data_3RFN # _entry.id 3RFN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RFN pdb_00003rfn 10.2210/pdb3rfn/pdb RCSB RCSB064871 ? ? WWPDB D_1000064871 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3RFN _pdbx_database_status.recvd_initial_deposition_date 2011-04-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Azoitei, M.L.' 1 'Ban, Y.A.' 2 'Julien, J.P.' 3 'Bryson, S.' 4 'Schroeter, A.' 5 'Kalyuzhniy, O.' 6 'Porter, J.R.' 7 'Adachi, Y.' 8 'Baker, D.' 9 'Szabo, E.' 10 'Pai, E.F.' 11 'Schief, W.R.' 12 # _citation.id primary _citation.title 'Computational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 415 _citation.page_first 175 _citation.page_last 192 _citation.year 2012 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22061265 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2011.10.003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Azoitei, M.L.' 1 ? primary 'Ban, Y.E.' 2 ? primary 'Julien, J.P.' 3 ? primary 'Bryson, S.' 4 ? primary 'Schroeter, A.' 5 ? primary 'Kalyuzhniy, O.' 6 ? primary 'Porter, J.R.' 7 ? primary 'Adachi, Y.' 8 ? primary 'Baker, D.' 9 ? primary 'Pai, E.F.' 10 ? primary 'Schief, W.R.' 11 ? # _cell.entry_id 3RFN _cell.length_a 93.8 _cell.length_b 36.1 _cell.length_c 46.3 _cell.angle_alpha 90.0 _cell.angle_beta 99.4 _cell.angle_gamma 90.0 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3RFN _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man BB_1wnu_001 18146.027 1 ? 'UNP V22A,L23A,E26A,Y31T' 'SEE REMARK 999' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 water nat water 18.015 88 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;YSIEVRTHSALHVVKGAVVKAAGSAAKWTTSTYVKGNKGVLIVKAALELDKWAWAAMEALANEKVKENAPIKIYELPREE AEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLELEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;YSIEVRTHSALHVVKGAVVKAAGSAAKWTTSTYVKGNKGVLIVKAALELDKWAWAAMEALANEKVKENAPIKIYELPREE AEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLELEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 SER n 1 3 ILE n 1 4 GLU n 1 5 VAL n 1 6 ARG n 1 7 THR n 1 8 HIS n 1 9 SER n 1 10 ALA n 1 11 LEU n 1 12 HIS n 1 13 VAL n 1 14 VAL n 1 15 LYS n 1 16 GLY n 1 17 ALA n 1 18 VAL n 1 19 VAL n 1 20 LYS n 1 21 ALA n 1 22 ALA n 1 23 GLY n 1 24 SER n 1 25 ALA n 1 26 ALA n 1 27 LYS n 1 28 TRP n 1 29 THR n 1 30 THR n 1 31 SER n 1 32 THR n 1 33 TYR n 1 34 VAL n 1 35 LYS n 1 36 GLY n 1 37 ASN n 1 38 LYS n 1 39 GLY n 1 40 VAL n 1 41 LEU n 1 42 ILE n 1 43 VAL n 1 44 LYS n 1 45 ALA n 1 46 ALA n 1 47 LEU n 1 48 GLU n 1 49 LEU n 1 50 ASP n 1 51 LYS n 1 52 TRP n 1 53 ALA n 1 54 TRP n 1 55 ALA n 1 56 ALA n 1 57 MET n 1 58 GLU n 1 59 ALA n 1 60 LEU n 1 61 ALA n 1 62 ASN n 1 63 GLU n 1 64 LYS n 1 65 VAL n 1 66 LYS n 1 67 GLU n 1 68 ASN n 1 69 ALA n 1 70 PRO n 1 71 ILE n 1 72 LYS n 1 73 ILE n 1 74 TYR n 1 75 GLU n 1 76 LEU n 1 77 PRO n 1 78 ARG n 1 79 GLU n 1 80 GLU n 1 81 ALA n 1 82 GLU n 1 83 LYS n 1 84 MET n 1 85 PHE n 1 86 GLY n 1 87 GLU n 1 88 ASP n 1 89 MET n 1 90 TYR n 1 91 ASP n 1 92 LEU n 1 93 PHE n 1 94 PRO n 1 95 VAL n 1 96 PRO n 1 97 GLU n 1 98 ASP n 1 99 VAL n 1 100 ARG n 1 101 ILE n 1 102 LEU n 1 103 LYS n 1 104 VAL n 1 105 VAL n 1 106 VAL n 1 107 ILE n 1 108 GLU n 1 109 ASP n 1 110 TRP n 1 111 ASN n 1 112 VAL n 1 113 ASN n 1 114 ALA n 1 115 CYS n 1 116 ASN n 1 117 LYS n 1 118 GLU n 1 119 HIS n 1 120 THR n 1 121 LYS n 1 122 THR n 1 123 THR n 1 124 GLY n 1 125 GLU n 1 126 ILE n 1 127 GLY n 1 128 PRO n 1 129 ILE n 1 130 LYS n 1 131 ILE n 1 132 ARG n 1 133 LYS n 1 134 VAL n 1 135 ARG n 1 136 PHE n 1 137 ARG n 1 138 LYS n 1 139 SER n 1 140 LYS n 1 141 GLY n 1 142 LEU n 1 143 LEU n 1 144 GLU n 1 145 ILE n 1 146 HIS n 1 147 PHE n 1 148 GLU n 1 149 LEU n 1 150 LEU n 1 151 GLU n 1 152 LEU n 1 153 GLU n 1 154 HIS n 1 155 HIS n 1 156 HIS n 1 157 HIS n 1 158 HIS n 1 159 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 1 44 ? ? 