HEADER SUGAR BINDING PROTEIN 30-MAR-11 3RC1 TITLE CRYSTAL STRUCTURE OF KIJD10, A 3-KETOREDUCTASE FROM ACTINOMADURA TITLE 2 KIJANIATA INCOMPLEX WITH NADP AND TDP-BENZENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR 3-KETOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOMADURA KIJANIATA; SOURCE 3 ORGANISM_TAXID: 46161; SOURCE 4 GENE: KIJD10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS SUGAR BIOSYNTHESIS, KETOREDUCTASE, TDP BINDING, NADP BINDING, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.M.HOLDEN,R.L.KUBIAK REVDAT 4 13-SEP-23 3RC1 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3RC1 1 JRNL REVDAT 2 22-JUN-11 3RC1 1 JRNL REVDAT 1 08-JUN-11 3RC1 0 JRNL AUTH R.L.KUBIAK,H.M.HOLDEN JRNL TITL COMBINED STRUCTURAL AND FUNCTIONAL INVESTIGATION OF A JRNL TITL 2 C-3''-KETOREDUCTASE INVOLVED IN THE BIOSYNTHESIS OF JRNL TITL 3 DTDP-L-DIGITOXOSE. JRNL REF BIOCHEMISTRY V. 50 5905 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21598943 JRNL DOI 10.1021/BI200514B REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 56605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4013 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 232 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2742 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3746 ; 2.362 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.315 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;39.481 ;22.409 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;13.386 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.879 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.179 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2144 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1629 ; 1.939 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2618 ; 2.773 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1113 ; 4.308 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1125 ; 6.231 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NICKEL FILTER REMARK 200 OPTICS : MONTEL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59618 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 84.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64300 REMARK 200 R SYM FOR SHELL (I) : 0.64300 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODEL GENERATED FROM BINARY STRUCTURE, PDB ENTRY REMARK 200 3RBV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM/POTASSIUM PHOSPHATE, 100 REMARK 280 MM HEPPS, 5 MM NADP, 5 MM TDP-BENZENE, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.41300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.07700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.64150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.41300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.07700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.64150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.41300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.07700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.64150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.41300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.07700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.64150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 ASN A 6 REMARK 465 ALA A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 465 O HOH A 673 1.85 REMARK 500 OD1 ASP A 182 O HOH A 702 2.10 REMARK 500 OE2 GLU A 30 O HOH A 348 2.12 REMARK 500 O HOH A 452 O HOH A 531 2.15 REMARK 500 O HOH A 379 O HOH A 710 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 293 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 293 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 24 -55.67 -121.52 REMARK 500 PRO A 78 36.77 -94.48 REMARK 500 THR A 105 -145.09 -146.83 REMARK 500 VAL A 175 -80.32 -133.96 REMARK 500 ASN A 242 81.64 -157.80 REMARK 500 ASP A 275 16.78 59.