 LEU 24 70 70 LEU LEU A . n A 1 25 SER 25 71 71 SER SER A . n A 1 26 ALA 26 72 72 ALA ALA A . n A 1 27 GLU 27 73 73 GLU GLU A . n A 1 28 PRO 28 74 74 PRO PRO A . n A 1 29 ARG 29 75 75 ARG ARG A . n A 1 30 LEU 30 76 76 LEU LEU A . n A 1 31 PRO 31 77 77 PRO PRO A . n A 1 32 THR 32 78 78 THR THR A . n A 1 33 PHE 33 79 79 PHE PHE A . n A 1 34 ASN 34 80 80 ASN ASN A . n A 1 35 ARG 35 81 81 ARG ARG A . n A 1 36 LEU 36 82 82 LEU LEU A . n A 1 37 ASP 37 83 83 ASP ASP A . n A 1 38 SER 38 84 84 SER SER A . n A 1 39 GLY 39 85 85 GLY GLY A . n A 1 40 GLY 40 86 86 GLY GLY A . n A 1 41 VAL 41 87 87 VAL VAL A . n A 1 42 LYS 42 88 88 LYS LYS A . n A 1 43 LEU 43 89 89 LEU LEU A . n A 1 44 ASN 44 90 90 ASN ASN A . n A 1 45 ARG 45 91 91 ARG ARG A . n A 1 46 ARG 46 92 92 ARG ARG A . n A 1 47 GLY 47 93 93 GLY GLY A . n A 1 48 VAL 48 94 94 VAL VAL A . n A 1 49 ILE 49 95 95 ILE ILE A . n A 1 50 MET 50 96 96 MET MET A . n A 1 51 LEU 51 97 97 LEU LEU A . n A 1 52 THR 52 98 98 THR THR A . n A 1 53 PHE 53 99 99 PHE PHE A . n A 1 54 TRP 54 100 100 TRP TRP A . n A 1 55 PRO 55 101 101 PRO PRO A . n A 1 56 SER 56 102 102 SER SER A . n A 1 57 VAL 57 103 103 VAL VAL A . n A 1 58 GLY 58 104 104 GLY GLY A . n A 1 59 GLU 59 105 105 GLU GLU A . n A 1 60 ARG 60 106 106 ARG ARG A . n A 1 61 LYS 61 107 107 LYS LYS A . n A 1 62 TYR 62 108 108 TYR TYR A . n A 1 63 ASP 63 109 109 ASP ASP A . n A 1 64 TRP 64 110 110 TRP TRP A . n A 1 65 GLU 65 111 111 GLU GLU A . n A 1 66 LYS 66 112 112 LYS LYS A . n A 1 67 ARG 67 113 113 ARG ARG A . n A 1 68 GLN 68 114 114 GLN GLN A . n A 1 69 LEU 69 115 115 LEU LEU A . n A 1 70 PHE 70 116 116 PHE PHE A . n A 1 71 ALA 71 117 117 ALA ALA A . n A 1 72 LEU 72 118 118 LEU LEU A . n A 1 73 SER 73 119 119 SER SER A . n A 1 74 ALA 74 120 120 ALA ALA A . n A 1 75 THR 75 121 121 THR THR A . n A 1 76 GLU 76 122 122 GLU GLU A . n A 1 77 VAL 77 123 123 VAL VAL A . n A 1 78 GLY 78 124 124 GLY GLY A . n A 1 79 SER 79 125 125 SER SER A . n A 1 80 LEU 80 126 126 LEU LEU A . n A 1 81 ILE 81 127 127 ILE ILE A . n A 1 82 SER 82 128 128 SER SER A . n A 1 83 MET 83 129 129 MET MET A . n A 1 84 GLY 84 130 130 GLY GLY A . n A 1 85 THR 85 131 131 THR THR A . n A 1 86 ARG 86 132 132 ARG ARG A . n A 1 87 ASP 87 133 133 ASP ASP A . n A 1 88 SER 88 134 134 SER SER A . n A 1 89 SER 89 135 135 SER SER A . n A 1 90 GLU 90 136 136 GLU GLU A . n A 1 91 PHE 91 137 137 PHE PHE A . n A 1 92 PHE 92 138 138 PHE PHE A . n A 1 93 HIS 93 139 139 HIS HIS A . n A 1 94 ASP 94 140 140 ASP ASP A . n A 1 95 PRO 95 141 141 PRO PRO A . n A 1 96 SER 96 142 142 SER SER A . n A 1 97 MET 97 143 143 MET MET A . n A 1 98 LEU 98 144 144 LEU LEU A . n A 1 99 SER 99 145 145 SER SER A . n A 1 100 SER 100 146 146 SER SER A . n A 1 101 ASN 101 147 147 ASN ASN A . n A 1 102 ALA 102 148 148 ALA ALA A . n A 1 103 GLY 103 149 149 GLY GLY A . n A 1 104 