'alaXS, PH0574' ? 'ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3' ? ? ? ? 'Pyrococcus horikoshii' 70601 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample ? 60 153 ? ? 'alaXS, PH0574' ? 'ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3' ? ? ? ? 'Pyrococcus horikoshii' 70601 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALAXS_PYRHO O58307 1 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVK 2 ? 2 UNP ALAXS_PYRHO O58307 1 ;LANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKS KGLLEIHFELLELE ; 61 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3RFN A 1 ? 44 ? O58307 2 ? 45 ? 2 45 2 2 3RFN A 60 ? 153 ? O58307 61 ? 154 ? 61 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RFN ALA A 21 ? UNP O58307 VAL 22 'engineered mutation' 22 1 1 3RFN ALA A 22 ? UNP O58307 LEU 23 'engineered mutation' 23 2 1 3RFN ALA A 25 ? UNP O58307 GLU 26 'engineered mutation' 26 3 1 3RFN THR A 30 ? UNP O58307 TYR 31 'engineered mutation' 31 4 2 3RFN HIS A 154 ? UNP O58307 ? ? 'expression tag' 155 5 2 3RFN HIS A 155 ? UNP O58307 ? ? 'expression tag' 156 6 2 3RFN HIS A 156 ? UNP O58307 ? ? 'expression tag' 157 7 2 3RFN HIS A 157 ? UNP O58307 ? ? 'expression tag' 158 8 2 3RFN HIS A 158 ? UNP O58307 ? ? 'expression tag' 159 9 2 3RFN HIS A 159 ? UNP O58307 ? ? 'expression tag' 160 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3RFN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 42.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '2.8 M NaCl, 0.1 M Tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 93.2 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2010-12-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3RFN _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 17.00 _reflns.d_resolution_high 1.80 _reflns.number_obs 15316 _reflns.number_all 15677 _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.022 _reflns.pdbx_netI_over_sigmaI 25.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.75 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 89.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.132 _reflns_shell.meanI_over_sigI_obs 5.9 _reflns_shell.pdbx_redundancy 1.44 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3RFN _refine.ls_number_reflns_obs 13181 _refine.ls_number_reflns_all 14334 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.0 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 96.8 _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_all 0.219 _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.237 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 691 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1WNU' _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1201 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 1290 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 17.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.0069 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.6 ? ? ? ? 'X-RAY DIFFRACTION' # _struct.entry_id 3RFN _struct.title 'Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RFN _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'protein grafting, flexible backbone design, epitope-scaffold, HIV, immunogen design, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? GLY A 23 ? SER A 3 GLY A 24 1 ? 22 HELX_P HELX_P2 2 SER A 24 ? LYS A 27 ? SER A 25 LYS A 28 5 ? 4 HELX_P HELX_P3 3 TRP A 52 ? ASN A 68 ? TRP A 53 ASN A 69 1 ? 17 HELX_P HELX_P4 4 ARG A 78 ? GLY A 86 ? ARG A 79 GLY A 87 1 ? 9 HELX_P HELX_P5 5 GLU A 87 ? TYR A 90 ? GLU A 88 TYR A 91 5 ? 4 HELX_P HELX_P6 6 THR A 122 ? GLY A 127 ? THR A 123 GLY A 128 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B ZN . ZN ? ? ? 1_555 A HIS 8 NE2 ? ? A ZN 1 A HIS 9 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc2 metalc ? ? B ZN . ZN ? ? ? 1_555 A HIS 12 NE2 ? ? A ZN 1 A HIS 13 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc3 metalc ? ? B ZN . ZN ? ? ? 