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 336 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 323 O REMARK 620 2 THR A 324 O 78.5 REMARK 620 3 ALA A 326 O 108.6 95.0 REMARK 620 4 ASP A 328 OD2 109.1 172.3 81.4 REMARK 620 5 HOH A 473 O 87.9 89.7 163.4 91.9 REMARK 620 6 HOH A 678 O 156.8 78.5 71.3 93.9 94.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLO A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 339 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RBV RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN BINARY FORM, COMPLEXED ONLY WITH NADP REMARK 900 RELATED ID: 3RC2 RELATED DB: PDB REMARK 900 RELATED ID: 3RC7 RELATED DB: PDB REMARK 900 RELATED ID: 3RC9 RELATED DB: PDB REMARK 900 RELATED ID: 3RCB RELATED DB: PDB DBREF 3RC1 A 1 332 UNP B3TMR8 B3TMR8_9ACTO 1 332 SEQADV 3RC1 MET A -17 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 GLY A -16 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 SER A -15 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 SER A -14 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 HIS A -13 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 HIS A -12 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 HIS A -11 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 HIS A -10 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 HIS A -9 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 HIS A -8 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 GLU A -7 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 ASN A -6 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 LEU A -5 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 TYR A -4 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 PHE A -3 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 GLN A -2 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 GLY A -1 UNP B3TMR8 EXPRESSION TAG SEQADV 3RC1 HIS A 0 UNP B3TMR8 EXPRESSION TAG SEQRES 1 A 350 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 A 350 TYR PHE GLN GLY HIS MET GLU ASN PRO ALA ASN ALA ASN SEQRES 3 A 350 PRO ILE ARG VAL GLY VAL ILE GLY CYS ALA ASP ILE ALA SEQRES 4 A 350 TRP ARG ARG ALA LEU PRO ALA LEU GLU ALA GLU PRO LEU SEQRES 5 A 350 THR GLU VAL THR ALA ILE ALA SER ARG ARG TRP ASP ARG SEQRES 6 A 350 ALA LYS ARG PHE THR GLU ARG PHE GLY GLY GLU PRO VAL SEQRES 7 A 350 GLU GLY TYR PRO ALA LEU LEU GLU ARG ASP ASP VAL ASP SEQRES 8 A 350 ALA VAL TYR VAL PRO LEU PRO ALA VAL LEU HIS ALA GLU SEQRES 9 A 350 TRP ILE ASP ARG ALA LEU ARG ALA GLY LYS HIS VAL LEU SEQRES 10 A 350 ALA GLU LYS PRO LEU THR THR ASP ARG PRO GLN ALA GLU SEQRES 11 A 350 ARG LEU PHE ALA VAL ALA ARG GLU ARG GLY LEU LEU LEU SEQRES 12 A 350 MET GLU ASN PHE MET PHE LEU HIS HIS PRO GLN HIS ARG SEQRES 13 A 350 GLN VAL ALA ASP MET LEU ASP GLU GLY VAL ILE GLY GLU SEQRES 14 A 350 ILE ARG SER PHE ALA ALA SER PHE THR ILE PRO PRO LYS SEQRES 15 A 350 PRO GLN GLY ASP ILE ARG TYR GLN ALA ASP VAL GLY GLY SEQRES 16 A 350 GLY ALA LEU LEU ASP ILE GLY VAL TYR PRO ILE ARG ALA SEQRES 17 A 350 ALA GLY LEU PHE LEU GLY ALA ASP LEU GLU PHE VAL GLY SEQRES 18 A 350 ALA VAL LEU ARG HIS GLU ARG ASP ARG ASP VAL VAL VAL SEQRES 19 A 350 GLY GLY ASN ALA LEU LEU THR THR ARG GLN GLY VAL THR SEQRES 20 A 350 ALA GLN LEU THR PHE GLY MET GLU HIS ALA TYR THR ASN SEQRES 21 A 350 ASN TYR GLU PHE ARG GLY SER THR GLY ARG LEU TRP MET SEQRES 22 A 350 ASN ARG VAL PHE THR PRO PRO ALA THR TYR GLN PRO VAL SEQRES 23 A 350 VAL HIS