GLN 104 150 150 GLN GLN A . n A 1 105 VAL 105 151 151 VAL VAL A . n A 1 106 ARG 106 152 152 ARG ARG A . n A 1 107 LYS 107 153 153 LYS LYS A . n A 1 108 SER 108 154 154 SER SER A . n A 1 109 LEU 109 155 155 LEU LEU A . n A 1 110 SER 110 156 156 SER SER A . n A 1 111 ILE 111 157 157 ILE ILE A . n A 1 112 LYS 112 158 158 LYS LYS A . n A 1 113 PRO 113 159 159 PRO PRO A . n A 1 114 ASN 114 160 160 ASN ASN A . n A 1 115 ALA 115 161 161 ALA ALA A . n A 1 116 ASP 116 162 162 ASP ASP A . n A 1 117 GLY 117 163 163 GLY GLY A . n A 1 118 SER 118 164 164 SER SER A . n A 1 119 GLY 119 165 165 GLY GLY A . n A 1 120 TYR 120 166 166 TYR TYR A . n A 1 121 PHE 121 167 167 PHE PHE A . n A 1 122 ILE 122 168 168 ILE ILE A . n A 1 123 SER 123 169 169 SER SER A . n A 1 124 LEU 124 170 170 LEU LEU A . n A 1 125 SER 125 171 171 SER SER A . n A 1 126 VAL 126 172 172 VAL VAL A . n A 1 127 VAL 127 173 173 VAL VAL A . n A 1 128 ASN 128 174 174 ASN ASN A . n A 1 129 ASN 129 175 175 ASN ASN A . n A 1 130 ASN 130 176 176 ASN ASN A . n A 1 131 LEU 131 177 177 LEU LEU A . n A 1 132 LYS 132 178 178 LYS LYS A . n A 1 133 THR 133 179 179 THR THR A . n A 1 134 ASN 134 180 180 ASN ASN A . n A 1 135 ASP 135 181 181 ASP ASP A . n A 1 136 ARG 136 182 182 ARG ARG A . n A 1 137 PHE 137 183 183 PHE PHE A . n A 1 138 THR 138 184 184 THR THR A . n A 1 139 VAL 139 185 185 VAL VAL A . n A 1 140 PRO 140 186 186 PRO PRO A . n A 1 141 VAL 141 187 187 VAL VAL A . n A 1 142 THR 142 188 188 THR THR A . n A 1 143 THR 143 189 189 THR THR A . n A 1 144 ALA 144 190 190 ALA ALA A . n A 1 145 GLU 145 191 191 GLU GLU A . n A 1 146 PHE 146 192 192 PHE PHE A . n A 1 147 ALA 147 193 193 ALA ALA A . n A 1 148 VAL 148 194 194 VAL VAL A . n A 1 149 MET 149 195 195 MET MET A . n A 1 150 ARG 150 196 196 ARG ARG A . n A 1 151 THR 151 197 197 THR THR A . n A 1 152 ALA 152 198 198 ALA ALA A . n A 1 153 PHE 153 199 199 PHE PHE A . n A 1 154 SER 154 200 200 SER SER A . n A 1 155 PHE 155 201 201 PHE PHE A . n A 1 156 ALA 156 202 202 ALA ALA A . n A 1 157 LEU 157 203 203 LEU LEU A . n A 1 158 PRO 158 204 204 PRO PRO A . n A 1 159 HIS 159 205 205 HIS HIS A . n A 1 160 ILE 160 206 206 ILE ILE A . n A 1 161 MET 161 207 207 MET MET A . n A 1 162 GLY 162 208 208 GLY GLY A . n A 1 163 TRP 163 209 209 TRP TRP A . n A 1 164 ASP 164 210 210 ASP ASP A . n A 1 165 ARG 165 211 211 ARG ARG A . n A 1 166 PHE 166 212 212 PHE PHE A . n A 1 167 THR 167 213 213 THR THR A . n A 1 168 ASN 168 214 214 ASN ASN A . n A 1 169 ARG 169 215 215 ARG ARG A . n A 1 170 PRO 170 216 ? ? ? A . n A 1 171 LEU 171 217 ? ? ? A . n A 1 172 GLU 172 218 ? ? ? A . n A 1 173 HIS 173 219 ? ? ? A . n A 1 174 HIS 174 220 ? ? ? A . n A 1 175 HIS 175 221 ? ? ? A . n A 1 176 HIS 176 222 ? ? ? A . n A 1 177 HIS 177 223 ? ? ? A . n A 1 178 HIS 178 224 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 