1_555 A CYS 115 SG ? ? A ZN 1 A CYS 116 1_555 ? ? ? ? ? ? ? 2.442 ? ? metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 A HIS 119 NE2 ? ? A ZN 1 A HIS 120 1_555 ? ? ? ? ? ? ? 2.204 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 28 ? LYS A 35 ? TRP A 29 LYS A 36 A 2 LYS A 38 ? LYS A 44 ? LYS A 39 LYS A 45 A 3 LEU A 142 ? GLU A 148 ? LEU A 143 GLU A 149 A 4 LYS A 130 ? ARG A 137 ? LYS A 131 ARG A 138 B 1 LYS A 72 ? PRO A 77 ? LYS A 73 PRO A 78 B 2 ILE A 101 ? ILE A 107 ? ILE A 102 ILE A 108 B 3 ASN A 111 ? ALA A 114 ? ASN A 112 ALA A 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 35 ? N LYS A 36 O LYS A 38 ? O LYS A 39 A 2 3 N LEU A 41 ? N LEU A 42 O ILE A 145 ? O ILE A 146 A 3 4 O HIS A 146 ? O HIS A 147 N LYS A 133 ? N LYS A 134 B 1 2 N TYR A 74 ? N TYR A 75 O VAL A 104 ? O VAL A 105 B 2 3 N VAL A 105 ? N VAL A 106 O ASN A 113 ? O ASN A 114 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 8 ? HIS A 9 . ? 1_555 ? 2 AC1 4 HIS A 12 ? HIS A 13 . ? 1_555 ? 3 AC1 4 CYS A 115 ? CYS A 116 . ? 1_555 ? 4 AC1 4 HIS A 119 ? HIS A 120 . ? 1_555 ? # _database_PDB_matrix.entry_id 3RFN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3RFN _atom_sites.fract_transf_matrix[1][1] 0.010661 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001759 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027739 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021938 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 2 2 TYR TYR A . n A 1 2 SER 2 3 3 SER SER A . n A 1 3 ILE 3 4 4 ILE ILE A . n A 1 4 GLU 4 5 5 GLU GLU A . n A 1 5 VAL 5 6 6 VAL VAL A . n A 1 6 ARG 6 7 7 ARG ARG A . n A 1 7 THR 7 8 8 THR THR A . n A 1 8 HIS 8 9 9 HIS HIS A . n A 1 9 SER 9 10 10 SER SER A . n A 1 10 ALA 10 11 11 ALA ALA A . n A 1 11 LEU 11 12 12 LEU LEU A . n A 1 12 HIS 12 13 13 HIS HIS A . n A 1 13 VAL 13 14 14 VAL VAL A . n A 1 14 VAL 14 15 15 VAL VAL A . n A 1 15 LYS 15 16 16 LYS LYS A . n A 1 16 GLY 16 17 17 GLY GLY A . n A 1 17 ALA 17 18 18 ALA ALA A . n A 1 18 VAL 18 19 19 VAL VAL A . n A 1 19 VAL 19 20 20 VAL VAL A . n A 1 20 LYS 20 21 21 LYS LYS A . n A 1 21 ALA 21 22 22 ALA ALA A . n A 1 22 ALA 22 23 23 ALA ALA A . n A 1 23 GLY 23 24 24 GLY GLY A . n A 1 24 SER 24 25 25 SER SER A . n A 1 25 ALA 25 26 26 ALA ALA A . n A 1 26 ALA 26 27 27 ALA ALA A . n A 1 27 LYS 27 28 28 LYS LYS A . n A 1 28 TRP 28 29 29 TRP TRP A . n A 1 29 THR 29 30 30 THR THR A . n A 1 30 THR 30 31 31 THR THR A . n A 1 31 SER 31 32 32 SER SER A . n A 1 32 THR 32 33 33 THR THR A . n A 1 33 TYR 33 34 34 TYR TYR A . n A 1 34 VAL 34 35 35 VAL VAL A . n A 1 35 LYS 35 36 36 LYS LYS A . n A 1 36 GLY 36 37 37 GLY GLY A . n A 1 37 ASN 37 38 38 ASN ASN A . n A 1 38 LYS 38 39 39 LYS LYS A . n A 1 39 GLY 39 40 40 GLY GLY A . n A 1 40 VAL 40 41 41 VAL VAL A . n A 1 41 LEU 41 42 42 LEU LEU A . n A 1 42 ILE 42 43 43 ILE ILE A . n A 1 43 VAL 43 44 44 VAL VAL A . n A 1 44 LYS 44 45 45 LYS LYS A . n A 1 45 ALA 45 46 46 ALA ALA A . n A 1 46 ALA 46 47 47 ALA ALA A . n A 1 47 LEU 47 48 48 LEU LEU A . n A 1 48 GLU 48 49 49 GLU GLU A . n A 1 49 LEU 49 50 50 LEU LEU A . n A 1 50 ASP 50 51 51 ASP ASP A . n A 1 51 LYS 51 52 52 LYS LYS A . n A 1 52 TRP 52 53 53 TRP TRP A . n A 1 53 ALA 53 54 54 ALA ALA A . n A 1 54 TRP 54 55 55 TRP TRP A . n A 1 55 ALA 55 56 56 ALA ALA A . n A 1 56 ALA 56 57 57 ALA ALA A . n A 1 57 MET 57 58 58 MET MET A . n A 1 58 GLU 58 59 59 GLU GLU A . n A 1 59 ALA 59 60 60 ALA ALA A . n A 1 60 LEU 60 61 61 LEU LEU A . n A 1 61 ALA 61 62 62 ALA ALA A . n A 1 62 ASN 62 63 63 ASN ASN A . n A 1 63 GLU 63 64 64 GLU GLU A . n A 1 64 LYS 64 65 65 LYS LYS A . n A 1 65 VAL 65 66 66 VAL VAL A . n A 1 66 LYS 66 67 67 LYS LYS A . n A 1 67 GLU 67 68 68 GLU GLU A . n A 1 68 ASN 68 69 69 ASN ASN A . n A 1 69 ALA 69 70 70 ALA ALA A . n A 1 70 PRO 70 71 71 PRO PRO A . n A 1 71 ILE 71 72 72 ILE ILE A . n A 1 72 LYS 72 73 73 LYS LYS A . n A 1 73 ILE 73 74 74 ILE ILE A . n A 1 74 TYR 74 75 75 