HEADER SIGNALING PROTEIN/INHIBITOR 01-APR-11 3RDH TITLE X-RAY INDUCED COVALENT INHIBITION OF 14-3-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN ZETA/DELTA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PROTEIN KINASE C INHIBITOR PROTEIN 1, KCIP-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YWHAZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOSER/THR-MIMETIC AGENT, PHOSPHOSERINE/THREONINE-RECOGNITION KEYWDS 2 PROTEIN, SIGNALING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,A.K.UPADHYAY,H.FU,X.CHENG REVDAT 4 20-NOV-24 3RDH 1 REMARK REVDAT 3 13-SEP-23 3RDH 1 REMARK SEQADV LINK REVDAT 2 12-OCT-11 3RDH 1 JRNL REVDAT 1 28-SEP-11 3RDH 0 JRNL AUTH J.ZHAO,Y.DU,J.R.HORTON,A.K.UPADHYAY,B.LOU,Y.BAI,X.ZHANG, JRNL AUTH 2 L.DU,M.LI,B.WANG,L.ZHANG,J.T.BARBIERI,F.R.KHURI,X.CHENG,H.FU JRNL TITL DISCOVERY AND STRUCTURAL CHARACTERIZATION OF A SMALL JRNL TITL 2 MOLECULE 14-3-3 PROTEIN-PROTEIN INTERACTION INHIBITOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 16212 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21908710 JRNL DOI 10.1073/PNAS.1100012108 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 301274.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 44678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2230 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3741 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 203 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7279 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.13600 REMARK 3 B22 (A**2) : -9.13700 REMARK 3 B33 (A**2) : 18.27300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 35.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 17.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.090 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.070 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 60.91 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 33.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 2O02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 100 MM TRIS-HCL PH 8.5, REMARK 280 10 MM MGCL2, 1 MM NICL2, 1% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 158.57467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.28733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.93100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.64367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 198.21833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 231 REMARK 465 THR A 232 REMARK 465 GLN A 233 REMARK 465 GLY A 234 REMARK 465 ASP A 235 REMARK 465 GLU A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 ALA A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 GLY A 242 REMARK 465 GLY A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 245 REMARK 465 ASP B 231 REMARK 465 THR B 232 REMARK 465 GLN B 233 REMARK 465 GLY B 234 REMARK 465 ASP B 235 REMARK 465 GLU B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 ALA B 239 REMARK 465 GLY B 240 REMARK 465 GLU B 241 REMARK 465 GLY B 242 REMARK 465 GLY B 243 REMARK 465 GLU B 244 REMARK 465 ASN B 245 REMARK 465 ASP C 231 REMARK 465 THR C 232 REMARK 465 GLN C 233 REMARK 465 GLY C 234 REMARK 465 ASP C 235 REMARK 465 GLU C 236 REMARK 465 ALA C 237 REMARK 465 GLU C 238 REMARK 465 ALA C 239 REMARK 465 GLY C 240 REMARK 465 GLU C 241 REMARK 465 GLY C 242 REMARK 465 GLY C 243 REMARK 465 GLU C 244 REMARK 465 ASN C 245 REMARK 465 ASP D 231 REMARK 465 THR D 232 REMARK 465 GLN D 233 REMARK 465 GLY D 234 REMARK 465 ASP D 235 REMARK 465 GLU D 236 REMARK 465 