HEADER STRUCTURAL PROTEIN 09-APR-11 3RGU TITLE STRUCTURE OF FAP-NRA AT PH 5.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIMBRIAE-ASSOCIATED PROTEIN FAP1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: THE ALPHA SUBDOMAIN OF THE MAJOR NON-REPEAT UNIT OF FAP1 COMPND 5 FIMBRIAE, RESIDUES 184-299; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PARASANGUINIS; SOURCE 3 ORGANISM_TAXID: 1318; SOURCE 4 STRAIN: FW213; SOURCE 5 GENE: FAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS HELICAL BUNDLE, CELL WALL, PEPTIDOGLYCAN-ANCHOR, ADHESION, DENTAL KEYWDS 2 CARIES, PH, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GARNETT,S.J.MATTHEWS REVDAT 4 13-SEP-23 3RGU 1 HETSYN REVDAT 3 29-JUL-20 3RGU 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 SITE REVDAT 2 01-FEB-12 3RGU 1 JRNL REVDAT 1 28-DEC-11 3RGU 0 JRNL AUTH J.A.GARNETT,P.J.SIMPSON,J.TAYLOR,S.V.BENJAMIN,C.TAGLIAFERRI, JRNL AUTH 2 E.COTA,Y.Y.CHEN,H.WU,S.MATTHEWS JRNL TITL STRUCTURAL INSIGHT INTO THE ROLE OF STREPTOCOCCUS JRNL TITL 2 PARASANGUINIS FAP1 WITHIN ORAL BIOFILM FORMATION. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 417 421 2012 JRNL REFN ISSN 0006-291X JRNL PMID 22166217 JRNL DOI 10.1016/J.BBRC.2011.11.131 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 16333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2538 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 102.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.301 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2599 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3534 ; 1.462 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 346 ; 6.967 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;37.494 ;28.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;19.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.263 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1871 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3RGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17284 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 37.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2KUB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M NA/K PHOSPHATE, PH 5.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.99000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.94250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.94250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.48500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.94250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.94250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.49500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.94250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.94250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.48500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.94250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.94250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.49500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.99000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 100 REMARK 465 ARG A 101 REMARK 465 GLY A 102 REMARK 465 SER A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 GLY A 110 REMARK 465 LEU A 111 REMARK 465 VAL A 112 REMARK 465 PRO A 113 REMARK 465 ARG A 114 REMARK 465 GLY A 115 REMARK 465 SER A 116 REMARK 465 LYS A 117 REMARK 465 GLY A 118 REMARK 465 THR A 119 REMARK 465 GLU A 120 REMARK 465 GLU A 121 REMARK 465 LYS A 122 REMARK 465 GLN A 123 REMARK 465 GLY A 212 REMARK 465 GLN A 213 REMARK 465 ILE A 214 REMARK 465 TYR A 215 REMARK 465 ALA A 216 REMARK 465 VAL A 217 REMARK 465 LEU A 218 REMARK 465 ASN A 219 REMARK 465 ASN A 220 REMARK 465 THR A 221 REMARK 465 GLU A 222 REMARK 465 ALA A 223 REMARK 465 SER A 224 REMARK 465 ARG A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 THR A 228 REMARK 465 LEU A 229 REMARK 465 ARG A 230 REMARK 465 SER A 231 REMARK 465 MET B 100 REMARK 465 ARG B 101 REMARK 465 GLY B 102 REMARK 465 SER B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 GLY B 110 REMARK 465 LEU B 111 REMARK 465 VAL B 112 