TYR TYR A . n A 1 75 GLU 75 76 76 GLU GLU A . n A 1 76 LEU 76 77 77 LEU LEU A . n A 1 77 PRO 77 78 78 PRO PRO A . n A 1 78 ARG 78 79 79 ARG ARG A . n A 1 79 GLU 79 80 80 GLU GLU A . n A 1 80 GLU 80 81 81 GLU GLU A . n A 1 81 ALA 81 82 82 ALA ALA A . n A 1 82 GLU 82 83 83 GLU GLU A . n A 1 83 LYS 83 84 84 LYS LYS A . n A 1 84 MET 84 85 85 MET MET A . n A 1 85 PHE 85 86 86 PHE PHE A . n A 1 86 GLY 86 87 87 GLY GLY A . n A 1 87 GLU 87 88 88 GLU GLU A . n A 1 88 ASP 88 89 89 ASP ASP A . n A 1 89 MET 89 90 90 MET MET A . n A 1 90 TYR 90 91 91 TYR TYR A . n A 1 91 ASP 91 92 92 ASP ASP A . n A 1 92 LEU 92 93 93 LEU LEU A . n A 1 93 PHE 93 94 94 PHE PHE A . n A 1 94 PRO 94 95 95 PRO PRO A . n A 1 95 VAL 95 96 96 VAL VAL A . n A 1 96 PRO 96 97 97 PRO PRO A . n A 1 97 GLU 97 98 98 GLU GLU A . n A 1 98 ASP 98 99 99 ASP ASP A . n A 1 99 VAL 99 100 100 VAL VAL A . n A 1 100 ARG 100 101 101 ARG ARG A . n A 1 101 ILE 101 102 102 ILE ILE A . n A 1 102 LEU 102 103 103 LEU LEU A . n A 1 103 LYS 103 104 104 LYS LYS A . n A 1 104 VAL 104 105 105 VAL VAL A . n A 1 105 VAL 105 106 106 VAL VAL A . n A 1 106 VAL 106 107 107 VAL VAL A . n A 1 107 ILE 107 108 108 ILE ILE A . n A 1 108 GLU 108 109 109 GLU GLU A . n A 1 109 ASP 109 110 110 ASP ASP A . n A 1 110 TRP 110 111 111 TRP TRP A . n A 1 111 ASN 111 112 112 ASN ASN A . n A 1 112 VAL 112 113 113 VAL VAL A . n A 1 113 ASN 113 114 114 ASN ASN A . n A 1 114 ALA 114 115 115 ALA ALA A . n A 1 115 CYS 115 116 116 CYS CYS A . n A 1 116 ASN 116 117 117 ASN ASN A . n A 1 117 LYS 117 118 118 LYS LYS A . n A 1 118 GLU 118 119 119 GLU GLU A . n A 1 119 HIS 119 120 120 HIS HIS A . n A 1 120 THR 120 121 121 THR THR A . n A 1 121 LYS 121 122 122 LYS LYS A . n A 1 122 THR 122 123 123 THR THR A . n A 1 123 THR 123 124 124 THR THR A . n A 1 124 GLY 124 125 125 GLY GLY A . n A 1 125 GLU 125 126 126 GLU GLU A . n A 1 126 ILE 126 127 127 ILE ILE A . n A 1 127 GLY 127 128 128 GLY GLY A . n A 1 128 PRO 128 129 129 PRO PRO A . n A 1 129 ILE 129 130 130 ILE ILE A . n A 1 130 LYS 130 131 131 LYS LYS A . n A 1 131 ILE 131 132 132 ILE ILE A . n A 1 132 ARG 132 133 133 ARG ARG A . n A 1 133 LYS 133 134 134 LYS LYS A . n A 1 134 VAL 134 135 135 VAL VAL A . n A 1 135 ARG 135 136 136 ARG ARG A . n A 1 136 PHE 136 137 137 PHE PHE A . n A 1 137 ARG 137 138 138 ARG ARG A . n A 1 138 LYS 138 139 139 LYS LYS A . n A 1 139 SER 139 140 140 SER SER A . n A 1 140 LYS 140 141 141 LYS LYS A . n A 1 141 GLY 141 142 142 GLY GLY A . n A 1 142 LEU 142 143 143 LEU LEU A . n A 1 143 LEU 143 144 144 LEU LEU A . n A 1 144 GLU 144 145 145 GLU GLU A . n A 1 145 ILE 145 146 146 ILE ILE A . n A 1 146 HIS 146 147 147 HIS HIS A . n A 1 147 PHE 147 148 148 PHE PHE A . n A 1 148 GLU 148 149 149 GLU GLU A . n A 1 149 LEU 149 150 150 LEU LEU A . n A 1 150 LEU 150 151 151 LEU LEU A . n A 1 151 GLU 151 152 152 GLU GLU A . n A 1 152 LEU 152 153 ? ? ? A . n A 1 153 GLU 153 154 ? ? ? A . n A 1 154 HIS 154 155 ? ? ? A . n A 1 155 HIS 155 156 ? ? ? A . n A 1 156 HIS 156 157 ? ? ? A . n A 1 157 HIS 157 158 ? ? ? A . n A 1 158 HIS 158 159 ? ? ? A . n A 1 159 HIS 159 160 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1 1 ZN ZN A . C 3 HOH 1 161 1 HOH HOH A . C 3 HOH 2 162 2 HOH HOH A . C 3 HOH 3 163 3 HOH HOH A . C 3 HOH 4 164 4 HOH HOH A . C 3 HOH 5 165 5 HOH HOH A . C 3 HOH 6 166 6 HOH HOH A . C 3 HOH 7 167 7 HOH HOH A . C 3 HOH 8 168 8 HOH HOH A . C 3 HOH 9 169 9 HOH HOH A . C 3 HOH 10 170 10 HOH HOH A . C 3 HOH 11 171 11 HOH HOH A . C 3 HOH 12 172 12 HOH HOH A . C 3 HOH 13 173 13 HOH HOH A . C 3 HOH 14 174 14 HOH HOH A . C 3 HOH 15 175 15 HOH HOH A . C 3 HOH 16 176 16 HOH HOH A . C 3 HOH 17 177 17 HOH HOH A . C 3 HOH 18 178 18 HOH HOH A . C 3 HOH 19 179 19 HOH HOH A . C 3 HOH 20 180 20 HOH HOH A . C 3 HOH 21 181 21 HOH HOH A . C 3 HOH 22 182 22 HOH HOH A . C 3 HOH 23 183 23 HOH HOH A . C 3 HOH 24 184 24 HOH HOH A . C 3 HOH 25 185 25 HOH HOH A . C 3 HOH 