HEADER TRANSFERASE/DNA 29-MAR-11 3RBE TITLE DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER T BASE OPPOSITE TITLE 2 THE 3-METHYLCYTOSINE (M3C) LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3'); COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6) COMPND 14 P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'); COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA M3C-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC KEYWDS DNA DAMAGE, DNA REPAIR, DNA REPLICATION, DNA-BINDING, DNA-DIRECTED KEYWDS 2 DNA POLYMERASE, MAGNESIUM, METAL-BINDING, MUTATOR PROTEIN, KEYWDS 3 NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX, LESION KEYWDS 4 BYPASS, DNA POLYMERASE, Y-FAMILY POLYMERASE, DNTP-BINDING, 3- KEYWDS 5 METHYLCYTOSINE EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,D.J.PATEL REVDAT 3 13-SEP-23 3RBE 1 REMARK SEQADV LINK REVDAT 2 19-JUN-13 3RBE 1 JRNL VERSN REVDAT 1 15-JUN-11 3RBE 0 JRNL AUTH O.RECHKOBLIT,J.C.DELANEY,J.M.ESSIGMANN,D.J.PATEL JRNL TITL IMPLICATIONS FOR DAMAGE RECOGNITION DURING DPO4-MEDIATED JRNL TITL 2 MUTAGENIC BYPASS OF M1G AND M3C LESIONS. JRNL REF STRUCTURE V. 19 821 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21645853 JRNL DOI 10.1016/J.STR.2011.03.020 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 25336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 1052 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.30000 REMARK 3 B22 (A**2) : -1.61000 REMARK 3 B33 (A**2) : 5.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.394 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.345 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.771 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6814 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9377 ; 1.520 ; 2.198 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;36.237 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1120 ;19.367 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;20.324 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1074 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4596 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3409 ; 0.488 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5518 ; 0.739 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3405 ; 1.123 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3859 ; 1.936 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6970 1.4718 2.5656 REMARK 3 T TENSOR REMARK 3 T11: 0.0240 T22: 0.0708 REMARK 3 T33: 0.1353 T12: -0.0004 REMARK 3 T13: -0.0090 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 3.3277 L22: 2.4360 REMARK 3 L33: 1.4943 L12: -0.9400 REMARK 3 L13: -0.3963 L23: 0.4085 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: -0.2983 S13: -0.0063 REMARK 3 S21: 0.1633 S22: 0.1684 S23: 0.0136 REMARK 3 S31: 0.0210 S32: 0.1100 S33: -0.0664 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2350 56.7694 39.5619 REMARK 3 T TENSOR REMARK 3 T11: 0.6971 T22: 0.7006 REMARK 3 T33: 0.3284 T12: -0.1879 REMARK 3 T13: -0.0209 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 3.6617 L22: 1.7932 REMARK 3 L33: 4.8826 L12: 0.6447 REMARK 3 L13: -0.7325 L23: -2.2291 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: -0.6154 S13: -0.6487 REMARK 3 S21: 0.5544 S22: -0.1816 S23: -0.0951 REMARK 3 S31: -0.3765 S32: 0.1391 S33: 0.1333 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 802 D 814 REMARK 3 RESIDUE RANGE : E 901 E 919 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0577 -6.3705 12.6143 REMARK 3 T TENSOR REMARK 3 T11: 0.4726 T22: 0.6838 REMARK 3 T33: 0.3566 T12: 0.1014 REMARK 3 T13: -0.0746 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 2.7684 L22: 1.9227 REMARK 3 L33: 1.6300 L12: -1.1930 REMARK 3 L13: -0.1943 L23: 0.4092 REMARK 3 S TENSOR REMARK 3 S11: -0.5193 S12: -1.1908 S13: -0.1906 REMARK 3 S21: 0.8635 S22: 0.4731 S23: -0.2658 REMARK 3 S31: -0.0217 S32: 0.5335 S33: 0.0462 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1806 H 1814 REMARK 3 RESIDUE RANGE : J 1905 J 1914 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3094 