REMARK 465 PRO B 113 REMARK 465 ARG B 114 REMARK 465 GLY B 115 REMARK 465 SER B 116 REMARK 465 LYS B 117 REMARK 465 GLY B 118 REMARK 465 THR B 119 REMARK 465 GLU B 120 REMARK 465 GLU B 121 REMARK 465 LYS B 122 REMARK 465 GLN B 123 REMARK 465 ASP B 124 REMARK 465 GLY B 212 REMARK 465 GLN B 213 REMARK 465 ILE B 214 REMARK 465 TYR B 215 REMARK 465 ALA B 216 REMARK 465 VAL B 217 REMARK 465 LEU B 218 REMARK 465 ASN B 219 REMARK 465 ASN B 220 REMARK 465 THR B 221 REMARK 465 GLU B 222 REMARK 465 ALA B 223 REMARK 465 SER B 224 REMARK 465 ARG B 225 REMARK 465 ALA B 226 REMARK 465 ALA B 227 REMARK 465 THR B 228 REMARK 465 LEU B 229 REMARK 465 ARG B 230 REMARK 465 SER B 231 REMARK 465 MET C 100 REMARK 465 ARG C 101 REMARK 465 GLY C 102 REMARK 465 SER C 103 REMARK 465 HIS C 104 REMARK 465 HIS C 105 REMARK 465 HIS C 106 REMARK 465 HIS C 107 REMARK 465 HIS C 108 REMARK 465 HIS C 109 REMARK 465 GLY C 110 REMARK 465 LEU C 111 REMARK 465 VAL C 112 REMARK 465 PRO C 113 REMARK 465 ARG C 114 REMARK 465 GLY C 115 REMARK 465 SER C 116 REMARK 465 LYS C 117 REMARK 465 GLY C 118 REMARK 465 THR C 119 REMARK 465 GLU C 120 REMARK 465 GLU C 121 REMARK 465 LYS C 122 REMARK 465 GLN C 123 REMARK 465 ASP C 124 REMARK 465 PRO C 210 REMARK 465 ASN C 211 REMARK 465 GLY C 212 REMARK 465 GLN C 213 REMARK 465 ILE C 214 REMARK 465 TYR C 215 REMARK 465 ALA C 216 REMARK 465 VAL C 217 REMARK 465 LEU C 218 REMARK 465 ASN C 219 REMARK 465 ASN C 220 REMARK 465 THR C 221 REMARK 465 GLU C 222 REMARK 465 ALA C 223 REMARK 465 SER C 224 REMARK 465 ARG C 225 REMARK 465 ALA C 226 REMARK 465 ALA C 227 REMARK 465 THR C 228 REMARK 465 LEU C 229 REMARK 465 ARG C 230 REMARK 465 SER C 231 REMARK 465 MET D 100 REMARK 465 ARG D 101 REMARK 465 GLY D 102 REMARK 465 SER D 103 REMARK 465 HIS D 104 REMARK 465 HIS D 105 REMARK 465 HIS D 106 REMARK 465 HIS D 107 REMARK 465 HIS D 108 REMARK 465 HIS D 109 REMARK 465 GLY D 110 REMARK 465 LEU D 111 REMARK 465 VAL D 112 REMARK 465 PRO D 113 REMARK 465 ARG D 114 REMARK 465 GLY D 115 REMARK 465 SER D 116 REMARK 465 LYS D 117 REMARK 465 GLY D 118 REMARK 465 THR D 119 REMARK 465 GLU D 120 REMARK 465 GLU D 121 REMARK 465 LYS D 122 REMARK 465 GLN D 123 REMARK 465 PRO D 210 REMARK 465 ASN D 211 REMARK 465 GLY D 212 REMARK 465 GLN D 213 REMARK 465 ILE D 214 REMARK 465 TYR D 215 REMARK 465 ALA D 216 REMARK 465 VAL D 217 REMARK 465 LEU D 218 REMARK 465 ASN D 219 REMARK 465 ASN D 220 REMARK 465 THR D 221 REMARK 465 GLU D 222 REMARK 465 ALA D 223 REMARK 465 SER D 224 REMARK 465 ARG D 225 REMARK 465 ALA D 226 REMARK 465 ALA D 227 REMARK 465 THR D 228 REMARK 465 LEU D 229 REMARK 465 ARG D 230 REMARK 465 SER D 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 ASN A 209 CG OD1 ND2 REMARK 470 SER B 125 OG REMARK 470 VAL B 126 CG1 CG2 REMARK 470 ARG B 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 154 CG CD OE1 OE2 REMARK 470 ASP B 179 CG OD1 OD2 REMARK 470 ASN B 181 CG OD1 ND2 REMARK 470 GLN B 188 CG CD OE1 NE2 REMARK 470 SER C 125 OG REMARK 470 VAL C 126 CG1 CG2 REMARK 470 ARG C 127 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 132 CG CD CE NZ REMARK 470 LYS C 147 CE NZ REMARK 470 GLU C 171 CG CD OE1 OE2 REMARK 470 GLN C 188 CG CD OE1 NE2 REMARK 470 ASP D 124 CG OD1 OD2 REMARK 470 ARG D 127 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 132 CG CD CE NZ REMARK 470 LYS D 147 CD CE NZ REMARK 470 GLU D 154 CG CD OE1 OE2 REMARK 470 LYS D 207 CD CE NZ REMARK 470 ASN D 209 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 126 161.44 -48.24 REMARK 500 ARG A 127 -11.85 -48.77 REMARK 500 GLU A 128 56.57 -106.76 REMARK 500 ASN A 129 42.08 -96.39 REMARK 500 ASP A 131 -37.76 -39.37 REMARK 500 LYS A 147 -7.86 -59.57 REMARK 500 ASN A 181 -81.70 -102.58 REMARK 500 ALA A 182 -127.19 43.85 REMARK 500 LEU B 130 -36.70 -36.04 REMARK 500 THR B 173 -39.99 -38.84 REMARK 500 PRO B 210 75.26 -62.19 REMARK 500 GLU C 128 21.74 -151.28 REMARK 500 ASN C 129 8.19 -65.80 REMARK 500 ASP C 179 96.80 -67.10 REMARK 500 PRO C 180 -6.70 -56.28 REMARK 500 ALA C 182 153.04 -44.68 REMARK 500 GLU D 128 -4.77 -53.06 REMARK 500 ILE D 177 0.69 -62.39 REMARK 500 PRO D 180 -9.88 -51.96 REMARK 500 ASN D 181 79.43 -151.