ALA D 237 REMARK 465 GLU D 238 REMARK 465 ALA D 239 REMARK 465 GLY D 240 REMARK 465 GLU D 241 REMARK 465 GLY D 242 REMARK 465 GLY D 243 REMARK 465 GLU D 244 REMARK 465 ASN D 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 69 OG1 CG2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 THR B 69 OG1 CG2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 ILE B 200 CG1 CG2 CD1 REMARK 470 LEU B 206 CG CD1 CD2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 ASP B 213 CG OD1 OD2 REMARK 470 LEU B 216 CG CD1 CD2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 227 CG CD1 CD2 REMARK 470 GLN C 67 CG CD OE1 NE2 REMARK 470 LYS C 68 CG CD CE NZ REMARK 470 GLU C 70 CG CD OE1 OE2 REMARK 470 LYS C 75 CG CD CE NZ REMARK 470 GLN C 76 CG CD OE1 NE2 REMARK 470 LEU C 203 CG CD1 CD2 REMARK 470 LEU C 206 CG CD1 CD2 REMARK 470 SER C 207 OG REMARK 470 GLU C 209 CG CD OE1 OE2 REMARK 470 TYR C 211 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 212 CG CD CE NZ REMARK 470 GLN D 67 CG CD OE1 NE2 REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 GLU D 73 CG CD OE1 OE2 REMARK 470 LYS D 74 CG CD CE NZ REMARK 470 LYS D 75 CG CD CE NZ REMARK 470 GLN D 76 CG CD OE1 NE2 REMARK 470 ASP D 136 CG OD1 OD2 REMARK 470 LYS D 139 CG CD CE NZ REMARK 470 LYS D 193 CG CD CE NZ REMARK 470 THR D 215 OG1 CG2 REMARK 470 ARG D 222 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 223 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER B -1 NI NI B 247 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -1 -3.13 -175.06 REMARK 500 LYS A 68 2.17 -53.32 REMARK 500 GLU A 73 -71.39 -95.29 REMARK 500 LYS A 75 -70.60 -54.23 REMARK 500 LEU A 105 -75.10 -61.36 REMARK 500 LYS A 157 9.16 -67.72 REMARK 500 LYS A 158 -25.97 -140.50 REMARK 500 ILE A 181 -76.56 -91.80 REMARK 500 LEU A 182 14.69 -66.63 REMARK 500 LEU A 182 14.64 -66.63 REMARK 500 ASN A 183 62.38 27.22 REMARK 500 ASN A 183 61.66 28.95 REMARK 500 GLU A 186 -86.47 -67.37 REMARK 500 LYS A 187 -33.91 -39.19 REMARK 500 ALA A 188 -85.68 -57.06 REMARK 500 THR A 194 -71.98 -47.84 REMARK 500 ALA A 201 -19.45 -48.18 REMARK 500 SER A 210 7.20 -167.74 REMARK 500 SER B -1 -7.44 -172.77 REMARK 500 SER B 64 -75.71 -59.84 REMARK 500 ILE B 65 -52.53 -28.18 REMARK 500 LYS B 68 -6.18 -59.58 REMARK 500 ALA B 109 92.61 -66.65 REMARK 500 PRO B 162 -8.38 -52.99 REMARK 500 ASN B 183 81.60 25.88 REMARK 500 SER B 184 91.22 -173.71 REMARK 500 ALA B 192 -77.35 -59.92 REMARK 500 ALA B 199 -77.93 -74.52 REMARK 500 ALA B 201 6.24 -56.48 REMARK 500 GLU B 202 4.21 -152.24 REMARK 500 LEU B 203 -5.51 -57.73 REMARK 500 GLU B 208 -31.55 -169.50 REMARK 500 THR B 229 -77.38 -68.61 REMARK 500 SER C -1 -5.96 168.28 REMARK 500 LYS C 68 42.78 -72.00 REMARK 500 THR C 69 43.49 179.45 REMARK 500 ALA C 72 86.14 -44.42 REMARK 500 GLU C 73 -76.28 -29.24 REMARK 500 ALA C 109 108.15 -53.61 REMARK 500 LYS C 158 -9.72 -147.33 REMARK 500 ASN C 183 40.34 32.97 REMARK 500 SER C 190 -72.56 -46.33 REMARK 500 GLU C 209 9.03 -67.78 REMARK 500 SER C 210 -20.67 -161.24 REMARK 500 TYR C 211 -55.00 -28.06 REMARK 500 TRP C 228 25.56 -78.70 REMARK 500 THR C 229 -61.96 -133.64 REMARK 500 SER D -1 -1.68 -171.79 REMARK 500 LYS D 68 5.15 -53.49 REMARK 500 THR D 69 -93.47 -108.34 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 X-RAY INDUCED COVALENT MODIFICATION OF LYSINE RESIDUE. N1 ATOM OF REMARK 600 PYRIDOXAL-PHOSPHATE MOIETY OF 3RD(FOBISIN101) COVALENTLY LINKED TO REMARK 600 NZ ATOM OF LYS120 VIA A DOUBLE BOND REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 247 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A -2 N REMARK 620 2 SER A -1 N 90.4 REMARK 620 3 HIS A 0 ND1 95.3 173.9 REMARK 620 4 HIS A 0 N 166.8 81.3 93.