data_3RI2 # _entry.id 3RI2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3RI2 RCSB RCSB064956 WWPDB D_1000064956 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2012-04-25 _pdbx_database_PDB_obs_spr.pdb_id 4EJO _pdbx_database_PDB_obs_spr.replace_pdb_id 3RI2 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC100099 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3RI2 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-04-12 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Li, H.' 2 'Bearden, J.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of PadR family transcriptional regulator from Eggerthella lenta DSM 2243' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Li, H.' 2 primary 'Bearden, J.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 55.783 _cell.length_b 55.783 _cell.length_c 132.425 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3RI2 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 41' _symmetry.entry_id 3RI2 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 80 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, PadR-like family' 14110.361 2 ? ? ? ? 2 water nat water 18.015 117 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)AYDDIVSS(MSE)VLELRRGTLV(MSE)LVLSQLREPAYGYALVKSLADHGIPIEANTLYPL(MSE)RRLES QGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQWHVLCDGVGKLLETNGEDREHAER ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMAYDDIVSSMVLELRRGTLVMLVLSQLREPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPR KYYRTTDEGLRVLREVEAQWHVLCDGVGKLLETNGEDREHAER ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC100099 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 TYR n 1 7 ASP n 1 8 ASP n 1 9 ILE n 1 10 VAL n 1 11 SER n 1 12 SER n 1 13 MSE n 1 14 VAL n 1 15 LEU n 1 16 GLU n 1 17 LEU n 1 18 ARG n 1 19 ARG n 1 20 GLY n 1 21 THR n 1 22 LEU n 1 23 VAL n 1 24 MSE n 1 25 LEU n 1 26 VAL n 1 27 LEU n 1 28 SER n 1 29 GLN n 1 30 LEU n 1 31 ARG n 1 32 GLU n 1 33 PRO n 1 34 ALA n 1 35 TYR n 1 36 GLY n 1 37 TYR n 1 38 ALA n 1 39 LEU n 1 40 VAL n 1 41 LYS n 1 42 SER n 1 43 LEU n 1 44 ALA n 1 45 ASP n 1 46 HIS n 1 47 GLY n 1 48 ILE n 1 49 PRO n 1 50 ILE n 1 51 GLU n 1 52 ALA n 1 53 ASN n 1 54 THR n 1 55 LEU n 1 56 TYR n 1 57 PRO n 1 58 LEU n 1 59 MSE n 1 60 ARG n 1 61 ARG n 1 62 LEU n 1 63 GLU n 1 64 SER n 1 65 GLN n 1 66 GLY n 1 67 LEU n 1 68 LEU n 1 69 ALA n 1 70 SER n 1 71 GLU n 1 72 TRP n 1 73 ASP n 1 74 ASN n 1 75 GLY n 1 76 GLY n 1 77 SER n 1 78 LYS n 1 79 PRO n 1 80 ARG n 1 81 LYS n 1 82 TYR n 1 83 TYR n 1 84 ARG n 1 85 THR n 1 86 THR n 1 87 ASP n 1 88 GLU n 1 89 GLY n 1 90 LEU n 1 91 ARG n 1 92 VAL n 1 93 LEU n 1 94 ARG n 1 95 GLU n 1 96 VAL n 1 97 GLU n 1 98 ALA n 1 99 GLN n 1 100 TRP n 1 101 HIS n 1 102 VAL n 1 103 LEU n 1 104 CYS n 1 105 ASP n 1 106 GLY n 1 107 VAL n 1 108 GLY n 1 109 LYS n 1 110 LEU n 1 111 LEU n 1 112 GLU n 1 113 THR n 1 114 ASN n 1 115 GLY n 1 116 GLU n 1 117 ASP n 1 118 ARG n 1 119 GLU n 1 120 HIS n 1 121 ALA n 1 122 GLU n 1 123 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Elen_1533 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Eggerthella lenta' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 479437 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pMCSG7 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C8WHB0_EGGLE _struct_ref.pdbx_db_accession C8WHB0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAYDDIVSSMVLELRRGTLVMLVLSQLREPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYY RTTDEGLRVLREVEAQWHVLCDGVGKLLETNGEDREHAER ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3RI2 A 4 ? 123 ? C8WHB0 1 ? 120 ? 1 120 2 1 3RI2 B 4 ? 123 ? C8WHB0 1 ? 120 ? 1 120 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RI2 SER A 1 ? UNP C8WHB0 ? ? 'EXPRESSION TAG' -2 1 1 3RI2 ASN A 2 ? UNP C8WHB0 ? ? 'EXPRESSION TAG' -1 2 1 3RI2 ALA A 3 ? UNP C8WHB0 ? ? 'EXPRESSION TAG' 0 3 2 3RI2 SER B 1 ? UNP C8WHB0 ? ? 'EXPRESSION TAG' -2 4 2 3RI2 ASN B 2 ? UNP C8WHB0 ? ? 'EXPRESSION TAG' -1 5 2 3RI2 ALA B 3 ? UNP C8WHB0 ? ? 'EXPRESSION TAG' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3RI2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.83 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 32.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Phosphate-citrate pH 4.2, 40% Ethanol, 5% PEG 1000, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-10-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'Si(111)double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97948 1.0 2 0.97959 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97948, 0.97959' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3RI2 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 50 _reflns.number_all 11881 _reflns.number_obs 11880 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.126 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.12 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.542 _reflns_shell.meanI_over_sigI_obs 4.