data_3RAZ # _entry.id 3RAZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3RAZ RCSB RCSB064707 WWPDB D_1000064707 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-11210d _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3RAZ _pdbx_database_status.recvd_initial_deposition_date 2011-03-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Z.' 1 ? 'Burley, S.K.' 2 0000-0002-2487-9713 'Swaminathan, S.' 3 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 4 ? # _citation.id primary _citation.title 'The crystal structure of thioredoxin-related protein from Neisseria meningitidis serogroup B' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Z.' 1 ? primary 'Burley, S.K.' 2 0000-0002-2487-9713 primary 'Swaminathan, S.' 3 ? # _cell.entry_id 3RAZ _cell.length_a 48.443 _cell.length_b 69.033 _cell.length_c 45.032 _cell.angle_alpha 90.00 _cell.angle_beta 104.93 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3RAZ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Thioredoxin-related protein' 17161.844 1 ? ? ? ? 2 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKE(MSE)PA(MSE)SKWYKAQKKGSVD(MSE)VGIA LDTSDNIGNFLKQTPVSYPIWRYTGANSRNF(MSE)KTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHS KCREGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPV SYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCREGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11210d # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 ALA n 1 6 ASP n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 GLY n 1 11 TRP n 1 12 LYS n 1 13 ASP n 1 14 ASN n 1 15 THR n 1 16 PRO n 1 17 GLN n 1 18 SER n 1 19 LEU n 1 20 GLN n 1 21 SER n 1 22 LEU n 1 23 LYS n 1 24 ALA n 1 25 PRO n 1 26 VAL n 1 27 ARG n 1 28 ILE n 1 29 VAL n 1 30 ASN n 1 31 LEU n 1 32 TRP n 1 33 ALA n 1 34 THR n 1 35 TRP n 1 36 CYS n 1 37 GLY n 1 38 PRO n 1 39 CYS n 1 40 ARG n 1 41 LYS n 1 42 GLU n 1 43 MSE n 1 44 PRO n 1 45 ALA n 1 46 MSE n 1 47 SER n 1 48 LYS n 1 49 TRP n 1 50 TYR n 1 51 LYS n 1 52 ALA n 1 53 GLN n 1 54 LYS n 1 55 LYS n 1 56 GLY n 1 57 SER n 1 58 VAL n 1 59 ASP n 1 60 MSE n 1 61 VAL n 1 62 GLY n 1 63 ILE n 1 64 ALA n 1 65 LEU n 1 66 ASP n 1 67 THR n 1 68 SER n 1 69 ASP n 1 70 ASN n 1 71 ILE n 1 72 GLY n 1 73 ASN n 1 74 PHE n 1 75 LEU n 1 76 LYS n 1 77 GLN n 1 78 THR n 1 79 PRO n 1 80 VAL n 1 81 SER n 1 82 TYR n 1 83 PRO n 1 84 ILE n 1 85 TRP n 1 86 ARG n 1 87 TYR n 1 88 THR n 1 89 GLY n 1 90 ALA n 1 91 ASN n 1 92 SER n 1 93 ARG n 1 94 ASN n 1 95 PHE n 1 96 MSE n 1 97 LYS n 1 98 THR n 1 99 TYR n 1 100 GLY n 1 101 ASN n 1 102 THR n 1 103 VAL n 1 104 GLY n 1 105 VAL n 1 106 LEU n 1 107 PRO n 1 108 PHE n 1 109 THR n 1 110 VAL n 1 111 VAL n 1 112 GLU n 1 113 ALA n 1 114 PRO n 1 115 LYS n 1 116 CYS n 1 117 GLY n 1 118 TYR n 1 119 ARG n 1 120 GLN n 1 121 THR n 1 122 ILE n 1 123 THR n 1 124 GLY n 1 125 GLU n 1 126 VAL n 1 127 ASN n 1 128 GLU n 1 129 LYS n 1 130 SER n 1 131 LEU n 1 132 THR n 1 133 ASP n 1 134 ALA n 1 135 VAL n 1 136 LYS n 1 137 LEU n 1 138 ALA n 1 139 HIS n 1 140 SER n 1 141 LYS n 1 142 CYS n 1 143 ARG n 1 144 GLU n 1 145 GLY n 1 146 HIS n 1 147 HIS n 1 148 HIS n 1 149 HIS n 1 150 HIS n 1 151 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NMB0006 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Neisseria meningitidis serogroup B' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 491 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-codon+RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC - pSGX3 (BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9K1R4_NEIMB _struct_ref.pdbx_db_accession Q9K1R4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYP IWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3RAZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 143 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9K1R4 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 160 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 160 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RAZ MSE A 1 ? UNP Q9K1R4 ? ? 'expression tag' 18 1 1 3RAZ SER A 2 ? UNP Q9K1R4 ? ? 'expression tag' 19 2 1 3RAZ LEU A 3 ? UNP Q9K1R4 ? ? 'expression tag' 20 3 1 3RAZ GLU A 144 ? UNP Q9K1R4 ? ? 'expression tag' 161 4 1 3RAZ GLY A 145 ? UNP Q9K1R4 ? ? 'expression tag' 162 5 1 3RAZ HIS A 146 ? UNP Q9K1R4 ? ? 'expression tag' 163 6 1 3RAZ HIS A 147 ? UNP Q9K1R4 ? ? 'expression tag' 164 7 1 3RAZ HIS A 148 ? UNP Q9K1R4 ? ? 'expression tag' 165 8 1 3RAZ HIS A 149 ? UNP Q9K1R4 ? ? 'expression tag' 166 9 1 3RAZ HIS A 150 ? UNP Q9K1R4 ? ? 'expression tag' 167 10 1 3RAZ HIS A 151 ? UNP Q9K1R4 ? ? 'expression tag' 168 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3RAZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1 M Tris-HCl pH 8.5, 30% PEG 4K, 2.4 M lithium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-03-04 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3RAZ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 43.51 _reflns.d_resolution_high 2 _reflns.number_obs 9567 _reflns.number_all ? _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs 0.039 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.9 _reflns.B_iso_Wilson_estimate 32.2 _reflns.pdbx_redundancy 7.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 94.2 _reflns_shell.Rmerge_I_obs 0.171 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.6 _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1340 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3RAZ _refine.ls_number_reflns_obs 9567 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.19 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.51 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 98.22 _refine.ls_R_factor_obs 0.2335 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2312 _refine.ls_R_factor_R_free 0.2752 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.82 _refine.ls_number_reflns_R_free 461 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 31.84 _refine.aniso_B[1][1] -1.8788 _refine.aniso_B[2][2] 12.2827 _refine.aniso_B[3][3] -10.4038 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.6652 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.353 _refine.solvent_model_param_bsol 40.223 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.35 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1055 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1088 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 43.51 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.009 ? ? 1082 ? 'X-RAY DIFFRACTION' f_angle_d 1.188 ? ? 1467 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 16.460 ? ? 393 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.070 ? ? 161 ? 'X-RAY DIFFRACTION' f_plane_restr 0.008 ? ? 184 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.0001 2.2895 2995 0.2671 97.00 0.3564 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.2895 2.8844 3033 0.2603 99.00 0.3341 . . 