HEADER CELL ADHESION 06-APR-11 3RFE TITLE CRYSTAL STRUCTURE OF GLYCOPROTEIN GPIB ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET GLYCOPROTEIN IB BETA CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 26-146; COMPND 5 SYNONYM: GP-IB BETA, GPIB-BETA, GPIBB, ANTIGEN CD42B-BETA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GP1BB; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS GLYCOPROTEIN, PLATELET SURFACE RECEPTOR, GPIX, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR P.A.MCEWAN,W.YANG,K.H.CARR,X.MO,X.ZHENG,R.LI,J.EMSLEY REVDAT 3 30-OCT-24 3RFE 1 HETSYN REVDAT 2 29-JUL-20 3RFE 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE REVDAT 1 21-DEC-11 3RFE 0 JRNL AUTH P.A.MCEWAN,W.YANG,K.H.CARR,X.MO,X.ZHENG,R.LI,J.EMSLEY JRNL TITL QUATERNARY ORGANIZATION OF GPIB-IX COMPLEX AND INSIGHTS INTO JRNL TITL 2 BERNARD-SOULIER SYNDROME REVEALED BY THE STRUCTURES OF JRNL TITL 3 GPIBBETA AND A GPIBBETA/GPIX CHIMER JRNL REF BLOOD V. 118 5292 2011 JRNL REFN ISSN 0006-4971 JRNL PMID 21908432 JRNL DOI 10.1182/BLOOD-2011-05-356253 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 75004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3906 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5039 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 448 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.694 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1902 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2626 ; 2.489 ; 2.044 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 236 ; 6.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;33.146 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 256 ;12.838 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ; 8.749 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.163 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1436 ; 0.004 ; 0.023 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 1.505 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1934 ; 2.415 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 698 ; 2.761 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 692 ; 3.912 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78352 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.245 REMARK 200 RESOLUTION RANGE LOW (A) : 54.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M(NH4)2SO4, 0.4M LICL, 0.1M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.38200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 119 REMARK 465 PRO A 120 REMARK 465 LEU A 121 REMARK 465 SER A 122 REMARK 465 SER A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 GLY B 119 REMARK 465 PRO B 120 REMARK 465 LEU B 121 REMARK 465 SER B 122 REMARK 465 SER B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG B 130 O HOH B 435 1.70 REMARK 500 O HOH A 183 O HOH A 272 1.75 REMARK 500 O HOH A 268 O HOH A 373 1.82 REMARK 500 O HOH B 300 O HOH B 443 2.02 REMARK 500 O HOH B 198 O HOH B 370 2.02 REMARK 500 O HOH B 195 O HOH B 408 2.02 REMARK 500 O HOH B 290 O HOH B 410 2.08 REMARK 500 O HOH A 251 O HOH A 411 2.09 REMARK 500 O HOH B 314 O HOH B 336 2.09 REMARK 500 O HOH B 217 O HOH B 239 2.10 REMARK 500 O HOH A 340 O HOH A 395 2.11 REMARK 500 O HOH A 225 O HOH A 359 2.14 REMARK 500 O HOH A 202 O HOH A 438 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 206 O HOH B 152 2656 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 84 CG GLU A 84 CD 0.098 REMARK 500 TYR A 106 CD1 TYR A 106 CE1 0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 110 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU B 11 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP B 13 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 CYS B 14 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 16 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG B 16 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG B 67 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 67 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 69 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 113 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 -157.13 -89.71 REMARK 500 LEU A 53 79.27 -118.14 REMARK 500 ASN B 40 -158.57 -93.