1 1 PO4 PO4 A . C 2 PO4 1 2 2 PO4 PO4 A . D 3 HOH 1 3 3 HOH HOH A . D 3 HOH 2 4 4 HOH HOH A . D 3 HOH 3 5 5 HOH HOH A . D 3 HOH 4 6 6 HOH HOH A . D 3 HOH 5 7 7 HOH HOH A . D 3 HOH 6 8 8 HOH HOH A . D 3 HOH 7 9 9 HOH HOH A . D 3 HOH 8 10 10 HOH HOH A . D 3 HOH 9 11 11 HOH HOH A . D 3 HOH 10 12 12 HOH HOH A . D 3 HOH 11 13 13 HOH HOH A . D 3 HOH 12 14 14 HOH HOH A . D 3 HOH 13 15 15 HOH HOH A . D 3 HOH 14 16 16 HOH HOH A . D 3 HOH 15 17 17 HOH HOH A . D 3 HOH 16 18 18 HOH HOH A . D 3 HOH 17 19 19 HOH HOH A . D 3 HOH 18 20 20 HOH HOH A . D 3 HOH 19 21 21 HOH HOH A . D 3 HOH 20 22 22 HOH HOH A . D 3 HOH 21 23 23 HOH HOH A . D 3 HOH 22 24 24 HOH HOH A . D 3 HOH 23 25 25 HOH HOH A . D 3 HOH 24 26 26 HOH HOH A . D 3 HOH 25 27 27 HOH HOH A . D 3 HOH 26 28 28 HOH HOH A . D 3 HOH 27 29 29 HOH HOH A . D 3 HOH 28 30 30 HOH HOH A . D 3 HOH 29 31 31 HOH HOH A . D 3 HOH 30 32 32 HOH HOH A . D 3 HOH 31 33 33 HOH HOH A . D 3 HOH 32 34 34 HOH HOH A . D 3 HOH 33 35 35 HOH HOH A . D 3 HOH 34 36 36 HOH HOH A . D 3 HOH 35 37 37 HOH HOH A . D 3 HOH 36 38 38 HOH HOH A . D 3 HOH 37 39 39 HOH HOH A . D 3 HOH 38 40 40 HOH HOH A . D 3 HOH 39 41 41 HOH HOH A . D 3 HOH 40 42 42 HOH HOH A . D 3 HOH 41 225 1 HOH HOH A . D 3 HOH 42 226 2 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA 24-meric 24 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B,C,D 2 1,5,2,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,3,23,4,24 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10340 ? 1 MORE -122 ? 1 'SSA (A^2)' 31230 ? 2 'ABSA (A^2)' 85690 ? 2 MORE -735 ? 2 'SSA (A^2)' 163740 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 168.3650000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -168.3650000000 3 'crystal symmetry operation' 21_655 z+1,y,-x 0.0000000000 0.0000000000 1.0000000000 168.3650000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 23_554 -z,y,x-1 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -168.3650000000 5 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 168.3650000000 0.0000000000 -1.0000000000 0.0000000000 168.3650000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 4_564 x,-y+1,-z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 168.3650000000 0.0000000000 0.0000000000 -1.0000000000 -168.3650000000 7 'crystal symmetry operation' 5_654 z+1,x,y-1 0.0000000000 0.0000000000 1.0000000000 168.3650000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -168.3650000000 8 'crystal symmetry operation' 6_665 z+1,-x+1,-y 0.0000000000 0.0000000000 1.0000000000 168.3650000000 -1.0000000000 0.0000000000 0.0000000000 168.3650000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 9 'crystal symmetry operation' 7_564 -z,-x+1,y-1 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 168.3650000000 0.0000000000 1.0000000000 0.0000000000 -168.3650000000 10 'crystal symmetry