167 . . . . 'X-RAY DIFFRACTION' . 2.8844 43.5229 3078 0.2126 99.00 0.2404 . . 160 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3RAZ _struct.title 'The crystal structure of thioredoxin-related protein from Neisseria meningitidis serogroup B' _struct.pdbx_descriptor 'Thioredoxin-related protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RAZ _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, thioredoxin-related protein, redoxin, SGX, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 18 ? LEU A 22 ? SER A 35 LEU A 39 5 ? 5 HELX_P HELX_P2 2 CYS A 36 ? ALA A 52 ? CYS A 53 ALA A 69 1 ? 17 HELX_P HELX_P3 3 THR A 67 ? THR A 78 ? THR A 84 THR A 95 1 ? 12 HELX_P HELX_P4 4 ASN A 91 ? THR A 98 ? ASN A 108 THR A 115 1 ? 8 HELX_P HELX_P5 5 ASN A 127 ? SER A 140 ? ASN A 144 SER A 157 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 36 SG ? ? ? 1_555 A CYS 39 SG ? ? A CYS 53 A CYS 56 1_555 ? ? ? ? ? ? ? 2.063 ? ? covale1 covale both ? A GLU 42 C ? ? ? 1_555 A MSE 43 N ? ? A GLU 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 43 C ? ? ? 1_555 A PRO 44 N ? ? A MSE 60 A PRO 61 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale3 covale both ? A ALA 45 C ? ? ? 1_555 A MSE 46 N ? ? A ALA 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 46 C ? ? ? 1_555 A SER 47 N ? ? A MSE 63 A SER 64 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? A ASP 59 C ? ? ? 1_555 A MSE 60 N ? ? A ASP 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A MSE 60 C ? ? ? 1_555 A VAL 61 N ? ? A MSE 77 A VAL 78 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A PHE 95 C ? ? ? 1_555 A MSE 96 N ? ? A PHE 112 A MSE 113 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? A MSE 96 C ? ? ? 1_555 A LYS 97 N ? ? A MSE 113 A LYS 114 1_555 ? ? ? ? ? ? ? 1.330 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 106 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 123 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 107 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 124 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 4.58 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PRO A 16 ? GLN A 17 ? PRO A 33 GLN A 34 A 2 LEU A 8 ? GLY A 10 ? LEU A 25 GLY A 27 A 3 ILE A 84 ? TYR A 87 ? ILE A 101 TYR A 104 A 4 VAL A 58 ? ALA A 64 ? VAL A 75 ALA A 81 A 5 VAL A 26 ? TRP A 32 ? VAL A 43 TRP A 49 A 6 PHE A 108 ? ALA A 113 ? PHE A 125 ALA A 130 A 7 TYR A 118 ? THR A 121 ? TYR A 135 THR A 138 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 17 ? O GLN A 34 N LEU A 8 ? N LEU A 25 A 2 3 N ALA A 9 ? N ALA A 26 O ARG A 86 ? O ARG A 103 A 3 4 O TRP A 85 ? O TRP A 102 N ALA A 64 ? N ALA A 81 A 4 5 O ILE A 63 ? O ILE A 80 N ASN A 30 ? N ASN A 47 A 5 6 N LEU A 31 ? N LEU A 48 O PHE A 108 ? O PHE A 125 A 6 7 N VAL A 111 ? N VAL A 128 O GLN A 120 ? O GLN A 137 # _database_PDB_matrix.entry_id 3RAZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3RAZ _atom_sites.fract_transf_matrix[1][1] 0.020643 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005503 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014486 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022982 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 18 ? ? ? A . n A 1 2 SER 2 19 ? ? ? A . n A 1 3 LEU 3 20 ? ? ? A . n A 1 4 SER 4 21 ? ? ? A . n A 1 5 ALA 5 22 ? ? ? A . n A 1 6 ASP 6 23 ? ? ? A . n A 1 7 GLU 7 24 24 GLU GLU A . n A 1 8 LEU 8 25 25 LEU LEU A . n A 1 9 ALA 9 26 26 ALA ALA A . n A 1 10 GLY 10 