HEADER TRANSFERASE/DNA 28-MAR-11 3RB4 TITLE DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER G BASE OPPOSITE TITLE 2 THE 3-METHYLCYTOSINE (M3C) LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3'); COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6) COMPND 14 P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'); COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA M3C-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC KEYWDS DNA DAMAGE, DNA REPAIR, DNA REPLICATION, DNA-BINDING, DNA-DIRECTED KEYWDS 2 DNA POLYMERASE, MAGNESIUM, METAL-BINDING, MUTATOR PROTEIN, KEYWDS 3 NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX, LESION KEYWDS 4 BYPASS, DNA POLYMERASE, Y-FAMILY POLYMERASE, DNTP BINDING, 3- KEYWDS 5 METHYLCYTOSINE EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,D.J.PATEL REVDAT 3 13-SEP-23 3RB4 1 REMARK SEQADV LINK REVDAT 2 19-JUN-13 3RB4 1 JRNL VERSN REVDAT 1 15-JUN-11 3RB4 0 JRNL AUTH O.RECHKOBLIT,J.C.DELANEY,J.M.ESSIGMANN,D.J.PATEL JRNL TITL IMPLICATIONS FOR DAMAGE RECOGNITION DURING DPO4-MEDIATED JRNL TITL 2 MUTAGENIC BYPASS OF M1G AND M3C LESIONS. JRNL REF STRUCTURE V. 19 821 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21645853 JRNL DOI 10.1016/J.STR.2011.03.020 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 25974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 1085 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.20000 REMARK 3 B22 (A**2) : -1.11000 REMARK 3 B33 (A**2) : 4.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.375 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.526 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6852 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9431 ; 1.454 ; 2.202 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.130 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;34.602 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1120 ;19.054 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;18.574 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1079 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4608 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3411 ; 0.782 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5518 ; 0.861 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3441 ; 1.377 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3913 ; 2.385 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7031 1.5086 2.5884 REMARK 3 T TENSOR REMARK 3 T11: 0.0555 T22: 0.0433 REMARK 3 T33: 0.1040 T12: 0.0095 REMARK 3 T13: 0.0040 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 3.5304 L22: 2.3865 REMARK 3 L33: 1.1628 L12: -0.9741 REMARK 3 L13: -0.1245 L23: 0.1309 REMARK 3 S TENSOR REMARK 3 S11: -0.1398 S12: -0.2738 S13: -0.0425 REMARK 3 S21: 0.1623 S22: 0.2238 S23: 0.0131 REMARK 3 S31: 0.0008 S32: 0.1046 S33: -0.0840 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4690 56.8505 39.3939 REMARK 3 T TENSOR REMARK 3 T11: 0.6686 T22: 0.7164 REMARK 3 T33: 0.3497 T12: -0.1526 REMARK 3 T13: 0.0296 T23: 0.0738 REMARK 3 L TENSOR REMARK 3 L11: 4.3104 L22: 1.0856 REMARK 3 L33: 6.3416 L12: 0.6698 REMARK 3 L13: -1.2325 L23: -1.8291 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: -0.6744 S13: -0.6518 REMARK 3 S21: 0.2623 S22: -0.1961 S23: -0.2525 REMARK 3 S31: -0.1871 S32: -0.0601 S33: 0.2279 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 