HEADER OXIDOREDUCTASE 11-APR-11 3RHC TITLE CRYSTAL STRUCTURE OF THE HOLO FORM OF GLUTAREDOXIN C5 FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN-C5, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATGRXC5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: GRXC5, AT4G28730, F16A16.160; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THIOREDOXIN FOLD, THIOL-DISULFIDE OXIDOREDUCTASE, [2FE-2S] CLUSTER, KEYWDS 2 GLUTAREDOXIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.RORET,J.COUTURIER,P.TSAN,J.P.JACQUOT,N.ROUHIER,C.DIDIERJEAN REVDAT 5 21-FEB-24 3RHC 1 REMARK SEQADV LINK REVDAT 4 14-DEC-11 3RHC 1 HET HETATM HETNAM FORMUL REVDAT 4 2 1 REMARK REVDAT 3 17-AUG-11 3RHC 1 JRNL VERSN REVDAT 2 15-JUN-11 3RHC 1 JRNL REVDAT 1 01-JUN-11 3RHC 0 JRNL AUTH J.COUTURIER,E.STROHER,A.N.ALBETEL,T.RORET,M.MUTHURAMALINGAM, JRNL AUTH 2 L.TARRAGO,T.SEIDEL,P.TSAN,J.P.JACQUOT,M.K.JOHNSON,K.J.DIETZ, JRNL AUTH 3 C.DIDIERJEAN,N.ROUHIER JRNL TITL ARABIDOPSIS CHLOROPLASTIC GLUTAREDOXIN C5 AS A MODEL TO JRNL TITL 2 EXPLORE MOLECULAR DETERMINANTS FOR IRON-SULFUR CLUSTER JRNL TITL 3 BINDING INTO GLUTAREDOXINS. JRNL REF J.BIOL.CHEM. V. 286 27515 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21632542 JRNL DOI 10.1074/JBC.M111.228726 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 10043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 508 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 740 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1589 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.100 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1654 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2229 ; 2.190 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 201 ; 7.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;39.368 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;20.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.909 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1189 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1004 ; 1.230 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1639 ; 2.310 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 650 ; 3.406 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 588 ; 5.878 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8266 REMARK 200 MONOCHROMATOR : 111 SILICON SINGLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 27.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 70 % MPD, PH 7.5, REMARK 280 MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.87350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.25858 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.49200 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 55.87350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 32.25858 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.49200 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 55.87350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 32.25858 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.49200 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.51716 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.98400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 64.51716 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.98400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 64.51716 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.98400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 106 REMARK 465 ASN A 107 REMARK 465 GLY A 108 REMARK 465 LYS A 109 REMARK 465 ASN A 110 REMARK 465 GLY A 111 REMARK 465 GLN A 112 REMARK 465 SER A 113 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 PHE B 4 REMARK 465 GLY B 5 REMARK 465 ALA B 106 REMARK 465 ASN B 107 REMARK 465 GLY B 108 REMARK 465 LYS B 109 REMARK 465 ASN B 110 REMARK 465 GLY B 111 REMARK 465 GLN B 112 REMARK 465 SER B 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 18 CG GLU A 18 CD 0.092 REMARK 500 GLU A 34 CG GLU A 34 CD 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 29 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 LEU A 68 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 -2.03 -55.05 REMARK 500 THR B 69 -26.64 -141.