HEADER TRANSFERASE/DNA 28-MAR-11 3RB6 TITLE DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER A BASE OPPOSITE TITLE 2 THE 3-METHYLCYTOSINE (M3C) LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'); COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6) COMPND 14 P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'); COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA M3C-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC KEYWDS DNA DAMAGE, DNA REPAIR, DNA REPLICATION, DNA-BINDING, DNA-DIRECTED KEYWDS 2 DNA POLYMERASE, MAGNESIUM, METAL-BINDING, MUTATOR PROTEIN, KEYWDS 3 NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX, LESION KEYWDS 4 BYPASS, DNA POLYMERASE, Y-FAMILY POLYMERASE, METAL-BINDING; DNTP- KEYWDS 5 BINDING, 3-METHYLCYTOSINE EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,D.J.PATEL REVDAT 3 13-SEP-23 3RB6 1 REMARK SEQADV LINK REVDAT 2 19-JUN-13 3RB6 1 JRNL VERSN REVDAT 1 15-JUN-11 3RB6 0 JRNL AUTH O.RECHKOBLIT,J.C.DELANEY,J.M.ESSIGMANN,D.J.PATEL JRNL TITL IMPLICATIONS FOR DAMAGE RECOGNITION DURING DPO4-MEDIATED JRNL TITL 2 MUTAGENIC BYPASS OF M1G AND M3C LESIONS. JRNL REF STRUCTURE V. 19 821 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21645853 JRNL DOI 10.1016/J.STR.2011.03.020 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 28877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1531 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2000 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 1073 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.42000 REMARK 3 B22 (A**2) : 1.48000 REMARK 3 B33 (A**2) : 2.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.004 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.290 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6859 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9427 ; 1.438 ; 1.907 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.225 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;35.086 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1120 ;17.151 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;19.223 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1030 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4607 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7225 1.6045 2.3048 REMARK 3 T TENSOR REMARK 3 T11: 0.0935 T22: 0.0460 REMARK 3 T33: 0.1996 T12: -0.0024 REMARK 3 T13: 0.0257 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 3.5753 L22: 1.6963 REMARK 3 L33: 1.5112 L12: -1.1769 REMARK 3 L13: -0.6358 L23: 0.2880 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: -0.2529 S13: -0.0051 REMARK 3 S21: 0.1212 S22: 0.1380 S23: 0.0821 REMARK 3 S31: 0.0209 S32: 0.2197 S33: -0.0456 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1255 56.4086 39.5118 REMARK 3 T TENSOR REMARK 3 T11: 0.5059 T22: 0.6293 REMARK 3 T33: 0.2911 T12: -0.0818 REMARK 3 T13: -0.0137 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 3.1715 L22: 1.8011 REMARK 3 L33: 5.9283 L12: 0.6053 REMARK 3 L13: -1.0735 L23: -1.5993 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: -0.6309 S13: -0.4079 REMARK 3 S21: 0.3574 S22: -0.2088 