HEADER HYDROLASE 01-APR-11 3RD7 TITLE CRYSTAL STRUCTURE OF ACYL-COA THIOESTERASE FROM MYCOBACTERIUM AVIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA THIOESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 STRAIN: 104; SOURCE 5 GENE: MAV_2540; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS ACYL-COA THIOESTERASE, MYCOBACTERIUM AVIUM, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3RD7 1 REMARK SEQADV REVDAT 2 22-APR-15 3RD7 1 JRNL VERSN REVDAT 1 08-JUN-11 3RD7 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 42023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2152 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2786 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.671 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4326 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2837 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5933 ; 1.464 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6898 ; 0.877 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 563 ; 5.946 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;33.907 ;22.732 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 635 ;12.581 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;16.409 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 693 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4896 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 902 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2782 ; 0.832 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1105 ; 0.215 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4488 ; 1.505 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1544 ; 2.212 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1438 ; 3.474 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 281 REMARK 3 RESIDUE RANGE : A 300 A 301 REMARK 3 RESIDUE RANGE : A 285 A 521 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7320 21.0150 48.3210 REMARK 3 T TENSOR REMARK 3 T11: 0.0270 T22: 0.0740 REMARK 3 T33: 0.0403 T12: -0.0105 REMARK 3 T13: -0.0203 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.7914 L22: 1.0397 REMARK 3 L33: 0.7767 L12: -0.0849 REMARK 3 L13: -0.3696 L23: 0.1445 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: 0.0344 S13: -0.0096 REMARK 3 S21: -0.0680 S22: 0.0471 S23: -0.0428 REMARK 3 S31: -0.0288 S32: 0.0341 S33: 0.0060 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 282 REMARK 3 RESIDUE RANGE : B 285 B 439 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9470 18.6460 72.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.1342 REMARK 3 T33: 0.0098 T12: 0.0176 REMARK 3 T13: 0.0150 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.6370 L22: 1.2164 REMARK 3 L33: 1.4059 L12: -0.0344 REMARK 3 L13: -0.2441 L23: -0.0488 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: -0.2145 S13: -0.0245 REMARK 3 S21: 0.1892 S22: 0.0665 S23: 0.0752 REMARK 3 S31: 0.0310 S32: -0.1011 S33: -0.0074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3RD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42081 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 22.