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3REZ RELATED DB: PDB DBREF 3RFE A 1 121 UNP P13224 GP1BB_HUMAN 26 146 DBREF 3RFE B 1 121 UNP P13224 GP1BB_HUMAN 26 146 SEQADV 3RFE PRO A 0 UNP P13224 EXPRESSION TAG SEQADV 3RFE SER A 122 UNP P13224 EXPRESSION TAG SEQADV 3RFE SER A 123 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS A 124 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS A 125 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS A 126 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS A 127 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS A 128 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS A 129 UNP P13224 EXPRESSION TAG SEQADV 3RFE PRO B 0 UNP P13224 EXPRESSION TAG SEQADV 3RFE SER B 122 UNP P13224 EXPRESSION TAG SEQADV 3RFE SER B 123 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS B 124 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS B 125 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS B 126 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS B 127 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS B 128 UNP P13224 EXPRESSION TAG SEQADV 3RFE HIS B 129 UNP P13224 EXPRESSION TAG SEQRES 1 A 130 PRO CYS PRO ALA PRO CYS SER CYS ALA GLY THR LEU VAL SEQRES 2 A 130 ASP CYS GLY ARG ARG GLY LEU THR TRP ALA SER LEU PRO SEQRES 3 A 130 THR ALA PHE PRO VAL ASP THR THR GLU LEU VAL LEU THR SEQRES 4 A 130 GLY ASN ASN LEU THR ALA LEU PRO PRO GLY LEU LEU ASP SEQRES 5 A 130 ALA LEU PRO ALA LEU ARG THR ALA HIS LEU GLY ALA ASN SEQRES 6 A 130 PRO TRP ARG CYS ASP CYS ARG LEU VAL PRO LEU ARG ALA SEQRES 7 A 130 TRP LEU ALA GLY ARG PRO GLU ARG ALA PRO TYR ARG ASP SEQRES 8 A 130 LEU ARG CYS VAL ALA PRO PRO ALA LEU ARG GLY ARG LEU SEQRES 9 A 130 LEU PRO TYR LEU ALA GLU ASP GLU LEU ARG ALA ALA CYS SEQRES 10 A 130 ALA PRO GLY PRO LEU SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 130 PRO CYS PRO ALA PRO CYS SER CYS ALA GLY THR LEU VAL SEQRES 2 B 130 ASP CYS GLY ARG ARG GLY LEU THR TRP ALA SER LEU PRO SEQRES 3 B 130 THR ALA PHE PRO VAL ASP THR THR GLU LEU VAL LEU THR SEQRES 4 B 130 GLY ASN ASN LEU THR ALA LEU PRO PRO GLY LEU LEU ASP SEQRES 5 B 130 ALA LEU PRO ALA LEU ARG THR ALA HIS LEU GLY ALA ASN SEQRES 6 B 130 PRO TRP ARG CYS ASP CYS ARG LEU VAL PRO LEU ARG ALA SEQRES 7 B 130 TRP LEU ALA GLY ARG PRO GLU ARG ALA PRO TYR ARG ASP SEQRES 8 B 130 LEU ARG CYS VAL ALA PRO PRO ALA LEU ARG GLY ARG LEU SEQRES 9 B 130 LEU PRO TYR LEU ALA GLU ASP GLU LEU ARG ALA ALA CYS SEQRES 10 B 130 ALA PRO GLY PRO LEU SER SER HIS HIS HIS HIS HIS HIS MODRES 3RFE ASN A 41 ASN GLYCOSYLATION SITE MODRES 3RFE ASN B 41 ASN GLYCOSYLATION SITE HET NAG A 130 14 HET MG A 131 1 HET SO4 A 132 5 HET SO4 A 133 5 HET SO4 A 134 5 HET NAG B 130 14 HET MG B 131 1 HET SO4 B 132 5 HET SO4 B 133 5 HET SO4 B 134 5 HET SO4 B 135 5 HET SO4 B 136 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 MG 2(MG 2+) FORMUL 5 SO4 8(O4 S 2-) FORMUL 15 HOH *448(H2 O) HELIX 1 1 LEU A 49 LEU A 53 5 5 HELIX 2 2 ASP A 69 ARG A 71 5 3 HELIX 3 3 LEU A 72 GLY A 81 1 10 HELIX 4 4 ARG A 85 ARG A 89 5 5 HELIX 5 5 LEU A 103 LEU A 107 5 5 HELIX 6 6 ALA A 108 ALA A 115 1 8 HELIX 7 7 ASP B 69 ARG B 71 5 3 HELIX 8 8 LEU B 72 GLY B 81 1 10 HELIX 9 9 ARG B 85 ARG B 89 5 5 HELIX 10 10 LEU B 103 LEU B 107 5 5 HELIX 11 11 ALA B 108 ALA B 115 1 8 SHEET 1 A 4 SER A 6 ALA A 8 0 SHEET 2 A 4 LEU A 11 ASP A 13 -1 O ASP A 13 N SER A 6 SHEET 3 A 4 GLU A 34 VAL A 36 1 O VAL A 36 N VAL A 12 SHEET 4 A 4 THR A 58 HIS A 60 1 O HIS A 60 N LEU A 35 SHEET 1 B 4 SER B 6 ALA B 8 0 SHEET 2 B 4 LEU B 11 ASP B 13 -1 O ASP B 13 N SER B 6 SHEET 3 B 4 GLU B 34 VAL B 36 1 O GLU B 34 N VAL B 12 SHEET 4 B 4 THR B 58 HIS B 60 1 O HIS B 60 N LEU B 35 SSBOND 1 CYS A 1 CYS A 7 1555 1555 2.03 SSBOND 2 CYS A 5 CYS A 14 1555 1555 2.02 SSBOND 3 CYS A 68 CYS A 93 1555 1555 2.02 SSBOND 4 CYS A 70 CYS A 116 1555 1555 2.23 SSBOND 5 CYS B 1 CYS B 7 1555 1555 2.02 SSBOND 6 CYS B 5 CYS B 14 1555 1555 2.00 SSBOND 7 CYS B 68 CYS B 93 1555 1555 1.99 SSBOND 8 CYS B 70 CYS B 116 1555 1555 2.21 LINK ND2 ASN A 41 C1 NAG A 130 1555 1555 1.40 LINK ND2 ASN B 41 C1 NAG B 130 1555 1555 1.43 CISPEP 1 ALA A 95 PRO A 96 0 -10.51 CISPEP 2 ALA B 95 PRO B 96 0 -9.10 CRYST1 61.506 34.764 71.532 90.00 92.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016259 0.000000 0.000610 0.00000 SCALE2 0.000000 0.028765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013990 0.00000