S23: -0.1442 REMARK 3 S31: -0.2639 S32: 0.1283 S33: 0.1244 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 802 D 814 REMARK 3 RESIDUE RANGE : E 901 E 919 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1102 -6.3856 12.1820 REMARK 3 T TENSOR REMARK 3 T11: 0.2821 T22: 0.4940 REMARK 3 T33: 0.2044 T12: 0.1491 REMARK 3 T13: -0.0716 T23: 0.0880 REMARK 3 L TENSOR REMARK 3 L11: 2.1325 L22: 2.2997 REMARK 3 L33: 2.5625 L12: -0.9849 REMARK 3 L13: -1.3761 L23: 0.0797 REMARK 3 S TENSOR REMARK 3 S11: -0.4128 S12: -0.9763 S13: -0.1172 REMARK 3 S21: 0.6559 S22: 0.3282 S23: -0.0066 REMARK 3 S31: 0.1291 S32: 0.7648 S33: 0.0847 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1805 H 1814 REMARK 3 RESIDUE RANGE : J 1905 J 1915 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2063 46.4069 43.9145 REMARK 3 T TENSOR REMARK 3 T11: 0.5994 T22: 1.1639 REMARK 3 T33: 1.0239 T12: -0.0247 REMARK 3 T13: -0.3382 T23: 0.5599 REMARK 3 L TENSOR REMARK 3 L11: 4.5903 L22: 4.5531 REMARK 3 L33: 7.8144 L12: -0.6167 REMARK 3 L13: -4.3020 L23: -2.8289 REMARK 3 S TENSOR REMARK 3 S11: -0.4823 S12: -1.2118 S13: -1.0313 REMARK 3 S21: 0.4881 S22: -0.5806 S23: -0.9594 REMARK 3 S31: 0.6920 S32: 1.2453 S33: 1.0629 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3RB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30903 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3RB4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 100 MM CALCIUM REMARK 280 ACETATE AND 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.66400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 900 REMARK 465 DG H 1802 REMARK 465 DT H 1803 REMARK 465 DT H 1804 REMARK 465 DC J 1900 REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 465 DA J 1903 REMARK 465 DA J 1904 REMARK 465 DA J 1916 REMARK 465 DA J 1917 REMARK 465 DC J 1918 REMARK 465 DC J 1919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC E 901 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 902 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DT E 913 C3' - O3' - P ANGL. DEV. = 9.9 DEGREES REMARK 500 DG H1805 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 DG H1806 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DT H1808 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 63.37 21.58 REMARK 500 PRO A 21 -9.06 -58.69 REMARK 500 GLU A 38 99.23 -44.27 REMARK 500 LEU A 68 74.37 -156.09 REMARK 500 SER A 96 121.54 -177.63 REMARK 500 SER A 103 -178.26 -176.81 REMARK 500 ASN A 234 70.48 -164.20 REMARK 500 ASP A 277 73.99 53.02 REMARK 500 LYS A 278 -14.85 78.32 REMARK 500 GLU A 291 -51.04 -28.83 REMARK 500 LYS A 339 64.45 64.58 REMARK 500 TYR B1010 59.31 23.31 REMARK 500 PHE B1011 -72.37 -46.51 REMARK 500 ASN B1020 86.32 -156.10 REMARK 500 SER B1022 6.20 -64.28 REMARK 500 ARG B1036 -119.24 -75.45 REMARK 500 ASP B1039 7.43 84.77 REMARK 500 ASN B1047 157.98 -49.93 REMARK 500 ARG B1077 64.41 -102.57 REMARK 500 SER B1103 -166.77 -165.10 REMARK 500 LYS B1114 53.14 -109.59 REMARK 500 VAL B1115 120.71 47.45 REMARK 500 ASP B1117 127.08 163.10 REMARK 500 LYS B1159 -79.21 -44.71 REMARK 500 ASN B1161 70.30 48.55 REMARK 500 PHE B1210 -71.76 -31.75 REMARK 500 GLU B1235 109.10 -48.94 REMARK 500 THR B1239 102.35 -49.47 REMARK 500 ASP B1277 96.10 33.13 REMARK 500 LYS B1278 -25.63 74.82 REMARK 500 ASP B1292 30.94 -81.68 REMARK 500 ARG B1331 -52.69 -126.07 REMARK 500 LYS B1339 78.23 61.