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : 0.36100 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB DEPOSITION 1C8U MODIFIED WITH CCP4 PROGRAM REMARK 200 CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MMM HEPES PH 7.0, 35% PEG 3350; REMARK 280 MYAVA.00458.A.A1 PS00622 AT 60MG/ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.40000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY A 144 REMARK 465 ASP A 145 REMARK 465 TRP A 146 REMARK 465 TRP A 147 REMARK 465 PRO A 148 REMARK 465 GLN A 149 REMARK 465 GLN A 282 REMARK 465 ARG A 283 REMARK 465 GLN A 284 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY B 144 REMARK 465 ASP B 145 REMARK 465 TRP B 146 REMARK 465 TRP B 147 REMARK 465 PRO B 148 REMARK 465 GLN B 149 REMARK 465 ARG B 283 REMARK 465 GLN B 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ILE A 110 CG1 CG2 CD1 REMARK 470 ASP A 112 CG OD1 OD2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 ASN B 31 CG OD1 ND2 REMARK 470 HIS B 33 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 119 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 129 CG1 CG2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 ARG B 151 CG CD NE CZ NH1 NH2 REMARK 470 SER B 169 OG REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 GLU B 281 CG CD OE1 OE2 REMARK 470 GLN B 282 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 351 O HOH B 349 2.08 REMARK 500 OG SER A 88 O HOH A 365 2.10 REMARK 500 NH2 ARG B 54 O GLY B 83 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 113 -156.66 -155.74 REMARK 500 SER A 250 142.13 -170.19 REMARK 500 ARG A 254 -2.05 80.47 REMARK 500 HIS B 32 18.64 59.53 REMARK 500 THR B 85 -69.91 -121.95 REMARK 500 ASP B 113 -162.28 -167.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYAVA.00458.A RELATED DB: TARGETDB DBREF 3RD7 A 1 284 UNP A0QFP4 A0QFP4_MYCA1 1 284 DBREF 3RD7 B 1 284 UNP A0QFP4 A0QFP4_MYCA1 1 284 SEQADV 3RD7 GLY A -1 UNP A0QFP4 EXPRESSION TAG SEQADV 3RD7 SER A 0 UNP A0QFP4 EXPRESSION TAG SEQADV 3RD7 GLY B -1 UNP A0QFP4 EXPRESSION TAG SEQADV 3RD7 SER B 0 UNP A0QFP4 EXPRESSION TAG SEQRES 1 A 286 GLY SER MET ILE SER THR LEU GLU ASP VAL LEU SER LEU SEQRES 2 A 286 LEU ASP LEU GLN GLN ILE ASP ASP ALA ALA PHE VAL GLY SEQRES 3 A 286 THR GLN PRO ASP THR PRO ASN HIS HIS ILE ILE GLY SER SEQRES 4 A 286 GLN VAL ALA ALA GLN ALA LEU MET ALA ALA GLY ARG THR SEQRES 5 A 286 THR PRO GLY ARG LEU ALA HIS SER MET HIS MET TYR PHE SEQRES 6 A 286 LEU ARG ARG GLY ASP ALA ARG GLN PRO ILE GLN TYR ASP SEQRES 7 A 286 VAL THR PRO LEU ARG ASP GLY GLY THR ILE SER SER ARG SEQRES 8 A 286 ARG VAL THR ALA SER GLN SER GLY VAL VAL LEU PHE GLU SEQRES 9 A 286 ALA LEU ALA SER PHE THR ILE ILE ALA ASP ASP VAL ASP SEQRES 10 A 286 TRP GLN GLN ARG MET PRO ASP VAL ALA GLY PRO SER ALA SEQRES 11 A 286 VAL HIS GLY LEU GLU ASP LEU LEU ALA PRO TYR ALA GLU SEQRES 12 A 286 GLU PHE GLY ASP TRP TRP PRO GLN GLN ARG PRO PHE THR SEQRES 13 A 286 MET ARG TYR LEU ASP ALA PRO PRO ARG VAL ALA LEU ASP SEQRES 14 A 286 LEU SER ASP PRO PRO PRO PRO ARG LEU ARG ILE TRP LEU SEQRES 15 A 286 ARG ALA ASN GLY GLU VAL THR ASP ASP PRO LEU VAL ASN SEQRES 16 A 286 SER CYS VAL VAL ALA TYR LEU SER ALA LEU THR LEU LEU SEQRES 17 A 286 GLU CYS VAL MET THR THR MET ARG THR THR PRO VAL GLY SEQRES 18 A 286 PRO ARG LEU SER ALA LEU VAL ASP HIS THR ILE TRP PHE SEQRES 19 A 286 HIS ARG ALA ALA ASP PHE THR ASP TRP LEU LEU PHE ASP SEQRES 20 A 286 GLN PHE SER PRO SER ILE VAL GLY ARG ARG GLY LEU ALA SEQRES 21 A 286 THR GLY THR LEU TYR ASN ARG SER GLY GLU LEU VAL CYS SEQRES 22 A 286 ILE ALA THR GLN GLU GLY TYR PHE ALA GLU GLN ARG GLN SEQRES 1 B 286 GLY SER MET ILE SER THR LEU GLU ASP VAL LEU SER LEU SEQRES 2 B 286 LEU ASP LEU GLN GLN ILE ASP ASP ALA ALA PHE VAL GLY SEQRES 3 B 286 THR GLN PRO ASP THR PRO ASN HIS HIS ILE ILE GLY SER SEQRES 4 B 286 GLN VAL ALA ALA GLN ALA LEU MET ALA ALA GLY ARG THR SEQRES 5 B 286 THR PRO GLY ARG LEU ALA HIS SER MET HIS MET TYR PHE SEQRES 6 B 286 LEU ARG ARG GLY ASP ALA ARG GLN PRO ILE GLN TYR ASP SEQRES 7 B 286 VAL THR PRO LEU ARG ASP GLY GLY THR ILE SER SER ARG SEQRES 8 B 286 ARG VAL THR ALA SER GLN SER GLY VAL VAL LEU PHE GLU SEQRES 9 B 286 ALA LEU ALA SER PHE THR ILE ILE ALA ASP ASP VAL ASP SEQRES 10 B 286 TRP GLN GLN ARG MET PRO ASP VAL ALA GLY PRO SER ALA SEQRES 11 B 286 VAL HIS GLY LEU GLU ASP LEU LEU ALA PRO TYR ALA GLU SEQRES 12 B 286 GLU PHE GLY ASP TRP TRP PRO GLN GLN ARG PRO PHE THR SEQRES 13 B 286 MET ARG TYR LEU ASP ALA PRO PRO ARG VAL ALA LEU ASP SEQRES 14 B 286 LEU SER ASP PRO PRO PRO PRO ARG LEU ARG ILE TRP LEU SEQRES 15 B 286 ARG ALA ASN GLY GLU VAL THR ASP ASP PRO LEU VAL ASN SEQRES 16 B 286 SER CYS VAL VAL ALA TYR LEU SER ALA LEU THR LEU LEU SEQRES 17 B 286 GLU CYS VAL MET THR THR MET ARG THR THR PRO VAL GLY SEQRES 18 B 286 PRO ARG LEU SER ALA LEU VAL ASP HIS THR ILE TRP PHE SEQRES 19 B 286 HIS ARG ALA ALA ASP PHE THR ASP TRP LEU LEU PHE ASP SEQRES 20 B 286 GLN PHE SER PRO SER ILE VAL GLY ARG ARG GLY LEU ALA SEQRES 21 B 286 THR GLY THR LEU TYR ASN ARG SER GLY GLU LEU VAL CYS SEQRES 22 B 286 ILE ALA THR GLN GLU GLY TYR PHE ALA GLU GLN ARG GLN HET CL A 300 1 HET CL A 301 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *390(H2 O) HELIX 1 1 THR A 4 LEU A 12 1 9 HELIX 2 2 ILE A 35 THR A 50 1 16 HELIX 3 3 GLY A 125 VAL A 129 5 5 HELIX 4 4 GLY A 131 ALA A 137 1 7 HELIX 5 5 PRO A 138 PHE A 143 5 6 HELIX 6 6 PRO A 161 LEU A 166 1 6 HELIX 7 7 ASP A 189 THR A 204 1 16 HELIX 8 8 LEU A 206 MET A 213 1 8 HELIX 9 9 THR B 4 LEU B 12 1 9 HELIX 10 10 ILE B 35 THR B 50 1 16 HELIX 11 11 GLY B 125 VAL B 129 5 5 HELIX 12 12 GLY B 131 ALA B 137 1 7 HELIX 13 13 PRO B 138 PHE B 143 5 6 HELIX 14 14 PRO B 161 ASP B 167 1 7 HELIX 15 15 ASP B 189 THR B 204 1 16 HELIX 16 16 LEU B 206 MET B 213 1 8 SHEET 1 A11 GLN A 15 ASP A 18 0 SHEET 2 A11 ALA A 21 GLY A 24 -1 O ALA A 21 N ILE A 17 SHEET 3 A11 ILE A 73 ASP A 82 -1 O TYR A 75 N PHE A 22 SHEET 4 A11 ILE A 86 GLN A 95 -1 O SER A 88 N LEU A 80 SHEET 5 A11 VAL A 98 THR A 108 -1 O LEU A 100 N ALA A 93 SHEET 6 A11 LEU A 55 PHE A 63 -1 N HIS A 60 O LEU A 104 SHEET 7 A11 ASP A 227 PHE A 232 -1 O HIS A 228 N MET A 61 SHEET 8 A11 LEU A 269 PHE A 279 -1 O ILE A 272 N TRP A 231 SHEET 9 A11 ARG A 255 ASN A 264 -1 N GLY A 260 O ALA A 273 SHEET 10 A11 LEU A 242 VAL A 252 -1 N ASP A 245 O THR A 261 SHEET 11 A11 SER A 223 LEU A 225 0 SHEET 1 B 6 PHE A 153 TYR A 157 0 SHEET 2 B 6 ARG A 175 ALA A 182 -1 O TRP A 179 N ARG A 156 SHEET 3 B 6 LEU A 242 VAL A 252 -1 O LEU A 242 N LEU A 180 SHEET 4 B 6 ARG A 255 ASN A 264 -1 O THR A 261 N ASP A 245 SHEET 5 B 6 LEU A 269 PHE A 279 -1 O ALA A 273 N GLY A 260 SHEET 6 B 6 TRP B 116 GLN B 117 0 SHEET 1 C 6 TRP A 116 GLN A 117 0 SHEET 2 C 6 LEU B 242 VAL B 252 -1 O ILE B 251 N TRP A 116 SHEET 3 C 6 ARG B 255 ASN B 264 -1 O THR B 259 N PHE B 247 SHEET 4 C 6 LEU B 269 PHE B 279 -1 O VAL B 270 N LEU B 262 SHEET 5 C 6 ARG B 175 ALA B 182 0 SHEET 6 C 6 PHE B 153 TYR B 157 -1 N THR B 154 O ARG B 181 SHEET 1 D11 GLN B 15 ASP B 18 0 SHEET 2 D11 ALA B 21 GLY B 24 -1 O VAL B 23 N GLN B 15 SHEET 3 D11 ILE B 73 ARG B 81 -1 O TYR B 75 N PHE B 22 SHEET 4 D11 ILE B 86 GLN B 95 -1 O SER B 94 N GLN B 74 SHEET 5 D11 VAL B 98 THR B 108 -1 O ALA B 103 N VAL B 91 SHEET 6 D11 LEU B 55 PHE B 63 -1 N HIS B 57 O SER B 106 SHEET 7 D11 ASP B 227 PHE B 232 -1 O HIS B 228 N MET B 61 SHEET 8 D11 LEU B 269 PHE B 279 -1 O ILE B 272 N TRP B 231 SHEET 9 D11 ARG B 255 ASN B 264 -1 N LEU B 262 O VAL B 270 SHEET 10 D11 LEU B 242 VAL B 252 -1 N PHE B 247 O THR B 259 SHEET 11 D11 SER B 223 LEU B 225 0 CISPEP 1 GLY A 219 PRO A 220 0 13.04 CISPEP 2 GLY B 219 PRO B 220 0 5.01 SITE 1 AC1 3 ARG A 81 THR A 85 ILE A 86 CRYST1 57.750 62.800 82.220 90.00 99.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017316 0.000000 0.003027 0.00000 SCALE2 0.000000 0.015924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012347 0.00000