802 D 814 REMARK 3 RESIDUE RANGE : E 901 E 919 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1470 -6.4940 12.5371 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.3835 REMARK 3 T33: 0.1440 T12: 0.1024 REMARK 3 T13: -0.0746 T23: 0.0798 REMARK 3 L TENSOR REMARK 3 L11: 2.4274 L22: 2.9482 REMARK 3 L33: 2.0695 L12: -0.7899 REMARK 3 L13: -1.4343 L23: 0.5664 REMARK 3 S TENSOR REMARK 3 S11: -0.3053 S12: -0.9412 S13: -0.1816 REMARK 3 S21: 0.6253 S22: 0.3696 S23: -0.0984 REMARK 3 S31: 0.1683 S32: 0.6449 S33: -0.0643 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1806 H 1814 REMARK 3 RESIDUE RANGE : J 1905 J 1915 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3440 46.6380 43.8064 REMARK 3 T TENSOR REMARK 3 T11: 1.2321 T22: 1.2504 REMARK 3 T33: 1.1265 T12: -0.1646 REMARK 3 T13: -0.0374 T23: 0.4314 REMARK 3 L TENSOR REMARK 3 L11: 9.1202 L22: 0.2755 REMARK 3 L33: 2.6636 L12: 0.3645 REMARK 3 L13: -2.2461 L23: 0.6070 REMARK 3 S TENSOR REMARK 3 S11: -0.4257 S12: -1.1382 S13: -1.7981 REMARK 3 S21: 0.4237 S22: -0.2953 S23: -0.0280 REMARK 3 S31: 0.9378 S32: -0.1626 S33: 0.7209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3RAQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 100 MM CALCIUM REMARK 280 ACETATE AND 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.99750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 900 REMARK 465 DG H 1802 REMARK 465 DT H 1803 REMARK 465 DT H 1804 REMARK 465 DC J 1900 REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 465 DA J 1903 REMARK 465 DA J 1916 REMARK 465 DA J 1917 REMARK 465 DC J 1918 REMARK 465 DC J 1919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC E 901 P OP1 OP2 REMARK 470 DDG H1814 N9 C8 N7 C5 C6 O6 N1 REMARK 470 DDG H1814 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 1 O HOH A 532 2.14 REMARK 500 OH TYR B 1048 O1G DGT B 1414 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 802 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG D 802 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT D 803 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DT D 803 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DT D 804 O3' - P - O5' ANGL. DEV. = -22.6 DEGREES REMARK 500 DT D 804 O3' - P - OP2 ANGL. DEV. = -15.4 DEGREES REMARK 500 DT D 804 O3' - P - OP1 ANGL. DEV. = -14.6 DEGREES REMARK 500 DT D 804 O5' - P - OP1 ANGL. DEV. = 9.8 DEGREES REMARK 500 DT D 804 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG D 805 C3' - C2' - C1' ANGL. DEV. = -7.3 DEGREES REMARK 500 DG D 805 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 DT D 811 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG D 813 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC E 901 O4' - C1' - N1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DT E 902 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DA E 904 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 DC E 907 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA E 909 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT E 913 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DC E 914 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC E 915 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA E 916 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA E 917 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 918 