27 27 GLY GLY A . n A 1 11 TRP 11 28 28 TRP TRP A . n A 1 12 LYS 12 29 29 LYS LYS A . n A 1 13 ASP 13 30 30 ASP ASP A . n A 1 14 ASN 14 31 31 ASN ASN A . n A 1 15 THR 15 32 32 THR THR A . n A 1 16 PRO 16 33 33 PRO PRO A . n A 1 17 GLN 17 34 34 GLN GLN A . n A 1 18 SER 18 35 35 SER SER A . n A 1 19 LEU 19 36 36 LEU LEU A . n A 1 20 GLN 20 37 37 GLN GLN A . n A 1 21 SER 21 38 38 SER SER A . n A 1 22 LEU 22 39 39 LEU LEU A . n A 1 23 LYS 23 40 40 LYS LYS A . n A 1 24 ALA 24 41 41 ALA ALA A . n A 1 25 PRO 25 42 42 PRO PRO A . n A 1 26 VAL 26 43 43 VAL VAL A . n A 1 27 ARG 27 44 44 ARG ARG A . n A 1 28 ILE 28 45 45 ILE ILE A . n A 1 29 VAL 29 46 46 VAL VAL A . n A 1 30 ASN 30 47 47 ASN ASN A . n A 1 31 LEU 31 48 48 LEU LEU A . n A 1 32 TRP 32 49 49 TRP TRP A . n A 1 33 ALA 33 50 50 ALA ALA A . n A 1 34 THR 34 51 51 THR THR A . n A 1 35 TRP 35 52 52 TRP TRP A . n A 1 36 CYS 36 53 53 CYS CYS A . n A 1 37 GLY 37 54 54 GLY GLY A . n A 1 38 PRO 38 55 55 PRO PRO A . n A 1 39 CYS 39 56 56 CYS CYS A . n A 1 40 ARG 40 57 57 ARG ARG A . n A 1 41 LYS 41 58 58 LYS LYS A . n A 1 42 GLU 42 59 59 GLU GLU A . n A 1 43 MSE 43 60 60 MSE MSE A . n A 1 44 PRO 44 61 61 PRO PRO A . n A 1 45 ALA 45 62 62 ALA ALA A . n A 1 46 MSE 46 63 63 MSE MSE A . n A 1 47 SER 47 64 64 SER SER A . n A 1 48 LYS 48 65 65 LYS LYS A . n A 1 49 TRP 49 66 66 TRP TRP A . n A 1 50 TYR 50 67 67 TYR TYR A . n A 1 51 LYS 51 68 68 LYS LYS A . n A 1 52 ALA 52 69 69 ALA ALA A . n A 1 53 GLN 53 70 70 GLN GLN A . n A 1 54 LYS 54 71 71 LYS LYS A . n A 1 55 LYS 55 72 72 LYS LYS A . n A 1 56 GLY 56 73 73 GLY GLY A . n A 1 57 SER 57 74 74 SER SER A . n A 1 58 VAL 58 75 75 VAL VAL A . n A 1 59 ASP 59 76 76 ASP ASP A . n A 1 60 MSE 60 77 77 MSE MSE A . n A 1 61 VAL 61 78 78 VAL VAL A . n A 1 62 GLY 62 79 79 GLY GLY A . n A 1 63 ILE 63 80 80 ILE ILE A . n A 1 64 ALA 64 81 81 ALA ALA A . n A 1 65 LEU 65 82 82 LEU LEU A . n A 1 66 ASP 66 83 83 ASP ASP A . n A 1 67 THR 67 84 84 THR THR A . n A 1 68 SER 68 85 85 SER SER A . n A 1 69 ASP 69 86 86 ASP ASP A . n A 1 70 ASN 70 87 87 ASN ASN A . n A 1 71 ILE 71 88 88 ILE ILE A . n A 1 72 GLY 72 89 89 GLY GLY A . n A 1 73 ASN 73 90 90 ASN ASN A . n A 1 74 PHE 74 91 91 PHE PHE A . n A 1 75 LEU 75 92 92 LEU LEU A . n A 1 76 LYS 76 93 93 LYS LYS A . n A 1 77 GLN 77 94 94 GLN GLN A . n A 1 78 THR 78 95 95 THR THR A . n A 1 79 PRO 79 96 96 PRO PRO A . n A 1 80 VAL 80 97 97 VAL VAL A . n A 1 81 SER 81 98 98 SER SER A . n A 1 82 TYR 82 99 99 TYR TYR A . n A 1 83 PRO 83 100 100 PRO PRO A . n A 1 84 ILE 84 101 101 ILE ILE A . n A 1 85 TRP 85 102 102 TRP TRP A . n A 1 86 ARG 86 103 103 ARG ARG A . n A 1 87 TYR 87 104 104 TYR TYR A . n A 1 88 THR 88 105 105 THR THR A . n A 1 89 GLY 89 106 106 GLY GLY A . n A 1 90 ALA 90 107 107 ALA ALA A . n A 1 91 ASN 91 108 108 ASN ASN A . n A 1 92 SER 92 109 109 SER SER A . n A 1 93 ARG 93 110 110 ARG ARG A . n A 1 94 ASN 94 111 111 ASN ASN A . n A 1 95 PHE 95 112 112 PHE PHE A . n A 1 96 MSE 96 113 113 MSE MSE A . n A 1 97 LYS 97 114 114 LYS LYS A . n A 1 98 THR 98 115 115 THR THR A . n A 1 99 TYR 99 116 116 TYR TYR A . n A 1 100 GLY 100 117 117 GLY GLY A . n A 1 101 ASN 101 118 118 ASN ASN A . n A 1 102 THR 102 119 119 THR THR A . n A 1 103 VAL 103 120 120 VAL VAL A . n A 1 104 GLY 104 121 121 GLY GLY A . n A 1 105 VAL 105 122 122 VAL VAL A . n A 1 106 LEU 106 123 123 LEU LEU A . n A 1 107 PRO 107 124 124 PRO PRO A . n A 1 108 PHE 108 125 125 PHE PHE A . n A 1 109 THR 109 126 