47.2730 43.5474 REMARK 3 T TENSOR REMARK 3 T11: 0.6746 T22: 1.0498 REMARK 3 T33: 0.7400 T12: -0.1171 REMARK 3 T13: 0.0086 T23: 0.3144 REMARK 3 L TENSOR REMARK 3 L11: 14.4147 L22: 5.8917 REMARK 3 L33: 5.1139 L12: -0.4990 REMARK 3 L13: -4.1379 L23: -1.5784 REMARK 3 S TENSOR REMARK 3 S11: -0.5930 S12: -1.6542 S13: -2.4652 REMARK 3 S21: 0.8564 S22: -0.4664 S23: -0.1783 REMARK 3 S31: 0.3361 S32: 0.4910 S33: 1.0594 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3RAQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 100 MM CALCIUM REMARK 280 ACETATE AND 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.93000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 900 REMARK 465 DG H 1802 REMARK 465 DT H 1803 REMARK 465 DT H 1804 REMARK 465 DC J 1900 REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 465 DA J 1903 REMARK 465 DA J 1904 REMARK 465 DC J 1915 REMARK 465 DA J 1916 REMARK 465 DA J 1917 REMARK 465 DC J 1918 REMARK 465 DC J 1919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC E 901 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA E 904 O3' DA E 904 C3' -0.041 REMARK 500 DC E 907 O3' DC E 907 C3' -0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 803 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT D 804 O4' - C1' - N1 ANGL. DEV. = 7.0 DEGREES REMARK 500 DG D 805 C3' - C2' - C1' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG D 805 O4' - C1' - N9 ANGL. DEV. = 7.2 DEGREES REMARK 500 DG D 813 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 DG D 813 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC E 907 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT E 908 O4' - C1' - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC E 910 O5' - C5' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DT E 913 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 DC E 914 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC E 915 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA E 916 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA E 916 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DC E 918 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG H1805 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT H1808 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT H1811 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC J1910 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC J1911 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA J1912 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DT J1913 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 60.55 22.44 REMARK 500 GLU A 38 100.82 -36.68 REMARK 500 ALA A 71 -177.76 -67.82 REMARK 500 SER A 103 -168.73 -179.10 REMARK 500 LYS A 148 -61.57 -26.94 REMARK 500 ALA A 181 -7.51 -58.64 REMARK 500 MET A 216 -41.02 -159.40 REMARK 500 ASN A 234 43.13 -140.72 REMARK 500 ASP A 277 75.72 56.56 REMARK 500 TYR B1010 50.30 17.34 REMARK 500 PHE B1011 -81.49 -32.34 REMARK 500 ASN B1020 72.06 -156.31 REMARK 500 SER B1022 14.48 -65.99 REMARK 500 ASP B1039 -40.98 104.41 REMARK 500 ARG B1077 62.68 -103.37 REMARK 500 SER B1103 -171.96 -173.63 REMARK 500 SER B1112 -26.19 -149.50 REMARK 500 VAL B1115 115.31 29.10 REMARK 500 ASP B1117 126.12 -174.53 REMARK 500 GLU B1136 -14.44 -141.16 REMARK 500 LYS B1159 -106.42 16.19 REMARK 500 ASN B1161 16.23 54.64 REMARK 500 ILE B1163 65.68 -160.09 REMARK 500 GLU B1177 57.22 -147.17 REMARK 500 ASP B1182 21.75 -70.47 REMARK 500 LYS B1196 29.97 -69.61 REMARK 500 LEU B1197 -29.54 -144.06 REMARK 500 ASN B1200 -58.31 -124.12 REMARK 500 ASP B1231 -16.51 68.08 REMARK 500 GLU B1232 13.17 -67.19 REMARK 500 TYR B1233 90.87 -65.34 REMARK 500 ARG B1242 96.61 -57.11 REMARK 500 SER B1244 147.63 179.32 REMARK 500 LYS B1252 -39.10 -30.54 REMARK 500 ASP B1277 118.86 27.87 REMARK 500 LYS B1278 -43.93 66.99 REMARK 500 ASP B1292 44.26 -105.04 REMARK 500 ILE B1322 -39.29 -131.64 REMARK 500 ARG B1331 -74.75 -113.51 REMARK 500 LYS B1339 89.26 55.