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC E 919 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG H1806 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA H1807 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG H1813 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC J1905 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA J1909 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT J1913 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 58.68 23.64 REMARK 500 ASN A 20 71.42 -162.26 REMARK 500 PRO A 21 -9.98 -54.61 REMARK 500 GLU A 38 109.79 -46.95 REMARK 500 ALA A 71 170.56 -57.73 REMARK 500 SER A 96 119.44 -177.30 REMARK 500 SER A 103 -168.07 -167.58 REMARK 500 MET A 216 -62.68 -95.83 REMARK 500 ASN A 234 32.88 -144.74 REMARK 500 ASP A 277 62.38 65.03 REMARK 500 LYS A 278 -12.68 82.78 REMARK 500 LYS A 339 61.72 65.69 REMARK 500 TYR B1010 56.45 26.65 REMARK 500 PHE B1011 -70.92 -42.03 REMARK 500 ASN B1020 91.71 -164.20 REMARK 500 SER B1022 39.62 -78.29 REMARK 500 ARG B1036 -126.89 -86.50 REMARK 500 MET B1076 94.54 -56.59 REMARK 500 LYS B1098 95.40 -69.76 REMARK 500 SER B1103 -167.54 175.79 REMARK 500 LEU B1109 -166.82 -108.23 REMARK 500 LYS B1114 33.99 -95.74 REMARK 500 VAL B1115 143.73 59.66 REMARK 500 ARG B1116 -157.92 -83.71 REMARK 500 ASP B1117 132.11 76.20 REMARK 500 GLU B1136 2.07 -160.21 REMARK 500 VAL B1140 -168.41 -127.78 REMARK 500 LYS B1159 -70.50 -37.55 REMARK 500 ASN B1161 134.44 56.21 REMARK 500 ASP B1167 -115.59 -72.17 REMARK 500 ARG B1176 -79.64 -94.00 REMARK 500 ASP B1182 47.41 -91.31 REMARK 500 ASP B1204 -14.20 -49.72 REMARK 500 LYS B1212 43.58 -66.65 REMARK 500 LEU B1213 -54.54 -173.18 REMARK 500 ASP B1231 -18.67 85.25 REMARK 500 ARG B1247 139.90 -173.81 REMARK 500 ASP B1277 107.17 45.21 REMARK 500 LYS B1278 -47.14 77.98 REMARK 500 LYS B1317 13.09 -69.59 REMARK 500 GLU B1325 41.90 -80.34 REMARK 500 ASP B1326 145.11 169.29 REMARK 500 LYS B1339 99.50 51.57 REMARK 500 PHE B1340 -158.35 -97.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 7 OD1 44.8 REMARK 620 3 ASP A 105 OD1 119.9 89.3 REMARK 620 4 ASP A 105 OD2 103.0 58.5 47.5 REMARK 620 5 GLU A 106 OE2 77.5 107.5 86.4 128.0 REMARK 620 6 DGT A 414 O2A 107.2 81.3 98.2 60.1 170.2 REMARK 620 7 HOH D 501 O 62.9 100.4 165.0 147.4 79.9 94.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 90.4 REMARK 620 3 ASP A 105 OD2 74.8 90.4 REMARK 620 4 DGT A 414 O2A 96.6 157.5 71.1 REMARK 620 5 DGT A 414 O1B 167.3 88.6 92.5 79.9 REMARK 620 6 DGT A 414 O1G 108.3 116.6 152.6 81.5 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 86.9 REMARK 620 3 HOH A 512 O 69.8 128.6 REMARK 620 4 HOH A 516 O 80.0 66.7 64.5 REMARK 620 5 HOH D 514 O 165.1 101.5 95.5 91.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 55 O REMARK 620 2 ASP B1007 OD2 77.4 REMARK 620 3 ASP B1007 OD1 119.3 42.7 REMARK 620 4 PHE B1008 O 68.0 93.0 100.2 REMARK 620 5 ASP B1105 OD2 159.0 112.1 69.7 92.2 REMARK 620 6 DGT B1414 O2A 112.3 96.6 88.1 170.2 85.9 REMARK 620 7 DGT B1414 O1B 90.8 156.6 148.0 101.3 86.0 69.1 REMARK 620 8 DGT B1414 O3B 41.2 110.8 151.5 90.2 136.9 84.7 51.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD1 REMARK 620 2 ASP B1105 OD1 81.4 REMARK 620 3 GLU B1106 OE2 85.7 117.3 REMARK 620 4 DGT B1414 O2A 101.7 89.9 152.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B1181 O REMARK 620 2 ILE B1186 O 81.6 REMARK 620 3 HOH B1512 O 90.4 80.0 REMARK 620 4 HOH B1514 O 80.6 159.7 90.