26 186 26 HOH HOH A . C 3 HOH 27 187 27 HOH HOH A . C 3 HOH 28 188 28 HOH HOH A . C 3 HOH 29 189 29 HOH HOH A . C 3 HOH 30 190 30 HOH HOH A . C 3 HOH 31 191 31 HOH HOH A . C 3 HOH 32 192 32 HOH HOH A . C 3 HOH 33 193 33 HOH HOH A . C 3 HOH 34 194 34 HOH HOH A . C 3 HOH 35 195 35 HOH HOH A . C 3 HOH 36 196 36 HOH HOH A . C 3 HOH 37 197 37 HOH HOH A . C 3 HOH 38 198 38 HOH HOH A . C 3 HOH 39 199 39 HOH HOH A . C 3 HOH 40 200 40 HOH HOH A . C 3 HOH 41 201 41 HOH HOH A . C 3 HOH 42 202 42 HOH HOH A . C 3 HOH 43 203 43 HOH HOH A . C 3 HOH 44 204 44 HOH HOH A . C 3 HOH 45 205 45 HOH HOH A . C 3 HOH 46 206 46 HOH HOH A . C 3 HOH 47 207 47 HOH HOH A . C 3 HOH 48 208 48 HOH HOH A . C 3 HOH 49 209 49 HOH HOH A . C 3 HOH 50 210 50 HOH HOH A . C 3 HOH 51 211 51 HOH HOH A . C 3 HOH 52 212 52 HOH HOH A . C 3 HOH 53 213 53 HOH HOH A . C 3 HOH 54 214 54 HOH HOH A . C 3 HOH 55 215 55 HOH HOH A . C 3 HOH 56 216 56 HOH HOH A . C 3 HOH 57 217 57 HOH HOH A . C 3 HOH 58 218 58 HOH HOH A . C 3 HOH 59 219 59 HOH HOH A . C 3 HOH 60 220 60 HOH HOH A . C 3 HOH 61 221 61 HOH HOH A . C 3 HOH 62 222 62 HOH HOH A . C 3 HOH 63 223 63 HOH HOH A . C 3 HOH 64 224 64 HOH HOH A . C 3 HOH 65 225 65 HOH HOH A . C 3 HOH 66 226 66 HOH HOH A . C 3 HOH 67 227 67 HOH HOH A . C 3 HOH 68 228 68 HOH HOH A . C 3 HOH 69 229 69 HOH HOH A . C 3 HOH 70 230 70 HOH HOH A . C 3 HOH 71 231 71 HOH HOH A . C 3 HOH 72 232 72 HOH HOH A . C 3 HOH 73 233 73 HOH HOH A . C 3 HOH 74 234 74 HOH HOH A . C 3 HOH 75 235 75 HOH HOH A . C 3 HOH 76 236 76 HOH HOH A . C 3 HOH 77 237 77 HOH HOH A . C 3 HOH 78 238 78 HOH HOH A . C 3 HOH 79 239 79 HOH HOH A . C 3 HOH 80 240 80 HOH HOH A . C 3 HOH 81 241 81 HOH HOH A . C 3 HOH 82 242 82 HOH HOH A . C 3 HOH 83 243 83 HOH HOH A . C 3 HOH 84 244 84 HOH HOH A . C 3 HOH 85 245 85 HOH HOH A . C 3 HOH 86 246 86 HOH HOH A . C 3 HOH 87 247 87 HOH HOH A . C 3 HOH 88 248 88 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 8 ? A HIS 9 ? 1_555 ZN ? B ZN . ? A ZN 1 ? 1_555 NE2 ? A HIS 12 ? A HIS 13 ? 1_555 112.6 ? 2 NE2 ? A HIS 8 ? A HIS 9 ? 1_555 ZN ? B ZN . ? A ZN 1 ? 1_555 SG ? A CYS 115 ? A CYS 116 ? 1_555 91.0 ? 3 NE2 ? A HIS 12 ? A HIS 13 ? 1_555 ZN ? B ZN . ? A ZN 1 ? 1_555 SG ? A CYS 115 ? A CYS 116 ? 1_555 141.2 ? 4 NE2 ? A HIS 8 ? A HIS 9 ? 1_555 ZN ? B ZN . ? A ZN 1 ? 1_555 NE2 ? A HIS 119 ? A HIS 120 ? 1_555 90.4 ? 5 NE2 ? A HIS 12 ? A HIS 13 ? 1_555 ZN ? B ZN . ? A ZN 1 ? 1_555 NE2 ? A HIS 119 ? A HIS 120 ? 1_555 98.1 ? 6 SG ? A CYS 115 ? A CYS 116 ? 1_555 ZN ? B ZN . ? A ZN 1 ? 1_555 NE2 ? A HIS 119 ? A HIS 120 ? 1_555 112.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-09 2 'Structure model' 1 1 2011-11-23 3 'Structure model' 1 2 2012-01-18 4 'Structure model' 1 3 2017-07-26 5 'Structure model' 1 4 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 4 'Structure model' 'Source and taxonomy' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' pdbx_struct_conn_angle 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_ref_seq_dif 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.value' 14 5 'Structure model' '_struct_conn.pdbx_dist_value' 15 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 5 'Structure model' '_struct_ref_seq_dif.details' 28 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.3 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3RFN _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;PROTEIN CONSTRUCT CONSISTS OF UNP RESIDUES 2-154 WITH A C-TERMINAL EXPRESSION TAG AND UNP RESIDUES 46-60 (FDRKPSDEEIREIER) REPLACED BY EPITOPE AALELDKWAWAAMEA ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 27 ? ? -148.98 35.56 2 1 LEU A 93 ? ? -81.80 49.69 3 1 PRO A 97 ? ? -28.36 131.74 4 1 GLU A 109 ? ? -36.07 123.95 5 1 TRP A 111 ? ? -148.12 -53.57 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 153 ? A LEU 152 2 1 Y 1 A GLU 154 ? A GLU 153 3 1 Y 1 A HIS 155 ? A HIS 154 4 1 Y 1 A HIS 156 ? A HIS 155 5 1 Y 