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 105 OD1 121.5 REMARK 620 3 ASP A 105 OD2 96.7 48.2 REMARK 620 4 GLU A 106 OE2 102.2 75.5 121.8 REMARK 620 5 DGT A 414 O2A 106.0 96.7 63.4 150.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 72.2 REMARK 620 3 ASP A 105 OD2 82.5 86.3 REMARK 620 4 DGT A 414 O1B 159.5 87.3 96.5 REMARK 620 5 DGT A 414 O2A 108.9 154.2 68.6 89.5 REMARK 620 6 DGT A 414 O1G 101.9 118.7 154.8 87.7 86.7 REMARK 620 7 DGT A 414 O3A 145.0 139.0 109.7 54.4 51.9 53.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 85.4 REMARK 620 3 HOH A 366 O 76.9 72.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 4 O REMARK 620 2 ALA B1181 O 86.8 REMARK 620 3 ILE B1186 O 104.1 81.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD1 REMARK 620 2 ASP B1007 OD2 44.1 REMARK 620 3 ASP B1105 OD1 94.8 138.5 REMARK 620 4 ASP B1105 OD2 55.5 98.5 44.3 REMARK 620 5 DGT B1414 O2A 90.3 101.6 80.1 64.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD1 REMARK 620 2 PHE B1008 O 86.8 REMARK 620 3 ASP B1105 OD2 70.6 81.3 REMARK 620 4 DGT B1414 O2A 97.1 157.9 79.6 REMARK 620 5 DGT B1414 O1B 148.9 100.8 80.7 65.3 REMARK 620 6 DGT B1414 O3B 153.3 84.8 132.7 100.2 57.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RB4 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER G BASE REMARK 900 OPPOSITE THE 3-METHYLCYTOSINE (M3C) LESION REMARK 900 RELATED ID: 3RB6 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER A BASE REMARK 900 OPPOSITE THE 3-METHYLCYTOSINE (M3C) LESION REMARK 900 RELATED ID: 3RBD RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER C BASE REMARK 900 OPPOSITE THE 3-METHYLCYTOSINE (M3C) LESION REMARK 900 RELATED ID: 3RAQ RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER C BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RAX RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER T BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RB0 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER G BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION DBREF 3RBE A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RBE B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RBE D 802 814 PDB 3RBE 3RBE 802 814 DBREF 3RBE H 1802 1814 PDB 3RBE 3RBE 1802 1814 DBREF 3RBE E 900 919 PDB 3RBE 3RBE 900 919 DBREF 3RBE J 1900 1919 PDB 3RBE 3RBE 1900 1919 SEQADV 3RBE GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3RBE GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 D 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DT SEQRES 1 E 20 DC DC DT DA DA DC ME6 DC DT DA DC DC DA SEQRES 2 E 20 DT DC DC DA DA DC DC SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 H 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DT SEQRES 1 J 20 DC DC DT DA DA DC ME6 DC DT DA DC DC DA SEQRES 2 J 20 DT DC DC DA DA DC DC MODRES 3RBE 2DT D 814 DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE MODRES 3RBE ME6 E 906 DC MODRES 3RBE 2DT H 1814 DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE MODRES 3RBE ME6 J 1906 DC HET 2DT D 814 19 HET ME6 E 906 20 HET 2DT H1814 19 HET ME6 J1906 20 HET DGT A 414 31 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET DGT B1414 31 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HETNAM 2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETNAM ME6 [(2R,3S,5R)-5-(4-AZANYL-3-METHYL-2-OXO-PYRIMIDIN-3-IUM- HETNAM 2 ME6 1-YL)-3-HYDROXY-OXOLAN-2-YL]METHYL DIHYDROGEN HETNAM 3 ME6 PHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETSYN 2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE FORMUL 2 2DT 2(C10 H15 N2 O7 P) FORMUL 3 ME6 2(C10 H17 N3 O7 P 1+) FORMUL 7 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 CA 6(CA 2+) FORMUL 15 HOH *37(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 ASN A 47 LYS A 52 1 6 HELIX 3 3 PRO A 60 LEU A 68 1 9 HELIX 4 4 ARG A 77 SER A 96 1 20 HELIX 5 5 ASP A 117 LYS A 137 1 21 HELIX 6 6 ASN A 147 MET A 157 1 11 HELIX 7 7 ASP A 167 LEU A 178 1 12 HELIX 8 8 ASP A 179 VAL A 183 5 5 HELIX 9 9 GLY A 187 GLY A 198 1 12 HELIX 10 10 LYS A 201 LEU A 206 5 6 HELIX 11 11 GLU A 209 GLY A 218 1 10 HELIX 12 12 GLY A 218 ARG A 230 1 13 HELIX 13 13 ASN A 257 ASP A 277 1 21 HELIX 14 14 SER A 307 ASP A 326 1 20 HELIX 15 15 TYR B 1010 ASN B 1020 1 11 HELIX 16 16 PRO B 1021 LYS B 1024 5 4 HELIX 17 17 ASN B 1047 PHE B 1053 1 7 HELIX 18 18 PRO B 1060 LEU B 1068 1 9 HELIX 19 19 ARG B 1077 GLU B 1094 1 18 HELIX 20 20 ASP B 1117 LYS B 1137 1 21 HELIX 21 21 ASN B 1147 ALA B 1158 1 12 HELIX 22 22 ASP B 1167 GLU B 1177 1 11 HELIX 23 23 GLY B 1187 LYS B 1195 1 9 HELIX 24 24 LYS B 1201 LEU B 1206 5 6 HELIX 25 25 GLU B 1209 GLY B 1218 1 10 HELIX 26 26 GLU B 1219 ARG B 1230 1 12 HELIX 27 27 ILE B 1261 ASP B 1277 1 17 HELIX 28 28 SER B 1307 LEU B 1319 1 13 SHEET 1 A 5 ILE A 99 ILE A 101 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O ILE A 330 N SER A 255 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 4 GLU B1100 ILE B1101 0 SHEET 2 D 4 GLU B1106 ILE B1111 -1 O TYR B1108 N GLU B1100 SHEET 3 D 4 ILE B1002 PHE B1008 -1 N LEU B1004 O LEU B1109 SHEET 4 D 4 VAL B1140 SER B1145 -1 O THR B1141 N ASP B1007 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1030 O THR B1045 SHEET 3 E 3 VAL B1072 PRO B1075 1 O LEU B1074 N VAL B1029 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 PHE B1340 -1 O PHE B1337 N ILE B1245 SHEET 3 F 4 PRO B1281 VAL B1289 -1 N HIS B1285 O ARG B1336 SHEET 4 F 4 ILE B1295 THR B1301 -1 O ARG B1298 N VAL B1286 LINK O3' DG D 813 P 2DT D 814 1555 1555 1.60 LINK O3' DC E 905 P ME6 E 906 1555 1555 1.60 LINK O3' ME6 E 906 P DC E 907 1555 1555 1.59 LINK O3' DG H1813 P 2DT H1814 1555 1555 1.61 LINK O3' DC J1905 P ME6 J1906 1555 1555 1.60 LINK O3' ME6 J1906 P DC J1907 1555 1555 1.61 LINK OD2 ASP A 7 CA CA A 415 1555 1555 2.40 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.29 LINK O PHE A 8 CA CA A 416 1555 1555 2.32 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.58 LINK OD2 ASP A 105 CA CA A 415 1555 1555 2.80 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.33 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.42 LINK O ALA A 181 CA CA A 417 1555 1555 2.33 LINK O ILE A 186 CA CA A 417 1555 1555 2.61 LINK O HOH A 366 CA CA A 417 1555 1555 2.42 LINK O2A DGT A 414 CA CA A 415 1555 1555 2.06 LINK O1B DGT A 414 CA CA A 416 1555 1555 2.33 LINK O2A DGT A 414 CA CA A 416 1555 1555 2.34 LINK O1G DGT A 414 CA CA A 416 1555 1555 2.48 LINK O3A DGT A 414 CA CA A 416 1555 1555 3.19 LINK O HOH B 4 CA CA B1417 1555 1555 2.59 LINK OD1 ASP B1007 CA CA B1415 1555 1555 2.59 LINK OD2 ASP B1007 CA CA B1415 1555 1555 3.09 LINK OD1 ASP B1007 CA CA B1416 1555 1555 2.33 LINK O PHE B1008 CA CA B1416 1555 1555 2.32 LINK OD1 ASP B1105 CA CA B1415 1555 1555 2.53 LINK OD2 ASP B1105 CA CA B1415 1555 1555 3.09 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.32 LINK O ALA B1181 CA CA B1417 1555 1555 2.32 LINK O ILE B1186 CA CA B1417 1555 1555 2.69 LINK O2A DGT B1414 CA CA B1415 1555 1555 2.31 LINK O2A DGT B1414 CA CA B1416 1555 1555 2.31 LINK O1B DGT B1414 CA CA B1416 1555 1555 2.33 LINK O3B DGT B1414 CA CA B1416 1555 1555 2.72 CISPEP 1 LYS A 159 PRO A 160 0 -3.72 SITE 1 AC1 17 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 17 TYR A 12 VAL A 32 ALA A 44 THR A 45 SITE 3 AC1 17 TYR A 48 ARG A 51 ASP A 105 LYS A 159 SITE 4 AC1 17 CA A 415 CA A 416 2DT D 814 DC E 905 SITE 5 AC1 17 ME6 E 906 SITE 1 AC2 6 ASP A 7 ASP A 105 GLU A 106 DGT A 414 SITE 2 AC2 6 CA A 416 2DT D 814 SITE 1 AC3 5 ASP A 7 PHE A 8 ASP A 105 DGT A 414 SITE 2 AC3 5 CA A 415 SITE 1 AC4 3 ALA A 181 ILE A 186 HOH A 366 SITE 1 AC5 17 HOH B 2 ASP B1007 PHE B1008 TYR B1010 SITE 2 AC5 17 PHE B1011 TYR B1012 ALA B1044 THR B1045 SITE 3 AC5 17 TYR B1048 ARG B1051 ALA B1057 ASP B1105 SITE 4 AC5 17 CA B1415 CA B1416 2DT H1814 DC J1905 SITE 5 AC5 17 ME6 J1906 SITE 1 AC6 5 ASP B1007 ASP B1105 GLU B1106 DGT B1414 SITE 2 AC6 5 CA B1416 SITE 1 AC7 5 ASP B1007 PHE B1008 ASP B1105 DGT B1414 SITE 2 AC7 5 CA B1415 SITE 1 AC8 3 HOH B 4 ALA B1181 ILE B1186 CRYST1 52.904 109.860 101.291 90.00 100.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018902 0.000000 0.003671 0.00000 SCALE2 0.000000 0.009102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010057 0.00000