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 7 OD1 41.4 REMARK 620 3 ASP A 105 OD1 122.4 95.8 REMARK 620 4 ASP A 105 OD2 104.7 63.9 46.1 REMARK 620 5 GLU A 106 OE2 90.0 115.6 76.1 119.2 REMARK 620 6 DGT A 414 O2A 108.3 82.9 97.9 62.7 160.8 REMARK 620 7 HOH D 65 O 57.7 97.0 149.4 160.0 73.3 111.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 93.0 REMARK 620 3 ASP A 105 OD2 90.0 89.3 REMARK 620 4 DGT A 414 O2A 104.9 156.5 75.8 REMARK 620 5 DGT A 414 O1B 175.7 86.3 85.7 74.7 REMARK 620 6 DGT A 414 O2G 95.1 95.5 172.8 97.9 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 90.5 REMARK 620 3 HOH A 343 O 90.6 152.2 REMARK 620 4 HOH A 358 O 81.2 72.8 79.9 REMARK 620 5 HOH D 5 O 174.1 90.3 86.0 93.4 REMARK 620 6 HOH D 40 O 85.3 74.5 133.3 144.4 100.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 1 O REMARK 620 2 HOH B 8 O 68.5 REMARK 620 3 HOH B 9 O 91.3 130.7 REMARK 620 4 ALA B1181 O 167.5 115.4 77.3 REMARK 620 5 ILE B1186 O 89.6 84.1 142.4 102.4 REMARK 620 6 HOH H 3 O 105.6 165.2 61.3 73.4 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 6 O REMARK 620 2 ASP B1007 OD2 68.8 REMARK 620 3 ASP B1007 OD1 96.8 45.7 REMARK 620 4 ASP B1105 OD1 167.3 122.9 95.5 REMARK 620 5 ASP B1105 OD2 143.4 101.9 58.9 44.2 REMARK 620 6 GLU B1106 OE2 62.3 63.9 108.6 116.5 147.1 REMARK 620 7 DGT B1414 O2A 80.0 113.3 84.5 97.8 71.3 141.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD1 REMARK 620 2 PHE B1008 O 79.5 REMARK 620 3 ASP B1105 OD2 81.9 79.0 REMARK 620 4 DGT B1414 O2A 103.8 167.1 89.0 REMARK 620 5 DGT B1414 O1B 168.7 100.5 87.0 73.7 REMARK 620 6 DGT B1414 O3G 103.2 104.8 174.0 86.8 87.8 REMARK 620 7 DGT B1414 O3B 138.9 87.9 134.0 97.1 52.1 42.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RB4 RELATED DB: PDB REMARK 900 RELATED ID: 3RAQ RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER C BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RAX RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER T BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RB0 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER G BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RB3 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER A BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION DBREF 3RB6 A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RB6 B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RB6 D 802 814 PDB 3RB6 3RB6 802 814 DBREF 3RB6 H 1802 1814 PDB 3RB6 3RB6 1802 1814 DBREF 3RB6 E 900 919 PDB 3RB6 3RB6 900 919 DBREF 3RB6 J 1900 1919 PDB 3RB6 3RB6 1900 1919 SEQADV 3RB6 GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3RB6 GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 D 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DA SEQRES 1 E 20 DC DC DT DA DA DC ME6 DC DT DA DC DC DA SEQRES 2 E 20 DT DC DC DA DA DC DC SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 H 