1 A HIS 157 ? A HIS 156 6 1 Y 1 A HIS 158 ? A HIS 157 7 1 Y 1 A HIS 159 ? A HIS 158 8 1 Y 1 A HIS 160 ? A HIS 159 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLU N N N N 88 GLU CA C N S 89 GLU C C N N 90 GLU O O N N 91 GLU CB C N N 92 GLU CG C N N 93 GLU CD C N N 94 GLU OE1 O N N 95 GLU OE2 O N N 96 GLU OXT O N N 97 GLU H H N N 98 GLU H2 H N N 99 GLU HA H N N 100 GLU HB2 H N N 101 GLU HB3 H N N 102 GLU HG2 H N N 103 GLU HG3 H N N 104 GLU HE2 H N N 105 GLU HXT H N N 106 GLY N N N N 107 GLY CA C N N 108 GLY C C N N 109 GLY O O N N 110 GLY OXT O N N 111 GLY H H N N 112 GLY H2 H N N 113 GLY HA2 H N N 114 GLY HA3 H N N 115 GLY HXT H N N 116 HIS N N N N 117 HIS CA C N S 118 HIS C C N N 119 HIS O O N N 120 HIS CB C N N 121 HIS CG C Y N 122 HIS ND1 N Y N 123 HIS CD2 C Y N 124 HIS CE1 C Y N 125 HIS NE2 N Y N 126 HIS OXT O N N 127 HIS H H N N 128 HIS H2 H N N 129 HIS HA H N N 130 HIS HB2 H N N 131 HIS HB3 H N N 132 HIS HD1 H N N 133 HIS HD2 H N N 134 HIS HE1 H N N 135 HIS HE2 H N N 136 HIS HXT H N N 137 HOH O O N N 138 HOH H1 H N N 139 HOH H2 H N N 140 ILE N N N N 141 ILE CA C N S 142 ILE C C N N 143 ILE O O N N 144 ILE CB C N S 145 ILE CG1 C N N 146 ILE CG2 C N N 147 ILE CD1 C N N 148 ILE OXT O N N 149 ILE H H N N 150 ILE H2 H N N 151 ILE HA H N N 152 ILE HB H N N 153 ILE HG12 H N N 154 ILE HG13 H N N 155 ILE HG21 H N N 156 ILE HG22 H N N 157 ILE HG23 H N N 158 ILE HD11 H N N 159 ILE HD12 H N N 160 ILE HD13 H N N 161 ILE HXT H N N 162 LEU N N N N 163 LEU CA C N S 164 LEU C C N N 165 LEU O O N N 166 LEU CB C N N 167 LEU CG C N N 168 LEU CD1 C N N 169 LEU CD2 C N N 170 LEU OXT O N N 171 LEU H H N N 172 LEU H2 H N N 173 LEU HA H N N 174 LEU HB2 H N N 175 LEU HB3 H N N 176 LEU HG H N N 177 LEU HD11 H N N 178 LEU HD12 H N N 179 LEU HD13 H N N 180 LEU HD21 H N N 181 LEU HD22 H N N 182 LEU HD23 H N N 183 LEU HXT H N N 184 LYS N N N N 185 LYS CA C N S 186 LYS C C N N 187 LYS O O N N 188 LYS CB C N N 189 LYS CG C N N 190 LYS CD C N N 191 LYS CE C N N 192 LYS NZ N N N 193 LYS OXT O N N 194 LYS H H N N 195 LYS H2 H N N 196 LYS HA H N N 197 LYS HB2 H N N 198 LYS HB3 H N N 199 LYS HG2 H N N 200 LYS HG3 H N N 201 LYS HD2 H N N 202 LYS HD3 H N N 203 LYS HE2 H N N 204 LYS HE3 H N N 205 LYS HZ1 H N N 206 LYS HZ2 H N N 207 LYS HZ3 H N N 208 LYS HXT H N N 209 MET N N N N 210 MET CA C N S 211 MET C C N N 212 MET O O N N 213 MET CB C N N 214 MET CG C N N 215 MET SD S N N 216 MET CE C N N 217 MET OXT O N N 218 MET H H N N 219 MET H2 H N N 220 MET HA H N N 221 MET HB2 H N N 222 MET HB3 H N N 223 MET HG2 H N N 224 MET HG3 H N N 225 MET HE1 H N N 226 MET HE2 H N N 227 MET HE3 H N N 228 MET HXT H N N 229 PHE N N N N 230 PHE CA C N S 231 PHE C C N N 232 PHE O O N N 233 PHE CB C N N 234 PHE CG C Y N 235 PHE CD1 C Y N 236 PHE CD2 C Y N 237 PHE CE1 C Y N 238 PHE CE2 C Y N 239 PHE CZ C Y N 240 PHE OXT O N N 241 PHE H H N N 242 PHE H2 H N N 243 PHE HA H N N 244 PHE HB2 H N N 245 PHE HB3 H N N 246 PHE HD1 H N N 247 PHE HD2 H N N 248 PHE HE1 H N N 249 PHE HE2 H N N 250 PHE HZ H N N 251 PHE HXT H N N 252 PRO N N N N 253 PRO CA C N S 254 PRO C C N N 255 PRO O O N N 256 PRO CB C N N 257 PRO CG C N N 258 PRO CD C N N 259 PRO OXT O N N 260 PRO H H N N 261 PRO HA H N N 262 PRO HB2 H N N 263 PRO HB3 H N N 264 PRO HG2 H N N 265 PRO HG3 H N N 266 PRO HD2 H N N 267 PRO HD3 H N N 268 PRO HXT H N N 269 SER N N N N 270 SER CA C N S 271 SER C C N N 272 SER O O N N 273 SER CB C N N 274 SER OG O N N 275 SER OXT O N N 276 SER H H N N 277 SER H2 H N N 278 SER HA H N N 279 SER HB2 H N N 280 SER HB3 H N N 281 SER HG H N N 282 SER HXT H N N 283 THR N N N N 284 THR CA C N S 285 THR C C N N 286 THR O O N N 287 THR CB C N R 288 THR OG1 O N N 289 THR CG2 C N N 290 THR OXT O N N 291 THR H H N N 292 THR H2 H N N 293 THR HA H N N 294 THR HB H N N 295 THR HG1 H N N 296 THR HG21 H N N 297 THR HG22 H N N 298 THR HG23 H N N 299 THR HXT H N N 300 TRP N N N N 301 TRP CA C N S 302 TRP C C