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 247 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B -2 N REMARK 620 2 HIS B 0 N 168.0 REMARK 620 3 HIS B 0 ND1 86.6 93.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 247 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C -2 N REMARK 620 2 SER C -1 N 87.4 REMARK 620 3 HIS C 0 ND1 97.3 173.5 REMARK 620 4 HIS C 0 N 165.4 78.2 96.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 247 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY D -2 N REMARK 620 2 SER D -1 N 84.6 REMARK 620 3 HIS D 0 ND1 94.4 163.1 REMARK 620 4 HIS D 0 N 168.5 83.8 96.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3RD A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3RD B 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3RD C 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3RD D 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI D 247 DBREF 3RDH A 1 245 UNP P63104 1433Z_HUMAN 1 245 DBREF 3RDH B 1 245 UNP P63104 1433Z_HUMAN 1 245 DBREF 3RDH C 1 245 UNP P63104 1433Z_HUMAN 1 245 DBREF 3RDH D 1 245 UNP P63104 1433Z_HUMAN 1 245 SEQADV 3RDH GLY A -2 UNP P63104 EXPRESSION TAG SEQADV 3RDH SER A -1 UNP P63104 EXPRESSION TAG SEQADV 3RDH HIS A 0 UNP P63104 EXPRESSION TAG SEQADV 3RDH GLY B -2 UNP P63104 EXPRESSION TAG SEQADV 3RDH SER B -1 UNP P63104 EXPRESSION TAG SEQADV 3RDH HIS B 0 UNP P63104 EXPRESSION TAG SEQADV 3RDH GLY C -2 UNP P63104 EXPRESSION TAG SEQADV 3RDH SER C -1 UNP P63104 EXPRESSION TAG SEQADV 3RDH HIS C 0 UNP P63104 EXPRESSION TAG SEQADV 3RDH GLY D -2 UNP P63104 EXPRESSION TAG SEQADV 3RDH SER D -1 UNP P63104 EXPRESSION TAG SEQADV 3RDH HIS D 0 UNP P63104 EXPRESSION TAG SEQRES 1 A 248 GLY SER HIS MET ASP LYS ASN GLU LEU VAL GLN LYS ALA SEQRES 2 A 248 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA SEQRES 3 A 248 ALA CYS MET LYS SER VAL THR GLU GLN GLY ALA GLU LEU SEQRES 4 A 248 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 A 248 ASN VAL VAL GLY ALA ARG ARG SER SER TRP ARG VAL VAL SEQRES 6 A 248 SER SER ILE GLU GLN LYS THR GLU GLY ALA GLU LYS LYS SEQRES 7 A 248 GLN GLN MET ALA ARG GLU TYR ARG GLU LYS ILE GLU THR SEQRES 8 A 248 GLU LEU ARG ASP ILE CYS ASN ASP VAL LEU SER LEU LEU SEQRES 9 A 248 GLU LYS PHE LEU ILE PRO ASN ALA SER GLN ALA GLU SER SEQRES 10 A 248 LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG SEQRES 11 A 248 TYR LEU ALA GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY SEQRES 12 A 248 ILE VAL ASP GLN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 A 248 GLU ILE SER LYS LYS GLU MET GLN PRO THR HIS PRO ILE SEQRES 14 A 248 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 A 248 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 A 248 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 A 248 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 A 248 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER ASP SEQRES 19 A 248 THR GLN GLY ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU SEQRES 20 A 248 ASN SEQRES 1 B 248 GLY SER HIS MET ASP LYS ASN GLU LEU VAL GLN LYS ALA SEQRES 2 B 248 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA SEQRES 3 B 248 ALA CYS MET LYS SER VAL THR GLU GLN GLY ALA GLU LEU SEQRES 4 B 248 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 B 248 ASN VAL VAL GLY ALA ARG ARG SER SER TRP ARG VAL VAL SEQRES 6 B 248 SER SER