126 THR THR A . n A 1 110 VAL 110 127 127 VAL VAL A . n A 1 111 VAL 111 128 128 VAL VAL A . n A 1 112 GLU 112 129 129 GLU GLU A . n A 1 113 ALA 113 130 130 ALA ALA A . n A 1 114 PRO 114 131 131 PRO PRO A . n A 1 115 LYS 115 132 132 LYS LYS A . n A 1 116 CYS 116 133 133 CYS CYS A . n A 1 117 GLY 117 134 134 GLY GLY A . n A 1 118 TYR 118 135 135 TYR TYR A . n A 1 119 ARG 119 136 136 ARG ARG A . n A 1 120 GLN 120 137 137 GLN GLN A . n A 1 121 THR 121 138 138 THR THR A . n A 1 122 ILE 122 139 139 ILE ILE A . n A 1 123 THR 123 140 140 THR THR A . n A 1 124 GLY 124 141 141 GLY GLY A . n A 1 125 GLU 125 142 142 GLU GLU A . n A 1 126 VAL 126 143 143 VAL VAL A . n A 1 127 ASN 127 144 144 ASN ASN A . n A 1 128 GLU 128 145 145 GLU GLU A . n A 1 129 LYS 129 146 146 LYS LYS A . n A 1 130 SER 130 147 147 SER SER A . n A 1 131 LEU 131 148 148 LEU LEU A . n A 1 132 THR 132 149 149 THR THR A . n A 1 133 ASP 133 150 150 ASP ASP A . n A 1 134 ALA 134 151 151 ALA ALA A . n A 1 135 VAL 135 152 152 VAL VAL A . n A 1 136 LYS 136 153 153 LYS LYS A . n A 1 137 LEU 137 154 154 LEU LEU A . n A 1 138 ALA 138 155 155 ALA ALA A . n A 1 139 HIS 139 156 156 HIS HIS A . n A 1 140 SER 140 157 157 SER SER A . n A 1 141 LYS 141 158 158 LYS LYS A . n A 1 142 CYS 142 159 ? ? ? A . n A 1 143 ARG 143 160 ? ? ? A . n A 1 144 GLU 144 161 ? ? ? A . n A 1 145 GLY 145 162 ? ? ? A . n A 1 146 HIS 146 163 ? ? ? A . n A 1 147 HIS 147 164 ? ? ? A . n A 1 148 HIS 148 165 ? ? ? A . n A 1 149 HIS 149 166 ? ? ? A . n A 1 150 HIS 150 167 ? ? ? A . n A 1 151 HIS 151 168 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 3 3 HOH HOH A . B 2 HOH 3 4 4 HOH HOH A . B 2 HOH 4 5 5 HOH HOH A . B 2 HOH 5 6 6 HOH HOH A . B 2 HOH 6 7 7 HOH HOH A . B 2 HOH 7 8 8 HOH HOH A . B 2 HOH 8 9 9 HOH HOH A . B 2 HOH 9 10 10 HOH HOH A . B 2 HOH 10 11 11 HOH HOH A . B 2 HOH 11 12 12 HOH HOH A . B 2 HOH 12 13 13 HOH HOH A . B 2 HOH 13 14 14 HOH HOH A . B 2 HOH 14 15 15 HOH HOH A . B 2 HOH 15 16 16 HOH HOH A . B 2 HOH 16 17 17 HOH HOH A . B 2 HOH 17 169 18 HOH HOH A . B 2 HOH 18 170 19 HOH HOH A . B 2 HOH 19 171 20 HOH HOH A . B 2 HOH 20 172 21 HOH HOH A . B 2 HOH 21 173 22 HOH HOH A . B 2 HOH 22 174 23 HOH HOH A . B 2 HOH 23 175 24 HOH HOH A . B 2 HOH 24 176 25 HOH HOH A . B 2 HOH 25 177 26 HOH HOH A . B 2 HOH 26 178 27 HOH HOH A . B 2 HOH 27 179 28 HOH HOH A . B 2 HOH 28 180 29 HOH HOH A . B 2 HOH 29 181 30 HOH HOH A . B 2 HOH 30 182 31 HOH HOH A . B 2 HOH 31 183 32 HOH HOH A . B 2 HOH 32 184 33 HOH HOH A . B 2 HOH 33 185 34 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 43 A MSE 60 ? MET SELENOMETHIONINE 2 A MSE 46 A MSE 63 ? MET SELENOMETHIONINE 3 A MSE 60 A MSE 77 ? MET SELENOMETHIONINE 4 A MSE 96 A MSE 113 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' citation_author 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 3 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SOLVE phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 18 ? A MSE 1 2 1 Y 1 A SER 19 ? A SER 2 3 1 Y 1 A LEU 20 ? A LEU 3 4 1 Y 1 A SER 21 ? A SER 4 5 1 Y 1 A ALA 22 ? A ALA 5 6 1 Y 1 A ASP 23 ? A ASP 6 7 1 Y 1 A CYS 159 ? A CYS 142 8 1 Y 1 A ARG 160 ? A ARG 143 9 1 Y 1 A GLU 161 ? A GLU 144 10 1 Y 1 A GLY 162 ? A GLY 145 11 1 Y 1 A HIS 163 ? A HIS 146 12 1 Y 1 A HIS 164 ? A HIS 147 13 1 Y 1 A HIS 165 ? A HIS 148 14 1 Y 1 A HIS 166 ? A HIS 149 15 1 Y 1 A HIS 167 ? A HIS 150 16 1 Y 1 A HIS 168 ? A HIS 151 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #