HEADER RIBOSOMAL PROTEIN 05-APR-11 3RF2 TITLE CRYSTAL STRUCTURE OF 30S RIBOSOMAL PROTEIN S8 FROM AQUIFEX AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S8; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: RPSH, AQ_1651; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS RIBOSOMAL PROTEIN, RNA-BINDING PROTEIN, AQUIFEX AEOLICUS, KEYWDS 2 HYPERTHERMOPHILIC BACTERIUM, RIBOSOME EXPDTA X-RAY DIFFRACTION AUTHOR E.MENICHELLI,J.R.WILLIAMSON REVDAT 5 21-FEB-24 3RF2 1 REMARK REVDAT 4 25-OCT-17 3RF2 1 REMARK REVDAT 3 01-FEB-12 3RF2 1 JRNL REVDAT 2 14-DEC-11 3RF2 1 JRNL REVDAT 1 16-NOV-11 3RF2 0 JRNL AUTH E.MENICHELLI,S.P.EDGCOMB,M.I.RECHT,J.R.WILLIAMSON JRNL TITL THE STRUCTURE OF AQUIFEX AEOLICUS RIBOSOMAL PROTEIN S8 JRNL TITL 2 REVEALS A UNIQUE SUBDOMAIN THAT CONTRIBUTES TO AN EXTREMELY JRNL TITL 3 TIGHT ASSOCIATION WITH 16S RRNA. JRNL REF J.MOL.BIOL. V. 415 489 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22079365 JRNL DOI 10.1016/J.JMB.2011.10.046 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 9730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.4352 - 4.1294 1.00 1376 150 0.2033 0.2313 REMARK 3 2 4.1294 - 3.2789 1.00 1303 145 0.1951 0.2485 REMARK 3 3 3.2789 - 2.8647 1.00 1257 140 0.2350 0.2650 REMARK 3 4 2.8647 - 2.6030 0.99 1258 138 0.2539 0.3409 REMARK 3 5 2.6030 - 2.4165 0.98 1234 137 0.2695 0.3037 REMARK 3 6 2.4165 - 2.2741 0.95 1193 131 0.2627 0.3267 REMARK 3 7 2.2741 - 2.1600 0.92 1138 130 0.2902 0.3432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 60.46 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.43350 REMARK 3 B22 (A**2) : -6.43350 REMARK 3 B33 (A**2) : 12.86700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1376 REMARK 3 ANGLE : 0.987 1842 REMARK 3 CHIRALITY : 0.065 193 REMARK 3 PLANARITY : 0.005 226 REMARK 3 DIHEDRAL : 14.451 536 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 4:30) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0652 -26.1369 14.4411 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.4456 REMARK 3 T33: 0.6466 T12: 0.0126 REMARK 3 T13: 0.0084 T23: 0.2747 REMARK 3 L TENSOR REMARK 3 L11: 0.2732 L22: 0.0670 REMARK 3 L33: 0.0667 L12: 0.0178 REMARK 3 L13: 0.1117 L23: -0.0159 REMARK 3 S TENSOR REMARK 3 S11: 0.1529 S12: -0.4852 S13: -0.7549 REMARK 3 S21: 0.2775 S22: 0.1854 S23: 0.3656 REMARK 3 S31: 0.1649 S32: -0.3597 S33: -0.0376 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 31:53) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9316 -26.2704 3.1725 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.2190 REMARK 3 T33: 0.5780 T12: 0.1195 REMARK 3 T13: -0.0494 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 0.0354 L22: 0.0449 REMARK 3 L33: 0.2781 L12: 0.0335 REMARK 3 L13: -0.0966 L23: -0.1040 REMARK 3 S TENSOR REMARK 3 S11: 0.2018 S12: 0.3171 S13: -0.5303 REMARK 3 S21: -0.1175 S22: -0.1289 S23: 0.0269 REMARK 3 S31: -0.0907 S32: 0.2262 S33: 0.0565 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 54:69) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2965 -40.7208 16.2319 REMARK 3 T TENSOR REMARK 3 T11: 0.1774 T22: 0.2584 REMARK 3 T33: 1.5957 T12: 0.1261 REMARK 3 T13: -0.4170 T23: 0.4981 REMARK 3 L TENSOR REMARK 3 L11: 0.0173 L22: 0.0051 REMARK 3 L33: 0.0207 L12: 0.0074 REMARK 3 L13: 0.0099 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.0467 S13: -0.0793 REMARK 3 S21: -0.0388 S22: 0.0180 S23: 0.0003 REMARK 3 S31: 0.0802 S32: 0.0088 S33: 0.0198 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 70:98) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8284 -36.3659 16.5536 REMARK 3 T TENSOR REMARK 3 T11: 0.2994 T22: 0.1336 REMARK 3 T33: 1.2097 T12: -0.2127 REMARK 3 T13: -0.2009 T23: 0.4934 REMARK 3 L TENSOR REMARK 3 L11: 0.0151 L22: 0.0601 REMARK 3 L33: 0.1232 L12: 0.0336 REMARK 3 L13: -0.0560 L23: -0.0884 REMARK 3 S TENSOR REMARK 3 S11: 0.0954 S12: -0.0936 S13: -0.3717 REMARK 3 S21: -0.0022 S22: 0.0735 S23: 0.2005 REMARK 3 S31: 0.1402 S32: -0.2530 S33: 0.0171 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 99:120) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2977 -16.4324 13.0896 REMARK 3 T TENSOR REMARK 3 T11: 0.3578 T22: 0.2815 REMARK 3 T33: 0.1039 T12: 0.0429 REMARK 3 T13: -0.0259 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 0.2524 L22: 0.5275 REMARK 3 L33: 0.2562 L12: -0.1066 REMARK 3 L13: 0.0395 L23: 0.2336 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.3397 S13: -0.0735 REMARK 3 S21: 0.2455 S22: 0.0595 S23: 0.2804 REMARK 3 S31: -0.2190 S32: -0.0699 S33: 0.0528 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 121:168) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5706 -15.3831 -3.4677 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.3300 REMARK 3 T33: 0.1717 T12: 0.0442 REMARK 3 T13: -0.0369 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 0.9158 L22: 0.8134 REMARK 3 L33: 0.5847 L12: 0.0060 REMARK 3 L13: 0.2466 L23: 0.5169 REMARK 3 S TENSOR REMARK 3 S11: 0.1767 S12: 0.5952 S13: -0.3902 REMARK 3 S21: -0.3686 S22: 0.0308 S23: 0.0933 REMARK 3 S31: 0.1623 S32: 0.1075 S33: 0.0153 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-10; 29-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 0.978, 0.918, 0.979 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS; SIDE SCATTERING REMARK 200 BENT CUBE-ROOT I-BEAM SINGLE REMARK 200 CRYSTAL; ASYMMETRIC CUT 4.965 REMARK 200 DEGS REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; MARMOSAIC REMARK 200 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9918 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.23600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.2.4, SOLVE, RESOLVE 2.15 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 400, 0.1M SODIUM ACETATE, 0.2M REMARK 280 LITHIUM SULPHATE, PH 4.6, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.80700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.11750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.11750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 9.40350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.11750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.11750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.21050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.11750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.11750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 9.40350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.11750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.11750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.21050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.80700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE PROTEIN WAS CHARACTERIZED BY SIZE REMARK 300 EXCLUSION CHROMATOGRAPHY AND IN SOLUTION IT IS FOUND TO BE A REMARK 300 MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 197 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG1 CG2 REMARK 470 SER A 71 OG REMARK 470 PRO A 72 CG CD REMARK 470 ASN A 73 CG OD1 ND2 REMARK 470 PRO A 74 CG CD REMARK 470 LYS A 75 CG CD CE NZ REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 71 REMARK 475 PRO A 72 REMARK 475 ASN A 73 REMARK 475 PRO A 74 REMARK 475 LYS A 75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N TYR A 79 O HOH A 224 2.12 REMARK 500 O LEU A 83 OD1 ASN A 87 2.17 REMARK 500 O LYS A 81 OE2 GLU A 85 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 143.37 -176.89 REMARK 500 PRO A 72 83.23 -62.35 REMARK 500 VAL A 116 -81.44 -103.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 173 DBREF 3RF2 A 1 168 UNP O67566 RS8_AQUAE 1 168 SEQRES 1 A 168 MET SER ALA VAL ASP PRO ILE ALA ASP MET PHE SER ALA SEQRES 2 A 168 ILE LYS ASN ALA ILE MET ARG ARG ASP ASP PHE LEU TYR SEQRES 3 A 168 VAL PRO SER SER LYS LEU LYS GLU ARG ILE LEU ASP VAL SEQRES 4 A 168 LEU LYS LYS GLU GLY PHE ILE GLN ASP TRP GLU ALA LEU SEQRES 5 A 168 LYS GLY GLU LYS TYR GLU GLU GLU TYR LYS LYS MET LYS SEQRES 6 A 168 GLU LEU ALA GLU LYS SER PRO ASN PRO LYS MET LYS ARG SEQRES 7 A 168 TYR LEU LYS GLN LEU GLU GLU TYR ASN LYS GLY THR GLN SEQRES 8 A 168 TYR PRO ILE LYS ILE TYR LEU LYS TYR LEU ASP PRO LYS SEQRES 9 A 168 LYS ARG LYS SER ALA ILE THR ASN ILE VAL LYS VAL SER SEQRES 10 A 168 LYS GLY GLY ARG ARG VAL TYR ALA GLY VAL ARG THR MET SEQRES 11 A 168 PRO TYR VAL LYS ARG GLY LEU GLY ILE ALA ILE VAL SER SEQRES 12 A 168 THR ASP ALA GLY VAL MET THR ASP HIS GLU ALA ARG ARG SEQRES 13 A 168 MET ARG LYS GLY GLY GLU VAL ILE ALA PHE VAL TRP HET SO4 A 169 5 HET SO4 A 170 5 HET SO4 A 171 5 HET SO4 A 172 5 HET SO4 A 173 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 HOH *51(H2 O) HELIX 1 1 ASP A 5 ARG A 20 1 16 HELIX 2 2 SER A 30 GLU A 43 1 14 HELIX 3 3 LYS A 53 LYS A 70 1 18 HELIX 4 4 MET A 76 TYR A 86 1 11 HELIX 5 5 VAL A 133 LEU A 137 5 5 HELIX 6 6 ASP A 151 MET A 157 1 7 SHEET 1 A 3 PHE A 24 PRO A 28 0 SHEET 2 A 3 PRO A 93 LEU A 98 -1 O ILE A 94 N VAL A 27 SHEET 3 A 3 ILE A 46 ALA A 51 -1 N ASP A 48 O TYR A 97 SHEET 1 B 3 ASN A 112 LYS A 115 0 SHEET 2 B 3 GLY A 161 TRP A 168 -1 O PHE A 166 N VAL A 114 SHEET 3 B 3 TYR A 124 ALA A 125 -1 N ALA A 125 O GLY A 161 SHEET 1 C 4 ASN A 112 LYS A 115 0 SHEET 2 C 4 GLY A 161 TRP A 168 -1 O PHE A 166 N VAL A 114 SHEET 3 C 4 ILE A 139 THR A 144 -1 N ILE A 139 O VAL A 167 SHEET 4 C 4 GLY A 147 THR A 150 -1 O MET A 149 N VAL A 142 SITE 1 AC1 5 PRO A 6 PRO A 28 LYS A 33 GLN A 91 SITE 2 AC1 5 HOH A 180 SITE 1 AC2 4 GLY A 126 ARG A 128 THR A 129 HOH A 206 SITE 1 AC3 4 LYS A 15 ASN A 112 ARG A 128 ARG A 158 SITE 1 AC4 6 TYR A 132 ARG A 135 HIS A 152 ARG A 155 SITE 2 AC4 6 HOH A 204 HOH A 208 SITE 1 AC5 4 GLY A 119 GLY A 120 ARG A 122 HOH A 202 CRYST1 96.235 96.235 37.614 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026586 0.00000