ILE GLU GLN LYS THR GLU GLY ALA GLU LYS LYS SEQRES 7 B 248 GLN GLN MET ALA ARG GLU TYR ARG GLU LYS ILE GLU THR SEQRES 8 B 248 GLU LEU ARG ASP ILE CYS ASN ASP VAL LEU SER LEU LEU SEQRES 9 B 248 GLU LYS PHE LEU ILE PRO ASN ALA SER GLN ALA GLU SER SEQRES 10 B 248 LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG SEQRES 11 B 248 TYR LEU ALA GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY SEQRES 12 B 248 ILE VAL ASP GLN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 B 248 GLU ILE SER LYS LYS GLU MET GLN PRO THR HIS PRO ILE SEQRES 14 B 248 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 B 248 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 B 248 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 B 248 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 B 248 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER ASP SEQRES 19 B 248 THR GLN GLY ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU SEQRES 20 B 248 ASN SEQRES 1 C 248 GLY SER HIS MET ASP LYS ASN GLU LEU VAL GLN LYS ALA SEQRES 2 C 248 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA SEQRES 3 C 248 ALA CYS MET LYS SER VAL THR GLU GLN GLY ALA GLU LEU SEQRES 4 C 248 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 C 248 ASN VAL VAL GLY ALA ARG ARG SER SER TRP ARG VAL VAL SEQRES 6 C 248 SER SER ILE GLU GLN LYS THR GLU GLY ALA GLU LYS LYS SEQRES 7 C 248 GLN GLN MET ALA ARG GLU TYR ARG GLU LYS ILE GLU THR SEQRES 8 C 248 GLU LEU ARG ASP ILE CYS ASN ASP VAL LEU SER LEU LEU SEQRES 9 C 248 GLU LYS PHE LEU ILE PRO ASN ALA SER GLN ALA GLU SER SEQRES 10 C 248 LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG SEQRES 11 C 248 TYR LEU ALA GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY SEQRES 12 C 248 ILE VAL ASP GLN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 C 248 GLU ILE SER LYS LYS GLU MET GLN PRO THR HIS PRO ILE SEQRES 14 C 248 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 C 248 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 C 248 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 C 248 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 C 248 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER ASP SEQRES 19 C 248 THR GLN GLY ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU SEQRES 20 C 248 ASN SEQRES 1 D 248 GLY SER HIS MET ASP LYS ASN GLU LEU VAL GLN LYS ALA SEQRES 2 D 248 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA SEQRES 3 D 248 ALA CYS MET LYS SER VAL THR GLU GLN GLY ALA GLU LEU SEQRES 4 D 248 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 D 248 ASN VAL VAL GLY ALA ARG ARG SER SER TRP ARG VAL VAL SEQRES 6 D 248 SER SER ILE GLU GLN LYS THR GLU GLY ALA GLU LYS LYS SEQRES 7 D 248 GLN GLN MET ALA ARG GLU TYR ARG GLU LYS ILE GLU THR SEQRES 8 D 248 GLU LEU ARG ASP ILE CYS ASN ASP VAL LEU SER LEU LEU SEQRES 9 D 248 GLU LYS PHE LEU ILE PRO ASN ALA SER GLN ALA GLU SER SEQRES 10 D 248 LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG SEQRES 11 D 248 TYR LEU ALA GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY SEQRES 12 D 248 ILE VAL ASP GLN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 D 248 GLU ILE SER LYS LYS GLU MET GLN PRO THR HIS PRO ILE SEQRES 14 D 248 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 D 248 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 D 248 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 D 248 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 D 248 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER ASP SEQRES 19 D 248 