operation' 8_555 -z,x,-y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 11 'crystal symmetry operation' 9_564 y,z+1,x-1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 168.3650000000 1.0000000000 0.0000000000 0.0000000000 -168.3650000000 12 'crystal symmetry operation' 10_665 -y+1,z+1,-x 0.0000000000 -1.0000000000 0.0000000000 168.3650000000 0.0000000000 0.0000000000 1.0000000000 168.3650000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 13 'crystal symmetry operation' 11_555 y,-z,-x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 14 'crystal symmetry operation' 12_654 -y+1,-z,x-1 0.0000000000 -1.0000000000 0.0000000000 168.3650000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -168.3650000000 15 'crystal symmetry operation' 13_554 y,x,-z-1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -168.3650000000 16 'crystal symmetry operation' 14_664 -y+1,-x+1,-z-1 0.0000000000 -1.0000000000 0.0000000000 168.3650000000 -1.0000000000 0.0000000000 0.0000000000 168.3650000000 0.0000000000 0.0000000000 -1.0000000000 -168.3650000000 17 'crystal symmetry operation' 15_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 168.3650000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 18 'crystal symmetry operation' 16_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 168.3650000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 19 'crystal symmetry operation' 17_565 x,z+1,-y 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 168.3650000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 20 'crystal symmetry operation' 18_664 -x+1,z+1,y-1 -1.0000000000 0.0000000000 0.0000000000 168.3650000000 0.0000000000 0.0000000000 1.0000000000 168.3650000000 0.0000000000 1.0000000000 0.0000000000 -168.3650000000 21 'crystal symmetry operation' 19_655 -x+1,-z,-y -1.0000000000 0.0000000000 0.0000000000 168.3650000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 22 'crystal symmetry operation' 20_554 x,-z,y-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -168.3650000000 23 'crystal symmetry operation' 22_664 z+1,-y+1,x-1 0.0000000000 0.0000000000 1.0000000000 168.3650000000 0.0000000000 -1.0000000000 0.0000000000 168.3650000000 1.0000000000 0.0000000000 0.0000000000 -168.3650000000 24 'crystal symmetry operation' 24_565 -z,-y+1,-x 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 168.3650000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-28 2 'Structure model' 1 1 2012-01-11 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 XDS . ? ? ? ? 'data scaling' ? ? ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 SCALA . ? ? ? ? 'data scaling' ? ? ? 6 PHENIX . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 59 ? ? -157.18 58.33 2 1 ASN A 90 ? ? -118.63 -87.00 3 1 VAL A 103 ? ? -98.07 -76.60 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 47 ? A MET 1 2 1 Y 1 A ALA 48 ? A ALA 2 3 1 Y 1 A ASP 49 ? A ASP 3 4 1 Y 1 A ALA 50 ? A ALA 4 5 1 Y 1 A GLY 51 ? A GLY 5 6 1 Y 1 A LYS 52 ? A LYS 6 7 1 Y 1 A ARG 53 ? A ARG 7 8 1 Y 1 A GLU 54 ? A GLU 8 9 1 Y 1 A PRO 216 ? A PRO 170 10 1 Y 1 A LEU 217 ? A LEU 171 11 1 Y 1 A GLU 218 ? A GLU 172 12 1 Y 1 A HIS 219 ? A HIS 173 13 1 Y 1 A HIS 220 ? A HIS 174 14 1 Y 1 A HIS 221 ? A HIS 175 15 1 Y 1 A HIS 222 ? A HIS 176 16 1 Y 1 A HIS 223 ? A HIS 177 17 1 Y 1 A HIS 224 ? A HIS 178 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PO4 P P N N 259 PO4 O1 O N N 260 PO4 O2 O N N 261 PO4 O3 O N N 262 PO4 O4 O N N 263 PRO N N N N 264 PRO CA C N S 265 PRO C C N N 266 PRO O O N N 267 PRO CB C N N 268 PRO CG C N N 269 PRO CD C N N 270 PRO OXT O N N 271 PRO H H N N 272 PRO HA H N N 273 PRO HB2 H N N 274 PRO HB3 H N N 275 PRO HG2 H N N 276 PRO HG3 H N N 277 PRO HD2 H N N 278 PRO HD3 H N N 279 PRO HXT H N N 280 SER N N N N 281 SER CA C N S 282 SER C C N N 283 SER O O N N 284 SER CB C N N 285 SER OG O N N 286 SER OXT O N N 287 SER H H N N 288 SER H2 H N N 289 SER HA H N N 290 SER HB2 H N N 291 SER HB3 H N N 292 SER HG H N N 293 SER HXT H N N 294 THR N N N N 295 THR CA C N S 296 THR C C N N 297 THR O O N N 298 THR CB C N R 299 THR OG1 O N N 300 THR CG2 C N N 301 THR OXT O N N 302 THR H H N N 303 THR H2 H N N 304 THR HA H N N 305 THR HB H N N 306 THR HG1 H N N 307 THR HG21 H N N 308 THR HG22 H N N 309 THR HG23 H N N 310 THR HXT H N N 311 TRP N N N N 312 TRP CA C N S 313 TRP C C N N 314 TRP O O N N 315 TRP CB C N N 316 TRP CG C Y N 317 TRP CD1 C Y N 318 TRP CD2 C Y N 319 TRP NE1 N Y N 320 TRP CE2 C Y N 321 TRP CE3 C Y N 322 TRP CZ2 C Y N 323 TRP CZ3 C Y N 324 TRP CH2 C Y N 325 TRP OXT O N N 326 TRP H H N N 327 TRP H2 H N N 328 TRP HA H N N 329 TRP HB2 H N N 330 TRP HB3 H N N 331 TRP HD1 H N N 332 TRP HE1 H N N 333 TRP HE3 H N N 334 TRP HZ2 H N N 335 TRP HZ3 H N N 336 TRP HH2 H N N 337 TRP HXT H N N 338 TYR N N N N 339 TYR CA C N S 340 TYR C C N N 341 TYR O O N N 342 TYR CB C N N 343 TYR CG C Y N 344 TYR CD1 C Y N 345 TYR CD2 C Y N 346 TYR CE1 C Y N 347 TYR CE2 C Y N 348 TYR CZ C Y N 349 TYR OH O N N 350 TYR OXT O N N 351 TYR H H N N 352 TYR H2 H N N 353 TYR HA H N N 354 TYR HB2 H N N 355 TYR HB3 H N N 356 TYR HD1 H N N 357 TYR HD2 H N N 358 TYR HE1 H N N 359 TYR HE2 H N N 360 TYR HH H N N 361 TYR HXT H N N 362 VAL N N N N 363 VAL CA C N S 364 VAL C C N N 365 VAL O O N N 366 VAL CB C N N 367 VAL CG1 C N N 368 VAL CG2 C N N 369 VAL OXT O N N 370 VAL H H N N 371 VAL H2 H N N 372 VAL HA H N N 373 VAL HB H N N 374 VAL HG11 H N N 375 VAL HG12 H N N 376 VAL HG13 H N N 377 VAL HG21 H N N 378 VAL HG22 H N N 379 VAL HG23 H N N 380 VAL HXT H N N 381 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PO4 P O1 doub N N 247 PO4 P O2 sing N N 248 PO4 P O3 sing N N 249 PO4 P O4 sing N N 250 PRO N CA sing