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DA SEQRES 1 J 20 DC DC DT DA DA DC ME6 DC DT DA DC DC DA SEQRES 2 J 20 DT DC DC DA DA DC DC MODRES 3RB6 2DA D 814 DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE MODRES 3RB6 ME6 E 906 DC MODRES 3RB6 2DA H 1814 DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE MODRES 3RB6 ME6 J 1906 DC HET 2DA D 814 20 HET ME6 E 906 20 HET 2DA H1814 20 HET ME6 J1906 20 HET DGT A 414 31 HET EPE A 342 15 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET DGT B1414 31 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HETNAM 2DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE HETNAM ME6 [(2R,3S,5R)-5-(4-AZANYL-3-METHYL-2-OXO-PYRIMIDIN-3-IUM- HETNAM 2 ME6 1-YL)-3-HYDROXY-OXOLAN-2-YL]METHYL DIHYDROGEN HETNAM 3 ME6 PHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM CA CALCIUM ION HETSYN EPE HEPES FORMUL 2 2DA 2(C10 H14 N5 O5 P) FORMUL 3 ME6 2(C10 H17 N3 O7 P 1+) FORMUL 7 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 EPE C8 H18 N2 O4 S FORMUL 9 CA 6(CA 2+) FORMUL 16 HOH *58(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 GLU A 94 1 18 HELIX 6 6 ASP A 117 GLU A 136 1 20 HELIX 7 7 ASN A 147 MET A 157 1 11 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 GLY A 198 1 12 HELIX 11 11 LYS A 201 SER A 207 5 7 HELIX 12 12 GLU A 209 GLY A 218 1 10 HELIX 13 13 GLY A 218 ARG A 230 1 13 HELIX 14 14 ASN A 257 ASP A 277 1 21 HELIX 15 15 SER A 307 ASP A 326 1 20 HELIX 16 16 TYR B 1010 ASN B 1020 1 11 HELIX 17 17 PRO B 1021 LYS B 1024 5 4 HELIX 18 18 ASN B 1047 LYS B 1052 1 6 HELIX 19 19 PRO B 1060 LEU B 1068 1 9 HELIX 20 20 ARG B 1077 GLU B 1094 1 18 HELIX 21 21 ASP B 1117 LYS B 1137 1 21 HELIX 22 22 ASN B 1147 ALA B 1158 1 12 HELIX 23 23 ASP B 1167 LEU B 1178 1 12 HELIX 24 24 ASP B 1179 VAL B 1183 5 5 HELIX 25 25 GLY B 1187 LYS B 1196 1 10 HELIX 26 26 LYS B 1201 SER B 1207 5 7 HELIX 27 27 GLU B 1209 GLY B 1218 1 10 HELIX 28 28 GLY B 1218 ARG B 1230 1 13 HELIX 29 29 ASN B 1257 ASP B 1277 1 21 HELIX 30 30 SER B 1307 GLU B 1325 1 19 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 ILE A 166 1 O ILE A 166 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O ILE A 330 N SER A 255 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B1099 ILE B1101 0 SHEET 2 D 5 GLU B1106 ILE B1111 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 ILE B1002 PHE B1008 -1 N VAL B1006 O ALA B1107 SHEET 4 D 5 VAL B1140 SER B1145 -1 O GLY B1143 N PHE B1005 SHEET 5 D 5 ILE B1163 VAL B1165 1 O LYS B1164 N VAL B1142 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1030 O ALA B1044 SHEET 3 E 3 VAL B1072 PRO B1075 1 O LEU B1074 N CYS B1031 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 PHE B1340 -1 O ILE B1333 N VAL B1249 SHEET 3 F 4 PRO B1281 THR B1290 -1 N VAL B1289 O ARG B1332 SHEET 4 F 4 ILE B1295 THR B1301 -1 O ARG B1298 N VAL B1286 LINK O3' DG D 813 P 2DA D 814 1555 1555 1.60 LINK O3' DC E 905 P ME6 E 906 1555 1555 1.59 LINK O3' ME6 E 906 P DC E 907 1555 1555 1.59 LINK O3' DG H1813 P 2DA H1814 1555 1555 1.60 LINK O3' DC J1905 P ME6 J1906 1555 1555 1.61 LINK O3' ME6 J1906 P DC J1907 1555 1555 1.60 LINK OD2 ASP A 7 CA CA A 415 