THR GLN GLY ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU SEQRES 20 D 248 ASN HET 3RD A 246 17 HET NI A 247 1 HET 3RD B 246 17 HET NI B 247 1 HET 3RD C 246 17 HET NI C 247 1 HET 3RD D 246 17 HET NI D 247 1 HETNAM 3RD 4-[(E)-{4-FORMYL-5-HYDROXY-6-METHYL-3-[(PHOSPHONOOXY) HETNAM 2 3RD METHYL]PYRIDIN-2-YL}DIAZENYL]BENZOIC ACID HETNAM NI NICKEL (II) ION HETSYN 3RD FOBISIN101 FORMUL 5 3RD 4(C15 H14 N3 O8 P) FORMUL 6 NI 4(NI 2+) FORMUL 13 HOH *86(H2 O) HELIX 1 1 ASP A 2 ALA A 16 1 15 HELIX 2 2 ARG A 18 GLU A 31 1 14 HELIX 3 3 SER A 37 LYS A 68 1 32 HELIX 4 4 GLU A 73 PHE A 104 1 32 HELIX 5 5 LEU A 105 ALA A 109 5 5 HELIX 6 6 GLN A 111 VAL A 132 1 22 HELIX 7 7 ALA A 134 MET A 160 1 27 HELIX 8 8 HIS A 164 ILE A 181 1 18 HELIX 9 9 SER A 184 ALA A 201 1 18 HELIX 10 10 SER A 210 SER A 230 1 21 HELIX 11 11 ASP B 2 ALA B 16 1 15 HELIX 12 12 ARG B 18 GLN B 32 1 15 HELIX 13 13 SER B 37 THR B 69 1 33 HELIX 14 14 LYS B 74 PHE B 104 1 31 HELIX 15 15 PHE B 104 ALA B 109 1 6 HELIX 16 16 GLN B 111 GLU B 131 1 21 HELIX 17 17 ALA B 134 MET B 160 1 27 HELIX 18 18 HIS B 164 ILE B 181 1 18 HELIX 19 19 SER B 184 ALA B 201 1 18 HELIX 20 20 SER B 210 TRP B 228 1 19 HELIX 21 21 ASP C 2 ALA C 16 1 15 HELIX 22 22 ARG C 18 GLU C 31 1 14 HELIX 23 23 SER C 37 LYS C 68 1 32 HELIX 24 24 ALA C 72 PHE C 104 1 33 HELIX 25 25 PHE C 104 ALA C 109 1 6 HELIX 26 26 GLN C 111 ALA C 133 1 23 HELIX 27 27 ALA C 134 MET C 160 1 27 HELIX 28 28 HIS C 164 ILE C 181 1 18 HELIX 29 29 SER C 184 ALA C 201 1 18 HELIX 30 30 SER C 207 LYS C 212 1 6 HELIX 31 31 LYS C 212 TRP C 228 1 17 HELIX 32 32 ASP D 2 ALA D 16 1 15 HELIX 33 33 ARG D 18 GLN D 32 1 15 HELIX 34 34 SER D 37 LYS D 68 1 32 HELIX 35 35 ALA D 72 PHE D 104 1 33 HELIX 36 36 LEU D 105 ALA D 109 5 5 HELIX 37 37 GLN D 111 ALA D 133 1 23 HELIX 38 38 ALA D 134 LYS D 157 1 24 HELIX 39 39 HIS D 164 ILE D 181 1 18 HELIX 40 40 SER D 184 GLU D 202 1 19 HELIX 41 41 LEU D 203 LEU D 206 5 4 HELIX 42 42 SER D 210 THR D 229 1 20 LINK NZ LYS A 120 N3 3RD A 246 1555 1555 1.20 LINK NZ LYS B 120 N3 3RD B 246 1555 1555 1.20 LINK NZ LYS C 120 N3 3RD C 246 1555 1555 1.21 LINK NZ LYS D 120 N3 3RD D 246 1555 1555 1.21 LINK N GLY A -2 NI NI A 247 1555 1555 1.90 LINK N SER A -1 NI NI A 247 1555 1555 1.81 LINK ND1 HIS A 0 NI NI A 247 1555 1555 1.98 LINK N HIS A 0 NI NI A 247 1555 1555 2.01 LINK N GLY B -2 NI NI B 247 1555 1555 1.90 LINK N HIS B 0 NI NI B 247 1555 1555 1.95 LINK ND1 HIS B 0 NI NI B 247 1555 1555 2.06 LINK N GLY C -2 NI NI C 247 1555 1555 1.75 LINK N SER C -1 NI NI C 247 1555 1555 1.93 LINK ND1 HIS C 0 NI NI C 247 1555 1555 1.86 LINK N HIS C 0 NI NI C 247 1555 1555 2.04 LINK N GLY D -2 NI NI D 247 1555 1555 1.94 LINK N SER D -1 NI NI D 247 1555 1555 1.89 LINK ND1 HIS D 0 NI NI D 247 1555 1555 1.92 LINK N HIS D 0 NI NI D 247 1555 1555 1.96 SITE 1 AC1 5 LYS A 120 LEU A 172 ASN A 173 ILE A 217 SITE 2 AC1 5 LEU A 220 SITE 1 AC2 4 GLY A -2 SER A -1 HIS A 0 MET A 1 SITE 1 AC3 5 LYS B 49 LYS B 120 GLY B 169 ASN B 173 SITE 2 AC3 5 ILE B 217 SITE 1 AC4 4 SER B -1 GLY B -2 HIS B 0 MET B 1 SITE 1 AC5 5 LYS C 49 LYS C 120 GLY C 169 ASN C 173 SITE 2 AC5 5 HOH C 258 SITE 1 AC6 4 GLY C -2 SER C -1 HIS C 0 MET C 1 SITE 1 AC7 5 LYS D 49 LYS D 120 GLY D 169 ASN D 173 SITE 2 AC7 5 HOH D 267 SITE 1 AC8 4 SER D -1 GLY D -2 HIS D 0 MET D 1 CRYST1 94.745 94.745 237.862 90.00 90.00 120.00 P 65 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010555 0.006094 0.000000 0.00000 SCALE2 0.000000 0.012187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004204 0.00000