HEADER PROTEIN BINDING 06-APR-11 3RFJ TITLE DESIGN OF A BINDING SCAFFOLD BASED ON VARIABLE LYMPHOCYTE RECEPTORS OF TITLE 2 JAWLESS VERTEBRATES BY MODULE ENGINEERING COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERNALIN B, REPEAT MODULES, VARIABLE LYMPHOCYTE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CHIMERA OF INTERNALIN B, REPEAT MODULES, VARIABLE COMPND 6 LYMPHOCYTE RECEPTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES, PETROMYZON MARINUS, SOURCE 3 SYNTHETIC; SOURCE 4 ORGANISM_COMMON: MARINE LAMPREY; SOURCE 5 ORGANISM_TAXID: 637381, 7757, 32630; SOURCE 6 STRAIN: 08-5923; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LRR, PROTEIN BINDING, PLASMA EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KIM,H.K.CHEONG,Y.H.JEON REVDAT 3 06-NOV-24 3RFJ 1 REMARK SEQADV REVDAT 2 16-AUG-17 3RFJ 1 SOURCE REMARK REVDAT 1 14-MAR-12 3RFJ 0 JRNL AUTH S.C.LEE,K.PARK,J.HAN,J.J.LEE,H.J.KIM,S.HONG,W.HEU,Y.J.KIM, JRNL AUTH 2 J.S.HA,S.G.LEE,H.K.CHEONG,Y.H.JEON,D.KIM,H.S.KIM JRNL TITL DESIGN OF A BINDING SCAFFOLD BASED ON VARIABLE LYMPHOCYTE JRNL TITL 2 RECEPTORS OF JAWLESS VERTEBRATES BY MODULE ENGINEERING JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 3299 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22328160 JRNL DOI 10.1073/PNAS.1113193109 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 27691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1705 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.048 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2154 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2939 ; 2.279 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 6.430 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;45.977 ;26.354 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;17.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;12.513 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1596 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 1.290 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2184 ; 2.309 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 813 ; 3.945 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 755 ; 6.254 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000064867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27691 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 26.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.5% POLYETHYLENE GLYCOL 4000, REMARK 280 15%(W/V) GLYCEROL, 0.17M AMMONIUM SULFATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.78350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.79850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.41800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.79850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.78350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.41800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 PRO A 272 REMARK 465 GLY A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 6 CB SER A 6 OG -0.091 REMARK 500 LYS A 29 CB LYS A 29 CG 0.215 REMARK 500 PHE A 201 CZ PHE A 201 CE2 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 6 N - CA - CB ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU A 108 CB - CG - CD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 GLN A 120 C - N - CA ANGL. DEV. = -27.5 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 LEU A 244 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU A 244 CB - CG - CD2 ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 62 70.28 -113.26 REMARK 500 ASN A 73 -153.11 -106.93 REMARK 500 ASN A 95 -156.47 -101.02 REMARK 500 ASN A 102 134.27 -38.43 REMARK 500 LEU A 108 49.93 -83.79 REMARK 500 ASN A 119 -168.43 -125.05 REMARK 500 GLN A 120 53.05 -116.11 REMARK 500 ASN A 167 -156.19 -125.98 REMARK 500 ASN A 191 -159.40 -131.63 REMARK 500 LEU A 242 -80.84 -72.31 REMARK 500 ASN A 243 -166.30 -125.00 REMARK 500 ASP A 245 84.92 -167.05 REMARK 500 SER A 267 131.73 -178.