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RAQ RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER C BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RAX RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER T BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RB0 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER G BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RB3 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER A BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION DBREF 3RB4 A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RB4 B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RB4 D 802 814 PDB 3RB4 3RB4 802 814 DBREF 3RB4 H 1802 1814 PDB 3RB4 3RB4 1802 1814 DBREF 3RB4 E 900 919 PDB 3RB4 3RB4 900 919 DBREF 3RB4 J 1900 1919 PDB 3RB4 3RB4 1900 1919 SEQADV 3RB4 GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3RB4 GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 D 13 DG DT DT DG DG DA DT DG DG DT DA DG DDG SEQRES 1 E 20 DC DC DT DA DA DC ME6 DC DT DA DC DC DA SEQRES 2 E 20 DT DC DC DA DA DC DC SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 H 13 DG DT DT DG DG DA DT DG DG DT DA DG DDG SEQRES 1 J 20 DC DC DT DA DA DC ME6 DC DT DA DC DC DA SEQRES 2 J 20 DT DC DC DA DA DC DC MODRES 3RB4 DDG D 814 DG MODRES 3RB4 ME6 E 906 DC MODRES 3RB4 DDG H 1814 DG MODRES 3RB4 ME6 J 1906 DC HET DDG D 814 21 HET ME6 E 906 20 HET DDG H1814 10 HET ME6 J1906 20 HET DGT A 414 31 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET DGT B1414 31 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM ME6 [(2R,3S,5R)-5-(4-AZANYL-3-METHYL-2-OXO-PYRIMIDIN-3-IUM- HETNAM 2 ME6 1-YL)-3-HYDROXY-OXOLAN-2-YL]METHYL DIHYDROGEN HETNAM 3 ME6 PHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 2 DDG 2(C10 H14 N5 O6 P) FORMUL 3 ME6 2(C10 H17 N3 O7 P 1+) FORMUL 7 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 CA 6(CA 2+) FORMUL 15 HOH *67(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 ASN A 47 LYS A 52 1 6 HELIX 3 3 PRO A 60 LEU A 68 1 9 HELIX 4 4 ARG A 77 GLU A 94 1 18 HELIX 5 5 SER A 112 VAL A 115 5 4 HELIX 6 6 ASP A 117 GLU A 136 1 20 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 GLY A 198 1 12 HELIX 11 11 LYS A 201 SER A 207 5 7 HELIX 12 12 GLU A 209 GLY A 218 1 10 HELIX 13 13 GLY A 218 ARG A 230 1 13 HELIX 14 14 ASN A 257 ASP A 277 1 21 HELIX 15 15 SER A 307 ASP A 326 1 20 HELIX 16 16 TYR B 1010 LEU B 1019 1 10 HELIX 17 17 ASN B 1047 LYS B 1052 1 6 HELIX 18 18 PRO B 1060 LEU B 1068 1 9 HELIX 19 19 ARG B 1077 GLU B 1094 1 18 HELIX 20 20 ASP B 1117 LYS B 1137 1 21 HELIX 21 21 ASN B 1147 ALA B 1158 1 12 HELIX 22 22 GLU B 1170 LEU B 1178 1 9 HELIX 23 23 GLY B 1187 LYS B 1196 1 10 HELIX 24 24 LEU B 1202 LEU B 1206 5 5 HELIX 25 25 PHE B 1210 GLY B 1215 1 6 HELIX 26 26 GLU B 1219 ASP B 1231 1 13 HELIX 27 27 ILE B 1261 ASP B 1277 1 17 HELIX 28 28 SER B 1307 LYS B 1317 1 11 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O ILE A 330 N SER A 255 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 GLU B1100 ILE B1101 0 SHEET 2 D 5 GLU B1106 TYR B1108 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 VAL B1003 PHE B1008 -1 N VAL B1006 O ALA B1107 SHEET 4 D 5 VAL B1140 SER B1145 -1 O GLY B1143 N PHE B1005 SHEET 5 D 5 GLY B1162 VAL B1165 1 O GLY B1162 N VAL B1142 