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 115 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 FES A 115 S1 121.2 REMARK 620 3 FES A 115 S2 111.7 102.9 REMARK 620 4 GSH A 114 SG2 104.2 97.3 119.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 115 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 29 SG REMARK 620 2 FES A 115 S1 118.7 REMARK 620 3 FES A 115 S2 112.7 103.4 REMARK 620 4 GSH B 114 SG2 104.2 99.3 118.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 114 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FZ9 RELATED DB: PDB REMARK 900 RELATED ID: 3RHB RELATED DB: PDB DBREF 3RHC A 3 113 UNP Q8GWS0 GRXC5_ARATH 64 174 DBREF 3RHC B 3 113 UNP Q8GWS0 GRXC5_ARATH 64 174 SEQADV 3RHC MET A 1 UNP Q8GWS0 EXPRESSION TAG SEQADV 3RHC ALA A 2 UNP Q8GWS0 EXPRESSION TAG SEQADV 3RHC MET B 1 UNP Q8GWS0 EXPRESSION TAG SEQADV 3RHC ALA B 2 UNP Q8GWS0 EXPRESSION TAG SEQRES 1 A 113 MET ALA SER PHE GLY SER ARG MET GLU GLU SER ILE ARG SEQRES 2 A 113 LYS THR VAL THR GLU ASN THR VAL VAL ILE TYR SER LYS SEQRES 3 A 113 THR TRP CYS SER TYR CYS THR GLU VAL LYS THR LEU PHE SEQRES 4 A 113 LYS ARG LEU GLY VAL GLN PRO LEU VAL VAL GLU LEU ASP SEQRES 5 A 113 GLN LEU GLY PRO GLN GLY PRO GLN LEU GLN LYS VAL LEU SEQRES 6 A 113 GLU ARG LEU THR GLY GLN HIS THR VAL PRO ASN VAL PHE SEQRES 7 A 113 VAL CYS GLY LYS HIS ILE GLY GLY CYS THR ASP THR VAL SEQRES 8 A 113 LYS LEU ASN ARG LYS GLY ASP LEU GLU LEU MET LEU ALA SEQRES 9 A 113 GLU ALA ASN GLY LYS ASN GLY GLN SER SEQRES 1 B 113 MET ALA SER PHE GLY SER ARG MET GLU GLU SER ILE ARG SEQRES 2 B 113 LYS THR VAL THR GLU ASN THR VAL VAL ILE TYR SER LYS SEQRES 3 B 113 THR TRP CYS SER TYR CYS THR GLU VAL LYS THR LEU PHE SEQRES 4 B 113 LYS ARG LEU GLY VAL GLN PRO LEU VAL VAL GLU LEU ASP SEQRES 5 B 113 GLN LEU GLY PRO GLN GLY PRO GLN LEU GLN LYS VAL LEU SEQRES 6 B 113 GLU ARG LEU THR GLY GLN HIS THR VAL PRO ASN VAL PHE SEQRES 7 B 113 VAL CYS GLY LYS HIS ILE GLY GLY CYS THR ASP THR VAL SEQRES 8 B 113 LYS LEU ASN ARG LYS GLY ASP LEU GLU LEU MET LEU ALA SEQRES 9 B 113 GLU ALA ASN GLY LYS ASN GLY GLN SER HET GSH A 114 20 HET FES A 115 4 HET GSH B 114 20 HETNAM GSH GLUTATHIONE HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 3 GSH 2(C10 H17 N3 O6 S) FORMUL 4 FES FE2 S2 FORMUL 6 HOH *29(H2 O) HELIX 1 1 SER A 3 ASN A 19 1 17 HELIX 2 2 CYS A 29 ARG A 41 1 13 HELIX 3 3 ASP A 52 GLY A 55 5 4 HELIX 4 4 PRO A 56 GLY A 70 1 15 HELIX 5 5 GLY A 86 LYS A 96 1 11 HELIX 6 6 GLY A 97 LEU A 103 1 7 HELIX 7 7 SER B 6 ASN B 19 1 14 HELIX 8 8 CYS B 29 LEU B 42 1 14 HELIX 9 9 ASP B 52 GLY B 55 5 4 HELIX 10 10 PRO B 56 LEU B 68 1 13 HELIX 11 11 GLY B 86 GLY B 97 1 12 HELIX 12 12 LEU B 99 ALA B 104 1 6 SHEET 1 A 4 LEU A 47 GLU A 50 0 SHEET 2 A 4 VAL A 21 SER A 25 1 N VAL A 21 O LEU A 47 SHEET 3 A 4 ASN A 76 VAL A 79 -1 O ASN A 76 N TYR A 24 SHEET 4 A 4 LYS A 82 HIS A 83 -1 O LYS A 82 N VAL A 79 SHEET 1 B 4 LEU B 47 GLU B 50 0 SHEET 2 B 4 VAL B 21 SER B 25 1 N SER B 25 O VAL B 49 SHEET 3 B 4 ASN B 76 VAL B 79 -1 O ASN B 76 N TYR B 24 SHEET 4 B 4 LYS B 82 GLY B 85 -1 O GLY B 85 N VAL B 77 LINK SG CYS A 29 FE1 FES A 115 1555 1555 2.40 LINK SG2 GSH A 114 FE1 FES A 115 1555 1555 2.29 LINK FE2 FES A 115 SG CYS B 29 1555 1555 2.30 LINK FE2 FES A 115 SG2 GSH B 114 1555 1555 2.31 CISPEP 1 VAL A 74 PRO A 75 0 -1.59 CISPEP 2 ILE A 84 GLY A 85 0 -28.98 CISPEP 3 ALA A 104 GLU A 105 0 -14.90 CISPEP 4 VAL B 74 PRO B 75 0 0.60 SITE 1 AC1 13 LYS A 26 CYS A 29 GLN A 62 THR A 73 SITE 2 AC1 13 VAL A 74 GLY A 86 CYS A 87 THR A 88 SITE 3 AC1 13 FES A 115 HOH A 116 HOH A 118 TRP B 28 SITE 4 AC1 13 SER B 30 SITE 1 AC2 6 CYS A 29 TYR A 31 GSH A 114 CYS B 29 SITE 2 AC2 6 TYR B 31 GSH B 114 SITE 1 AC3 15 TRP A 28 SER A 30 FES A 115 LYS B 26 SITE 2 AC3 15 CYS B 29 TYR B 31 GLN B 62 THR B 73 SITE 3 AC3 15 VAL B 74 PRO B 75 GLY B 86 CYS B 87 SITE 4 AC3 15 THR B 88 ASP B 89 HOH B 171 CRYST1 111.747 111.747 58.476 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008949 0.005167 0.000000 0.00000 SCALE2 0.000000 0.010333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017101 0.00000