1555 1555 3.09 LINK OD1 ASP A 7 CA CA A 415 1555 1555 3.14 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.31 LINK O PHE A 8 CA CA A 416 1555 1555 2.30 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.36 LINK OD2 ASP A 105 CA CA A 415 1555 1555 3.02 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.30 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.32 LINK O ALA A 181 CA CA A 417 1555 1555 2.32 LINK O ILE A 186 CA CA A 417 1555 1555 2.33 LINK O HOH A 343 CA CA A 417 1555 1555 2.35 LINK O HOH A 358 CA CA A 417 1555 1555 2.29 LINK O2A DGT A 414 CA CA A 415 1555 1555 2.32 LINK O2A DGT A 414 CA CA A 416 1555 1555 2.32 LINK O1B DGT A 414 CA CA A 416 1555 1555 2.33 LINK O2G DGT A 414 CA CA A 416 1555 1555 2.56 LINK CA CA A 415 O HOH D 65 1555 1555 2.45 LINK CA CA A 417 O HOH D 5 1555 1555 2.43 LINK CA CA A 417 O HOH D 40 1555 1555 2.35 LINK O HOH B 1 CA CA B1417 1555 1555 3.14 LINK O HOH B 6 CA CA B1415 1555 1555 2.66 LINK O HOH B 8 CA CA B1417 1555 1555 2.58 LINK O HOH B 9 CA CA B1417 1555 1555 2.52 LINK OD2 ASP B1007 CA CA B1415 1555 1555 2.34 LINK OD1 ASP B1007 CA CA B1415 1555 1555 3.04 LINK OD1 ASP B1007 CA CA B1416 1555 1555 2.31 LINK O PHE B1008 CA CA B1416 1555 1555 2.32 LINK OD1 ASP B1105 CA CA B1415 1555 1555 2.34 LINK OD2 ASP B1105 CA CA B1415 1555 1555 3.13 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.32 LINK OE2 GLU B1106 CA CA B1415 1555 1555 3.03 LINK O ALA B1181 CA CA B1417 1555 1555 2.32 LINK O ILE B1186 CA CA B1417 1555 1555 2.32 LINK O2A DGT B1414 CA CA B1415 1555 1555 2.33 LINK O2A DGT B1414 CA CA B1416 1555 1555 2.32 LINK O1B DGT B1414 CA CA B1416 1555 1555 2.32 LINK O3G DGT B1414 CA CA B1416 1555 1555 2.77 LINK O3B DGT B1414 CA CA B1416 1555 1555 3.05 LINK CA CA B1417 O HOH H 3 1555 1555 2.48 CISPEP 1 LYS A 159 PRO A 160 0 -1.00 SITE 1 AC1 17 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 17 TYR A 12 ALA A 44 THR A 45 TYR A 48 SITE 3 AC1 17 ARG A 51 ASP A 105 LYS A 159 HOH A 362 SITE 4 AC1 17 CA A 415 CA A 416 2DA D 814 DC E 905 SITE 5 AC1 17 ME6 E 906 SITE 1 AC2 10 SER A 103 ILE A 104 ARG A 240 HOH A 355 SITE 2 AC2 10 DA D 812 DG D 813 2DA D 814 DC E 907 SITE 3 AC2 10 DT E 908 DA E 909 SITE 1 AC3 7 ASP A 7 ASP A 105 GLU A 106 DGT A 414 SITE 2 AC3 7 CA A 416 HOH D 65 2DA D 814 SITE 1 AC4 5 ASP A 7 PHE A 8 ASP A 105 DGT A 414 SITE 2 AC4 5 CA A 415 SITE 1 AC5 6 ALA A 181 ILE A 186 HOH A 343 HOH A 358 SITE 2 AC5 6 HOH D 5 HOH D 40 SITE 1 AC6 18 ASP B1007 PHE B1008 TYR B1010 PHE B1011 SITE 2 AC6 18 TYR B1012 VAL B1032 ALA B1044 THR B1045 SITE 3 AC6 18 TYR B1048 ARG B1051 ASP B1105 LYS B1159 SITE 4 AC6 18 CA B1415 CA B1416 HOH H 31 2DA H1814 SITE 5 AC6 18 DC J1905 ME6 J1906 SITE 1 AC7 7 HOH B 6 ASP B1007 ASP B1105 GLU B1106 SITE 2 AC7 7 DGT B1414 CA B1416 2DA H1814 SITE 1 AC8 5 ASP B1007 PHE B1008 ASP B1105 DGT B1414 SITE 2 AC8 5 CA B1415 SITE 1 AC9 5 HOH B 8 HOH B 9 ALA B1181 ILE B1186 SITE 2 AC9 5 HOH H 3 CRYST1 52.915 109.328 100.828 90.00 101.07 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018898 0.000000 0.003697 0.00000 SCALE2 0.000000 0.009147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010106 0.00000