N N 303 TRP O O N N 304 TRP CB C N N 305 TRP CG C Y N 306 TRP CD1 C Y N 307 TRP CD2 C Y N 308 TRP NE1 N Y N 309 TRP CE2 C Y N 310 TRP CE3 C Y N 311 TRP CZ2 C Y N 312 TRP CZ3 C Y N 313 TRP CH2 C Y N 314 TRP OXT O N N 315 TRP H H N N 316 TRP H2 H N N 317 TRP HA H N N 318 TRP HB2 H N N 319 TRP HB3 H N N 320 TRP HD1 H N N 321 TRP HE1 H N N 322 TRP HE3 H N N 323 TRP HZ2 H N N 324 TRP HZ3 H N N 325 TRP HH2 H N N 326 TRP HXT H N N 327 TYR N N N N 328 TYR CA C N S 329 TYR C C N N 330 TYR O O N N 331 TYR CB C N N 332 TYR CG C Y N 333 TYR CD1 C Y N 334 TYR CD2 C Y N 335 TYR CE1 C Y N 336 TYR CE2 C Y N 337 TYR CZ C Y N 338 TYR OH O N N 339 TYR OXT O N N 340 TYR H H N N 341 TYR H2 H N N 342 TYR HA H N N 343 TYR HB2 H N N 344 TYR HB3 H N N 345 TYR HD1 H N N 346 TYR HD2 H N N 347 TYR HE1 H N N 348 TYR HE2 H N N 349 TYR HH H N N 350 TYR HXT H N N 351 VAL N N N N 352 VAL CA C N S 353 VAL C C N N 354 VAL O O N N 355 VAL CB C N N 356 VAL CG1 C N N 357 VAL CG2 C N N 358 VAL OXT O N N 359 VAL H H N N 360 VAL H2 H N N 361 VAL HA H N N 362 VAL HB H N N 363 VAL HG11 H N N 364 VAL HG12 H N N 365 VAL HG13 H N N 366 VAL HG21 H N N 367 VAL HG22 H N N 368 VAL HG23 H N N 369 VAL HXT H N N 370 ZN ZN ZN N N 371 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLU N CA sing N N 83 GLU N H sing N N 84 GLU N H2 sing N N 85 GLU CA C sing N N 86 GLU CA CB sing N N 87 GLU CA HA sing N N 88 GLU C O doub N N 89 GLU C OXT sing N N 90 GLU CB CG sing N N 91 GLU CB HB2 sing N N 92 GLU CB HB3 sing N N 93 GLU CG CD sing N N 94 GLU CG HG2 sing N N 95 GLU CG HG3 sing N N 96 GLU CD OE1 doub N N 97 GLU CD OE2 sing N N 98 GLU OE2 HE2 sing N N 99 GLU OXT HXT sing N N 100 GLY N CA sing N N 101 GLY N H sing N N 102 GLY N H2 sing N N 103 GLY CA C sing N N 104 GLY CA HA2 sing N N 105 GLY CA HA3 sing N N 106 GLY C O doub N N 107 GLY C OXT sing N N 108 GLY OXT HXT sing N N 109 HIS N CA sing N N 110 HIS N H sing N N 111 HIS N H2 sing N N 112 HIS CA C sing N N 113 HIS CA CB sing N N 114 HIS CA HA sing N N 115 HIS C O doub N N 116 HIS C OXT sing N N 117 HIS CB CG sing N N 118 HIS CB HB2 sing N N 119 HIS CB HB3 sing N N 120 HIS CG ND1 sing Y N 121 HIS CG CD2 doub Y N 122 HIS ND1 CE1 doub Y N 123 HIS ND1 HD1 sing N N 124 HIS CD2 NE2 sing Y N 125 HIS CD2 HD2 sing N N 126 HIS CE1 NE2 sing Y N 127 HIS CE1 HE1 sing N N 128 HIS NE2 HE2 sing N N 129 HIS OXT HXT sing N N 130 HOH O H1 sing N N 131 HOH O H2 sing N N 132 ILE N CA sing N N 133 ILE N H sing N N 134 ILE N H2 sing N N 135 ILE CA C sing N N 136 ILE CA CB sing N N 137 ILE CA HA sing N N 138 ILE C O doub N N 139 ILE C OXT sing N N 140 ILE CB CG1 sing N N 141 ILE CB CG2 sing N N 142 ILE CB HB sing N N 143 ILE CG1 CD1 sing N N 144 ILE CG1 HG12 sing N N 145 ILE CG1 HG13 sing N N 146 ILE CG2 HG21 sing N N 147 ILE CG2 HG22 sing N N 148 ILE CG2 HG23 sing N N 149 ILE CD1 HD11 sing N N 150 ILE CD1 HD12 sing N N 151 ILE CD1 HD13 sing N N 152 ILE OXT HXT sing N N 153 LEU N CA sing N N 154 LEU N H sing N N 155 LEU N H2 sing N N 156 LEU CA C sing N N 157 LEU CA CB sing N N 158 LEU CA HA sing N N 159 LEU C O doub N N 160 LEU C OXT sing N N 161 LEU CB CG sing N N 162 LEU CB HB2 sing N N 163 LEU CB HB3 sing N N 164 LEU CG CD1 sing N N 165 LEU CG CD2 sing N N 166 LEU CG HG sing N N 167 LEU CD1 HD11 sing N N 168 LEU CD1 HD12 sing N N 169 LEU CD1 HD13 sing N N 170 LEU CD2 HD21 sing N N 171 LEU CD2 HD22 sing N N 172 LEU CD2 HD23 sing N N 173 LEU OXT HXT sing N N 174 LYS N CA sing N N 175 LYS N H sing N N 176 LYS N H2 sing N N 177 LYS CA C sing N N 178 LYS CA CB sing N N 179 LYS CA HA sing N N 180 LYS C O doub N N 181 LYS C OXT sing N N 182 LYS CB CG sing N N 183 LYS CB HB2 sing N N 184 LYS CB HB3 sing N N 185 LYS CG CD sing N N 186 LYS CG HG2 sing N N 187 LYS CG HG3 sing N N 188 LYS CD CE sing N N 189 LYS CD HD2 sing N N 190 LYS CD HD3 sing N N 191 LYS CE NZ sing N N 192 LYS CE HE2 sing N N 193 LYS CE HE3 sing N N 194 LYS NZ HZ1 sing N N 195 LYS NZ HZ2 sing N N 196 LYS NZ HZ3 sing N N 197 LYS OXT HXT sing N N 198 MET N CA sing N N 199 MET N H sing N N 200 MET N H2 sing N N 201 MET CA C sing N N 202 MET CA CB sing N N 203 MET CA HA sing N N 204 MET C O doub N N 205 MET C OXT sing N N 206 MET CB CG sing N N 207 MET CB HB2 sing N N 208 MET CB HB3 sing N N 209 MET CG SD sing N N 210 MET CG HG2 sing N N 211 MET CG HG3 sing N N 212 MET SD CE sing N N 213 MET CE HE1 sing N N 214 MET CE HE2 sing N N 215 MET CE HE3 sing N N 216 MET OXT HXT sing N N 217 PHE N CA sing N N 218 PHE N H sing N N 219 PHE N H2 sing N N 220 PHE CA C sing N N 221 PHE CA CB sing N N 222 PHE CA HA sing N N 223 PHE C O doub N N 224 PHE C OXT sing N N 225 PHE CB CG sing N N 226 PHE CB HB2 sing N N 227 PHE CB HB3 sing N N 228 PHE CG CD1 doub Y N 229 PHE CG CD2 sing Y N 230 PHE CD1 CE1 sing Y N 231 PHE CD1 HD1 sing N N 232 PHE CD2 CE2 doub Y N 233 PHE CD2 HD2 sing N N 234 PHE CE1 CZ doub Y N 235 PHE CE1 HE1 sing N N 236 PHE CE2 CZ sing Y N 237 PHE CE2 HE2 sing N N 238 PHE CZ HZ sing N N 239 PHE OXT HXT sing N N 240 PRO N CA sing N N 241 PRO N CD sing N N 242 PRO N H sing N N 243 PRO CA C sing N N 244 PRO CA CB sing N N 245 PRO CA HA sing N N 246 PRO C O doub N N 247 PRO C OXT sing N N 248 PRO CB CG sing N N 249 PRO CB HB2 sing N N 250 PRO CB HB3 sing N N 251 PRO CG CD sing N N 252 PRO CG HG2 sing N N 253 PRO CG HG3 sing N N 254 PRO CD HD2 sing N N 255 PRO CD HD3 sing N N 256 PRO OXT HXT sing N N 257 SER N CA sing N N 258 SER N H sing N N 259 SER N H2 sing N N 260 SER CA C sing N N 261 SER CA CB sing N N 262 SER CA HA sing N N 263 SER C O doub N N 264 SER C OXT sing N N 265 SER CB OG sing N N 266 SER CB HB2 sing N N 267 SER CB HB3 sing N N 268 SER OG HG sing N N 269 SER OXT HXT sing N N 270 THR N CA sing N N 271 THR N H sing N N 272 THR N H2 sing N N 273 THR CA C sing N N 274 THR CA CB sing N N 275 THR CA HA sing N N 276 THR C O doub N N 277 THR C OXT sing N N 278 THR CB OG1 sing N N 279 THR CB CG2 sing N N 280 THR CB HB sing N N 281 THR OG1 HG1 sing N N 282 THR CG2 HG21 sing N N 283 THR CG2 HG22 sing N N 284 THR CG2 HG23 sing N N 285 THR OXT HXT sing N N 286 TRP N CA sing N N 287 TRP N H sing N N 288 TRP N H2 sing N N 289 TRP CA C sing N N 290 TRP CA CB sing N N 291 TRP CA HA sing N N 292 TRP C O doub N N 293 TRP C OXT sing N N 294 TRP CB CG sing N N 295 TRP CB HB2 sing N N 296 TRP CB HB3 sing N N 297 TRP CG CD1 doub Y N 298 TRP CG CD2 sing Y N 299 TRP CD1 NE1 sing Y N 300 TRP CD1 HD1 sing N N 301 TRP CD2 CE2 doub Y N 302 TRP CD2 CE3 sing Y N 303 TRP NE1 CE2 sing Y N 304 TRP NE1 HE1 sing N N 305 TRP CE2 CZ2 sing Y N 306 TRP CE3 CZ3 doub Y N 307 TRP CE3 HE3 sing N N 308 TRP CZ2 CH2 doub Y N 309 TRP CZ2 HZ2 sing N N 310 TRP CZ3 CH2 sing Y N 311 TRP CZ3 HZ3 sing N N 312 TRP CH2 HH2 sing N N 313 TRP OXT HXT sing N N 314 TYR N CA sing N N 315 TYR N H sing N N 316 TYR N H2 sing N N 317 TYR CA C sing N N 318 TYR CA CB sing N N 319 TYR CA HA sing N N 320 TYR C O doub N N 321 TYR C OXT sing N N 322 TYR CB CG sing N N 323 TYR CB HB2 sing N N 324 TYR CB HB3 sing N N 325 TYR CG CD1 doub Y N 326 TYR CG CD2 sing Y N 327 TYR CD1 CE1 sing Y N 328 TYR CD1 HD1 sing N N 329 TYR CD2 CE2 doub Y N 330 TYR CD2 HD2 sing N N 331 TYR CE1 CZ doub Y N 332 TYR CE1 HE1 sing N N 333 TYR CE2 CZ sing Y N 334 TYR CE2 HE2 sing N N 335 TYR CZ OH sing N N 336 TYR OH HH sing N N 337 TYR OXT HXT sing N N 338 VAL N CA sing N N 339 VAL N H sing N N 340 VAL N H2 sing N N 341 VAL CA C sing N N 342 VAL CA CB sing N N 343 VAL CA HA sing N N 344 VAL C O doub N N 345 VAL C OXT sing N N 346 VAL CB CG1 sing N N 347 VAL CB CG2 sing N N 348 VAL CB HB sing N N 349 VAL CG1 HG11 sing N N 350 VAL CG1 HG12 sing N N 351 VAL CG1 HG13 sing N N 352 VAL CG2 HG21 sing N N 353 VAL CG2 HG22 sing N N 354 VAL CG2 HG23 sing N N 355 VAL OXT HXT sing N N 356 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1WNU _pdbx_initial_refinement_model.details 'PDB ENTRY 1WNU' #