N N 251 PRO N CD sing N N 252 PRO N H sing N N 253 PRO CA C sing N N 254 PRO CA CB sing N N 255 PRO CA HA sing N N 256 PRO C O doub N N 257 PRO C OXT sing N N 258 PRO CB CG sing N N 259 PRO CB HB2 sing N N 260 PRO CB HB3 sing N N 261 PRO CG CD sing N N 262 PRO CG HG2 sing N N 263 PRO CG HG3 sing N N 264 PRO CD HD2 sing N N 265 PRO CD HD3 sing N N 266 PRO OXT HXT sing N N 267 SER N CA sing N N 268 SER N H sing N N 269 SER N H2 sing N N 270 SER CA C sing N N 271 SER CA CB sing N N 272 SER CA HA sing N N 273 SER C O doub N N 274 SER C OXT sing N N 275 SER CB OG sing N N 276 SER CB HB2 sing N N 277 SER CB HB3 sing N N 278 SER OG HG sing N N 279 SER OXT HXT sing N N 280 THR N CA sing N N 281 THR N H sing N N 282 THR N H2 sing N N 283 THR CA C sing N N 284 THR CA CB sing N N 285 THR CA HA sing N N 286 THR C O doub N N 287 THR C OXT sing N N 288 THR CB OG1 sing N N 289 THR CB CG2 sing N N 290 THR CB HB sing N N 291 THR OG1 HG1 sing N N 292 THR CG2 HG21 sing N N 293 THR CG2 HG22 sing N N 294 THR CG2 HG23 sing N N 295 THR OXT HXT sing N N 296 TRP N CA sing N N 297 TRP N H sing N N 298 TRP N H2 sing N N 299 TRP CA C sing N N 300 TRP CA CB sing N N 301 TRP CA HA sing N N 302 TRP C O doub N N 303 TRP C OXT sing N N 304 TRP CB CG sing N N 305 TRP CB HB2 sing N N 306 TRP CB HB3 sing N N 307 TRP CG CD1 doub Y N 308 TRP CG CD2 sing Y N 309 TRP CD1 NE1 sing Y N 310 TRP CD1 HD1 sing N N 311 TRP CD2 CE2 doub Y N 312 TRP CD2 CE3 sing Y N 313 TRP NE1 CE2 sing Y N 314 TRP NE1 HE1 sing N N 315 TRP CE2 CZ2 sing Y N 316 TRP CE3 CZ3 doub Y N 317 TRP CE3 HE3 sing N N 318 TRP CZ2 CH2 doub Y N 319 TRP CZ2 HZ2 sing N N 320 TRP CZ3 CH2 sing Y N 321 TRP CZ3 HZ3 sing N N 322 TRP CH2 HH2 sing N N 323 TRP OXT HXT sing N N 324 TYR N CA sing N N 325 TYR N H sing N N 326 TYR N H2 sing N N 327 TYR CA C sing N N 328 TYR CA CB sing N N 329 TYR CA HA sing N N 330 TYR C O doub N N 331 TYR C OXT sing N N 332 TYR CB CG sing N N 333 TYR CB HB2 sing N N 334 TYR CB HB3 sing N N 335 TYR CG CD1 doub Y N 336 TYR CG CD2 sing Y N 337 TYR CD1 CE1 sing Y N 338 TYR CD1 HD1 sing N N 339 TYR CD2 CE2 doub Y N 340 TYR CD2 HD2 sing N N 341 TYR CE1 CZ doub Y N 342 TYR CE1 HE1 sing N N 343 TYR CE2 CZ sing Y N 344 TYR CE2 HE2 sing N N 345 TYR CZ OH sing N N 346 TYR OH HH sing N N 347 TYR OXT HXT sing N N 348 VAL N CA sing N N 349 VAL N H sing N N 350 VAL N H2 sing N N 351 VAL CA C sing N N 352 VAL CA CB sing N N 353 VAL CA HA sing N N 354 VAL C O doub N N 355 VAL C OXT sing N N 356 VAL CB CG1 sing N N 357 VAL CB CG2 sing N N 358 VAL CB HB sing N N 359 VAL CG1 HG11 sing N N 360 VAL CG1 HG12 sing N N 361 VAL CG1 HG13 sing N N 362 VAL CG2 HG21 sing N N 363 VAL CG2 HG22 sing N N 364 VAL CG2 HG23 sing N N 365 VAL OXT HXT sing N N 366 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3N1H _pdbx_initial_refinement_model.details 'PDB ENTRY 3N1H' #