ILE GLU ARG GLN ASP HIS ALA GLU GLN PHE VAL SEQRES 24 A 350 LEU PRO ALA HIS ASP GLN PHE ALA LYS SER ILE ARG ALA SEQRES 25 A 350 PHE ALA GLN ALA VAL LEU SER GLY GLU HIS PRO ARG GLU SEQRES 26 A 350 TRP SER GLU ASP SER LEU ARG GLN ALA SER LEU VAL ASP SEQRES 27 A 350 ALA VAL ARG THR GLY ALA ARG ASP ILE TYR PHE PRO HET PO4 A 333 5 HET TLO A 334 31 HET NAP A 335 48 HET NA A 336 1 HET EDO A 337 4 HET CL A 338 1 HET CL A 339 1 HETNAM PO4 PHOSPHATE ION HETNAM TLO 5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHENOXY) HETNAM 2 TLO PHOSPHORYL]OXY}PHOSPHORYL]THYMIDINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN TLO THYMIDINE DIPHOSPHATE PHENOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PO4 O4 P 3- FORMUL 3 TLO C16 H20 N2 O11 P2 FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 NA NA 1+ FORMUL 6 EDO C2 H6 O2 FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *377(H2 O) HELIX 1 1 ALA A 18 ARG A 24 1 7 HELIX 2 2 ARG A 24 GLU A 32 1 9 HELIX 3 3 ARG A 44 GLY A 56 1 13 HELIX 4 4 GLY A 62 GLU A 68 1 7 HELIX 5 5 PRO A 80 VAL A 82 5 3 HELIX 6 6 LEU A 83 ALA A 94 1 12 HELIX 7 7 ASP A 107 ARG A 121 1 15 HELIX 8 8 PHE A 129 HIS A 134 5 6 HELIX 9 9 PRO A 135 GLU A 146 1 12 HELIX 10 10 ASP A 168 GLN A 172 5 5 HELIX 11 11 GLY A 177 ILE A 183 1 7 HELIX 12 12 GLY A 184 GLY A 196 1 13 HELIX 13 13 ASP A 286 GLY A 302 1 17 HELIX 14 14 PRO A 305 ALA A 326 1 22 SHEET 1 A 6 GLU A 58 GLU A 61 0 SHEET 2 A 6 THR A 35 SER A 42 1 N ILE A 40 O VAL A 60 SHEET 3 A 6 ILE A 10 ILE A 15 1 N ILE A 10 O GLU A 36 SHEET 4 A 6 ALA A 74 VAL A 77 1 O TYR A 76 N ILE A 15 SHEET 5 A 6 HIS A 97 GLU A 101 1 O LEU A 99 N VAL A 77 SHEET 6 A 6 LEU A 125 ASN A 128 1 O MET A 126 N ALA A 100 SHEET 1 B 9 HIS A 276 VAL A 281 0 SHEET 2 B 9 VAL A 268 ARG A 273 -1 N ARG A 273 O HIS A 276 SHEET 3 B 9 ARG A 252 ASN A 256 -1 N TRP A 254 O HIS A 270 SHEET 4 B 9 THR A 241 GLY A 248 -1 N PHE A 246 O LEU A 253 SHEET 5 B 9 ILE A 152 THR A 160 -1 N ARG A 153 O ARG A 247 SHEET 6 B 9 THR A 229 GLY A 235 1 O THR A 233 N ALA A 157 SHEET 7 B 9 VAL A 214 THR A 223 -1 N ALA A 220 O LEU A 232 SHEET 8 B 9 GLU A 200 GLU A 209 -1 N GLY A 203 O LEU A 221 SHEET 9 B 9 ARG A 327 PHE A 331 1 O ILE A 329 N HIS A 208 LINK O ARG A 323 NA NA A 336 1555 1555 2.96 LINK O THR A 324 NA NA A 336 1555 1555 2.96 LINK O ALA A 326 NA NA A 336 1555 1555 2.76 LINK OD2 ASP A 328 NA NA A 336 1555 1555 2.74 LINK NA NA A 336 O HOH A 473 1555 1555 2.90 LINK NA NA A 336 O HOH A 678 1555 1555 2.64 CISPEP 1 LYS A 102 PRO A 103 0 -15.37 CISPEP 2 PHE A 331 PRO A 332 0 0.61 SITE 1 AC1 3 HIS A 285 LYS A 290 HOH A 591 SITE 1 AC2 18 ARG A 23 ARG A 24 PHE A 159 ILE A 161 SITE 2 AC2 18 PRO A 162 LYS A 164 TYR A 240 THR A 260 SITE 3 AC2 18 GLN A 274 NAP A 335 HOH A 424 HOH A 428 SITE 4 AC2 18 HOH A 620 HOH A 641 HOH A 652 HOH A 660 SITE 5 AC2 18 HOH A 661 HOH A 662 SITE 1 AC3 34 GLY A 16 CYS A 17 ALA A 18 ASP A 19 SITE 2 AC3 34 ILE A 20 SER A 42 ARG A 43 ARG A 47 SITE 3 AC3 34 TYR A 63 PRO A 78 LEU A 79 PRO A 80 SITE 4 AC3 34 LEU A 83 HIS A 84 GLU A 101 LYS A 102 SITE 5 AC3 34 ASN A 128 MET A 130 ILE A 169 ARG A 170 SITE 6 AC3 34 VAL A 175 ASP A 182 TYR A 186 TLO A 334 SITE 7 AC3 34 CL A 338 HOH A 398 HOH A 411 HOH A 412 SITE 8 AC3 34 HOH A 413 HOH A 414 HOH A 442 HOH A 605 SITE 9 AC3 34 HOH A 620 HOH A 674 SITE 1 AC4 6 ARG A 323 THR A 324 ALA A 326 ASP A 328 SITE 2 AC4 6 HOH A 473 HOH A 678 SITE 1 AC5 8 ARG A 43 GLY A 62 TYR A 63 PRO A 64 SITE 2 AC5 8 TRP A 87 GLU A 303 HOH A 368 HOH A 379 SITE 1 AC6 4 MET A 130 PHE A 131 NAP A 335 HOH A 450 SITE 1 AC7 2 ASN A 256 HIS A 270 CRYST1 72.826 104.154 145.283 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006883 0.00000