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 281 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RFS RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE 66-213 REPRESENTS CONSENSUS DESIGNED REPEAT MODULES. REMARK 999 THE SEQUENCES OF REPEAT MOLDUES IS BASED ON VARIABLE LYMPHOCYTE REMARK 999 RECEPTORS. DBREF 3RFJ A 1 65 UNP D2P9A6 D2P9A6_LISM2 36 100 DBREF 3RFJ A 66 213 PDB 3RFJ 3RFJ 66 213 DBREF 3RFJ A 214 273 UNP Q6E4K6 Q6E4K6_PETMA 130 189 SEQADV 3RFJ ALA A 24 UNP D2P9A6 ASP 59 CONFLICT SEQADV 3RFJ HIS A 274 UNP Q6E4K6 EXPRESSION TAG SEQADV 3RFJ HIS A 275 UNP Q6E4K6 EXPRESSION TAG SEQADV 3RFJ HIS A 276 UNP Q6E4K6 EXPRESSION TAG SEQADV 3RFJ HIS A 277 UNP Q6E4K6 EXPRESSION TAG SEQADV 3RFJ HIS A 278 UNP Q6E4K6 EXPRESSION TAG SEQADV 3RFJ HIS A 279 UNP Q6E4K6 EXPRESSION TAG SEQRES 1 A 279 GLU THR ILE THR VAL SER THR PRO ILE LYS GLN ILE PHE SEQRES 2 A 279 PRO ASP ASP ALA PHE ALA GLU THR ILE LYS ALA ASN LEU SEQRES 3 A 279 LYS LYS LYS SER VAL THR ASP ALA VAL THR GLN ASN GLU SEQRES 4 A 279 LEU ASN SER ILE ASP GLN ILE ILE ALA ASN ASN SER ASP SEQRES 5 A 279 ILE LYS SER VAL GLN GLY ILE GLN TYR LEU PRO ASN VAL SEQRES 6 A 279 ARG TYR LEU ALA LEU GLY GLY ASN LYS LEU HIS ASP ILE SEQRES 7 A 279 SER ALA LEU LYS GLU LEU THR ASN LEU THR TYR LEU ILE SEQRES 8 A 279 LEU THR GLY ASN GLN LEU GLN SER LEU PRO ASN GLY VAL SEQRES 9 A 279 PHE ASP LYS LEU THR ASN LEU LYS GLU LEU VAL LEU VAL SEQRES 10 A 279 GLU ASN GLN LEU GLN SER LEU PRO ASP GLY VAL PHE ASP SEQRES 11 A 279 LYS LEU THR ASN LEU THR TYR LEU TYR LEU TYR HIS ASN SEQRES 12 A 279 GLN LEU GLN SER LEU PRO LYS GLY VAL PHE ASP LYS LEU SEQRES 13 A 279 THR ASN LEU THR ARG LEU ASP LEU ASP ASN ASN GLN LEU SEQRES 14 A 279 GLN SER LEU PRO GLU GLY VAL PHE ASP LYS LEU THR GLN SEQRES 15 A 279 LEU LYS GLN LEU SER LEU ASN ASP ASN GLN LEU LYS SER SEQRES 16 A 279 VAL PRO ASP GLY VAL PHE ASP ARG LEU THR SER LEU THR SEQRES 17 A 279 HIS ILE TRP LEU LEU ASN ASN PRO TRP ASP CYS ALA CYS SEQRES 18 A 279 SER ASP ILE LEU TYR LEU SER ARG TRP ILE SER GLN HIS SEQRES 19 A 279 PRO GLY LEU VAL PHE GLY TYR LEU ASN LEU ASP PRO ASP SEQRES 20 A 279 SER ALA ARG CYS SER GLY THR ASN THR PRO VAL ARG ALA SEQRES 21 A 279 VAL THR GLU ALA SER THR SER PRO SER LYS CYS PRO GLY SEQRES 22 A 279 HIS HIS HIS HIS HIS HIS HET SO4 A 280 5 HET SO4 A 281 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *97(H2 O) HELIX 1 1 ILE A 9 PHE A 13 1 5 HELIX 2 2 ASP A 15 LEU A 26 1 12 HELIX 3 3 THR A 36 SER A 42 1 7 HELIX 4 4 GLY A 58 LEU A 62 5 5 HELIX 5 5 ILE A 78 LYS A 82 5 5 HELIX 6 6 CYS A 221 ASP A 223 5 3 HELIX 7 7 ILE A 224 HIS A 234 1 11 HELIX 8 8 PRO A 257 VAL A 261 5 5 HELIX 9 9 THR A 262 THR A 266 5 5 HELIX 10 10 SER A 267 CYS A 271 5 5 SHEET 1 A 2 THR A 7 PRO A 8 0 SHEET 2 A 2 ALA A 34 VAL A 35 -1 O VAL A 35 N THR A 7 SHEET 1 B 9 GLN A 45 ILE A 47 0 SHEET 2 B 9 TYR A 67 ALA A 69 1 O ALA A 69 N ILE A 46 SHEET 3 B 9 TYR A 89 ILE A 91 1 O ILE A 91 N LEU A 68 SHEET 4 B 9 GLU A 113 VAL A 115 1 O VAL A 115 N LEU A 90 SHEET 5 B 9 TYR A 137 TYR A 139 1 O TYR A 139 N LEU A 114 SHEET 6 B 9 ARG A 161 ASP A 163 1 O ARG A 161 N LEU A 138 SHEET 7 B 9 GLN A 185 SER A 187 1 O GLN A 185 N LEU A 162 SHEET 8 B 9 HIS A 209 TRP A 211 1 O HIS A 209 N LEU A 186 SHEET 9 B 9 VAL A 238 PHE A 239 1 O PHE A 239 N ILE A 210 SSBOND 1 CYS A 219 CYS A 251 1555 1555 2.00 SSBOND 2 CYS A 221 CYS A 271 1555 1555 2.08 SITE 1 AC1 6 THR A 36 ASN A 38 GLU A 39 ASP A 52 SITE 2 AC1 6 LYS A 54 LYS A 74 SITE 1 AC2 5 TYR A 137 THR A 160 ARG A 161 LYS A 184 SITE 2 AC2 5 ARG A 250 CRYST1 57.567 60.836 87.597 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011416 0.00000