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1030 O THR B1045 SHEET 3 E 3 VAL B1072 PRO B1075 1 O LEU B1074 N CYS B1031 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 SER B1338 -1 O ILE B1333 N VAL B1249 SHEET 3 F 4 ALA B1283 THR B1290 -1 N ALA B1283 O SER B1338 SHEET 4 F 4 ILE B1295 ARG B1298 -1 O ARG B1298 N VAL B1286 LINK O3' DG D 813 P DDG D 814 1555 1555 1.62 LINK O3' DC E 905 P ME6 E 906 1555 1555 1.59 LINK O3' ME6 E 906 P DC E 907 1555 1555 1.60 LINK O3' DG H1813 P DDG H1814 1555 1555 1.61 LINK O3' DC J1905 P ME6 J1906 1555 1555 1.61 LINK O3' ME6 J1906 P DC J1907 1555 1555 1.60 LINK OD2 ASP A 7 CA CA A 415 1555 1555 2.87 LINK OD1 ASP A 7 CA CA A 415 1555 1555 2.87 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.32 LINK O PHE A 8 CA CA A 416 1555 1555 2.29 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.35 LINK OD2 ASP A 105 CA CA A 415 1555 1555 2.89 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.32 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.32 LINK O ALA A 181 CA CA A 417 1555 1555 2.32 LINK O ILE A 186 CA CA A 417 1555 1555 2.50 LINK O2A DGT A 414 CA CA A 415 1555 1555 2.31 LINK O2A DGT A 414 CA CA A 416 1555 1555 2.24 LINK O1B DGT A 414 CA CA A 416 1555 1555 2.32 LINK O1G DGT A 414 CA CA A 416 1555 1555 2.35 LINK CA CA A 415 O HOH D 501 1555 1555 2.30 LINK CA CA A 417 O HOH A 512 1555 1555 2.63 LINK CA CA A 417 O HOH A 516 1555 1555 2.38 LINK CA CA A 417 O HOH D 514 1555 1555 2.60 LINK O HOH B 55 CA CA B1416 1555 1555 3.17 LINK OD1 ASP B1007 CA CA B1415 1555 1555 2.58 LINK OD2 ASP B1007 CA CA B1416 1555 1555 2.91 LINK OD1 ASP B1007 CA CA B1416 1555 1555 3.09 LINK O PHE B1008 CA CA B1416 1555 1555 2.32 LINK OD1 ASP B1105 CA CA B1415 1555 1555 3.12 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.31 LINK OE2 GLU B1106 CA CA B1415 1555 1555 3.07 LINK O ALA B1181 CA CA B1417 1555 1555 2.32 LINK O ILE B1186 CA CA B1417 1555 1555 2.87 LINK O2A DGT B1414 CA CA B1415 1555 1555 2.32 LINK O2A DGT B1414 CA CA B1416 1555 1555 2.32 LINK O1B DGT B1414 CA CA B1416 1555 1555 2.32 LINK O3B DGT B1414 CA CA B1416 1555 1555 3.16 LINK CA CA B1417 O HOH B1512 1555 1555 2.37 LINK CA CA B1417 O HOH B1514 1555 1555 2.75 CISPEP 1 LYS A 159 PRO A 160 0 -0.94 SITE 1 AC1 17 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 17 TYR A 12 ALA A 44 THR A 45 TYR A 48 SITE 3 AC1 17 ARG A 51 ASP A 105 LYS A 159 CA A 415 SITE 4 AC1 17 CA A 416 HOH A 502 HOH A 508 DDG D 814 SITE 5 AC1 17 DC E 905 SITE 1 AC2 7 ASP A 7 ASP A 105 GLU A 106 DGT A 414 SITE 2 AC2 7 CA A 416 HOH D 501 DDG D 814 SITE 1 AC3 5 ASP A 7 PHE A 8 ASP A 105 DGT A 414 SITE 2 AC3 5 CA A 415 SITE 1 AC4 5 ALA A 181 ILE A 186 HOH A 512 HOH A 516 SITE 2 AC4 5 HOH D 514 SITE 1 AC5 17 HOH B 55 PHE B1008 TYR B1010 PHE B1011 SITE 2 AC5 17 TYR B1012 VAL B1032 ALA B1044 THR B1045 SITE 3 AC5 17 TYR B1048 ARG B1051 ASP B1105 LYS B1159 SITE 4 AC5 17 CA B1415 CA B1416 DDG H1814 DC J1905 SITE 5 AC5 17 ME6 J1906 SITE 1 AC6 6 ASP B1007 ASP B1105 GLU B1106 DGT B1414 SITE 2 AC6 6 CA B1416 DDG H1814 SITE 1 AC7 5 ASP B1007 PHE B1008 ASP B1105 DGT B1414 SITE 2 AC7 5 CA B1415 SITE 1 AC8 4 ALA B1181 ILE B1186 HOH B1512 HOH B1514 CRYST1 53.267 109.995 101.535 90.00 101.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018773 0.000000 0.003768 0.00000 SCALE2 0.000000 0.009091 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010045 0.00000