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 128 ASN A 129 145.06 REMARK 500 GLU C 128 ASN C 129 144.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KUB RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ALPHA SUBDOMAIN OF THE MAJOR NON-REPEAT REMARK 900 UNIT OF FAP1 FIMBRIAE OF STREPTOCOCCUS PARASANGUIS AT PH 8.0 DBREF 3RGU A 116 231 UNP Q9ZFF9 Q9ZFF9_STRPA 184 299 DBREF 3RGU B 116 231 UNP Q9ZFF9 Q9ZFF9_STRPA 184 299 DBREF 3RGU C 116 231 UNP Q9ZFF9 Q9ZFF9_STRPA 184 299 DBREF 3RGU D 116 231 UNP Q9ZFF9 Q9ZFF9_STRPA 184 299 SEQADV 3RGU MET A 100 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU ARG A 101 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY A 102 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU SER A 103 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS A 104 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS A 105 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS A 106 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS A 107 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS A 108 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS A 109 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY A 110 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU LEU A 111 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU VAL A 112 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU PRO A 113 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU ARG A 114 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY A 115 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU MET B 100 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU ARG B 101 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY B 102 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU SER B 103 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS B 104 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS B 105 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS B 106 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS B 107 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS B 108 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS B 109 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY B 110 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU LEU B 111 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU VAL B 112 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU PRO B 113 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU ARG B 114 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY B 115 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU MET C 100 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU ARG C 101 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY C 102 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU SER C 103 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS C 104 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS C 105 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS C 106 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS C 107 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS C 108 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS C 109 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY C 110 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU LEU C 111 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU VAL C 112 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU PRO C 113 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU ARG C 114 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY C 115 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU MET D 100 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU ARG D 101 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY D 102 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU SER D 103 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS D 104 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS D 105 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS D 106 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS D 107 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS D 108 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU HIS D 109 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY D 110 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU LEU D 111 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU VAL D 112 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU PRO D 113 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU ARG D 114 UNP Q9ZFF9 EXPRESSION TAG SEQADV 3RGU GLY D 115 UNP Q9ZFF9 EXPRESSION TAG SEQRES 1 A 132 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 A 132 PRO ARG GLY SER LYS GLY THR GLU GLU LYS GLN ASP SER SEQRES 3 A 132 VAL ARG GLU ASN LEU ASP LYS MET ILE SER GLU ALA GLU SEQRES 4 A 132 VAL LEU ASN ASP MET ALA ALA ARG LYS LEU ILE THR LEU SEQRES 5 A 132 ASP ALA GLU GLN GLN LEU GLU LEU MET LYS SER LEU VAL SEQRES 6 A 132 ALA THR GLN SER GLN LEU GLU ALA THR LYS ASN LEU ILE SEQRES 7 A 132 GLY ASP PRO ASN ALA THR VAL ALA ASP LEU GLN ILE ALA SEQRES 8 A 132 TYR THR THR LEU GLY ASN ASN THR GLN ALA LEU GLY ASN SEQRES 9 A 132 GLU LEU ILE LYS LEU ASN PRO ASN GLY GLN ILE TYR ALA SEQRES 10 A 132 VAL LEU ASN ASN THR GLU ALA SER ARG ALA ALA THR LEU SEQRES 11 A 132 ARG SER SEQRES 1 B 132 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 B 132 PRO ARG GLY SER LYS GLY THR GLU GLU LYS GLN ASP SER SEQRES 3 B 132 VAL ARG GLU ASN LEU ASP LYS MET ILE SER GLU ALA GLU SEQRES 4 B 132 VAL LEU ASN ASP MET ALA ALA ARG LYS LEU ILE THR LEU SEQRES 5 B 132 ASP ALA GLU GLN GLN LEU GLU LEU MET LYS SER LEU VAL SEQRES 6 B 132 ALA THR GLN SER GLN LEU GLU ALA THR LYS ASN LEU ILE SEQRES 7 B 132 GLY ASP PRO ASN ALA THR VAL ALA ASP LEU GLN ILE ALA SEQRES 8 B 132 TYR THR THR LEU GLY ASN ASN THR GLN ALA LEU GLY ASN SEQRES 9 B 132 GLU LEU ILE LYS LEU ASN PRO ASN GLY GLN ILE TYR ALA SEQRES 10 B 132 VAL LEU ASN ASN THR GLU ALA SER ARG ALA ALA THR LEU SEQRES 11 B 132 ARG SER SEQRES 1 C 132 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 C 132 PRO ARG GLY SER LYS GLY THR GLU GLU LYS GLN ASP SER SEQRES 3 C 132 VAL ARG GLU ASN LEU ASP LYS MET ILE SER GLU ALA GLU SEQRES 4 C 132 VAL LEU ASN ASP MET ALA ALA ARG LYS LEU ILE THR LEU SEQRES 5 C 132 ASP ALA GLU GLN GLN LEU GLU LEU MET LYS SER LEU VAL SEQRES 6 C 132 ALA THR GLN SER GLN LEU GLU ALA THR LYS ASN LEU ILE SEQRES 7 C 132 GLY ASP PRO ASN ALA THR VAL ALA ASP LEU GLN ILE ALA SEQRES 8 C 132 TYR THR THR LEU GLY ASN ASN THR GLN ALA LEU GLY ASN SEQRES 9 C 132 GLU LEU ILE LYS LEU ASN PRO ASN GLY GLN ILE TYR ALA SEQRES 10 C 132 VAL LEU ASN ASN THR GLU ALA SER ARG ALA ALA THR LEU SEQRES 11 C 132 ARG SER SEQRES 1 D 132 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 D 132 PRO ARG GLY SER LYS GLY THR GLU GLU LYS GLN ASP SER SEQRES 3 D 132 VAL ARG GLU ASN LEU ASP LYS MET ILE SER GLU ALA GLU SEQRES 4 D 132 VAL LEU ASN ASP MET ALA ALA ARG LYS LEU ILE THR LEU SEQRES 5 D 132 ASP ALA GLU GLN GLN LEU GLU LEU MET LYS SER LEU VAL SEQRES 6 D 132 ALA THR GLN SER GLN LEU GLU ALA THR LYS ASN LEU ILE SEQRES 7 D 132 GLY ASP PRO ASN ALA THR VAL ALA ASP LEU GLN ILE ALA SEQRES 8 D 132 TYR THR THR LEU GLY ASN ASN THR GLN ALA LEU GLY ASN SEQRES 9 D 132 GLU LEU ILE LYS LEU ASN PRO ASN GLY GLN ILE TYR ALA SEQRES 10 D 132 VAL LEU ASN ASN THR GLU ALA SER ARG ALA ALA THR LEU SEQRES 11 D 132 ARG SER HET GLC C 1 12 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 5 GLC C6 H12 O6 FORMUL 6 HOH *4(H2 O) HELIX 1 1 LEU A 130 THR A 150 1 21 HELIX 2 2 ASP A 152 ASP A 179 1 28 HELIX 3 3 THR A 183 ASN A 209 1 27 HELIX 4 4 ASN B 129 LEU B 148 1 20 HELIX 5 5 ILE B 149 LEU B 151 5 3 HELIX 6 6 ASP B 152 ASP B 179 1 28 HELIX 7 7 VAL B 184 LEU B 208 1 25 HELIX 8 8 ASN C 129 ILE C 149 1 21 HELIX 9 9 ASP C 152 ASP C 179 1 28 HELIX 10 10 THR C 183 ASN C 209 1 27 HELIX 11 11 VAL D 126 ASN D 129 5 4 HELIX 12 12 LEU D 130 THR D 150 1 21 HELIX 13 13 ASP D 152 ILE D 177 1 26 HELIX 14 14 THR D 183 ASN D 209 1 27 CRYST1 121.885 121.885 117.980 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008204 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008476 0.00000