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 8.6 _reflns_shell.number_unique_all 312 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3RI2 _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8100 _refine.ls_number_reflns_obs 11852 _refine.ls_number_reflns_all 11852 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all 0.1827 _refine.ls_R_factor_obs 0.1827 _refine.ls_R_factor_R_work 0.1802 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2352 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_number_reflns_R_free 550 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 37.1478 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 6.2400 _refine.aniso_B[2][2] 6.2400 _refine.aniso_B[3][3] -12.4700 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9500 _refine.correlation_coeff_Fo_to_Fc_free 0.9220 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.0440 _refine.overall_SU_ML 0.1630 _refine.overall_SU_B 13.6550 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 114.390 _refine.B_iso_min 18.920 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.059 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1740 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 1857 _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1823 0.015 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2468 1.641 1.989 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 227 6.746 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 81 34.411 22.469 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 334 18.666 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 21 19.709 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 278 0.106 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1361 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1121 0.582 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1798 1.055 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 702 1.969 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 670 3.000 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.0960 _refine_ls_shell.d_res_low 2.1510 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.7800 _refine_ls_shell.number_reflns_R_work 845 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1800 _refine_ls_shell.R_factor_R_free 0.2310 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 891 _refine_ls_shell.number_reflns_obs 891 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3RI2 _struct.title 'Crystal structure of PadR family transcriptional regulator from Eggerthella lenta DSM 2243' _struct.pdbx_descriptor 'Transcriptional regulator, PadR-like family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RI2 _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text 'PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, transcriptional regulator, PadR, TRANSCRIPTION REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details dimer # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 4 ? LEU A 30 ? MSE A 1 LEU A 27 1 ? 27 HELX_P HELX_P2 2 GLY A 36 ? HIS A 46 ? GLY A 33 HIS A 43 1 ? 11 HELX_P HELX_P3 3 GLU A 51 ? GLN A 65 ? GLU A 48 GLN A 62 1 ? 15 HELX_P HELX_P4 4 THR A 86 ? GLU A 112 ? THR A 83 GLU A 109 1 ? 27 HELX_P HELX_P5 5 MSE B 4 ? GLY B 20 ? MSE B 1 GLY B 17 1 ? 17 HELX_P HELX_P6 6 THR B 21 ? LEU B 30 ? THR B 18 LEU B 27 1 ? 10 HELX_P HELX_P7 7 GLY B 36 ? HIS B 46 ? GLY B 33 HIS B 43 1 ? 11 HELX_P HELX_P8 8 THR B 54 ? GLN B 65 ? THR B 51 GLN B 62 1 ? 12 HELX_P HELX_P9 9 THR B 86 ? GLU B 112 ? THR B 83 GLU B 109 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A ALA 5 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A SER 12 C ? ? ? 1_555 A MSE 13 N ? ? A SER 9 A MSE 10 1_555 ? ? ? ? ? ? ? 1.348 ? covale4 covale ? ? A MSE 13 C ? ? ? 1_555 A VAL 14 N ? ? A MSE 10 A VAL 11 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A VAL 23 C ? ? ? 1_555 A MSE 24 N ? ? A VAL 20 A MSE 21 1_555 ? ? ? ? ? ? ? 1.346 ? covale6 covale ? ? A MSE 24 C ? ? ? 1_555 A LEU 25 N ? ? A MSE 21 A LEU 22 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A LEU 58 C ? ? ? 1_555 A MSE 59 N ? ? A LEU 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.324 ? covale8 covale ? ? A MSE 59 C ? ? ? 1_555 A ARG 60 N ? ? A MSE 56 A ARG 57 1_555 ? ? ? ? ? ? ? 1.337 ? covale9 covale ? ? B ALA 3 C ? ? ? 1_555 B MSE 4 N ? ? B ALA 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.334 ? covale10 covale ? ? B MSE 4 C ? ? ? 1_555 B ALA 5 N ? ? B MSE 1 B ALA 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale11 covale ? ? B SER 12 C ? ? ? 1_555 B MSE 13 N ? ? B SER 9 B MSE 10 1_555 ? ? ? ? ? ? ? 1.326 ? covale12 covale ? ? B MSE 13 C ? ? ? 1_555 B VAL 14 N ? ? B MSE 10 B VAL 11 1_555 ? ? ? ? ? ? ? 1.332 ? covale13 covale ? ? B VAL 23 C ? ? ? 1_555 B MSE 24 N ? ? B VAL 20 B MSE 21 1_555 ? ? ? ? ? ? ? 1.338 ? covale14 covale ? ? B MSE 24 C ? ? ? 1_555 B LEU 25 N ? ? B MSE 21 B LEU 22 1_555 ? ? ? ? ? ? ? 1.331 ? covale15 covale ? ? B LEU 58 C ? ? ? 1_555 B MSE 59 N ? ? B LEU 55 B MSE 56 1_555 ? ? ? ? ? ? ? 1.332 ? covale16 covale ? ? B MSE 59 C ? ? ? 1_555 B ARG 60 N ? ? B MSE 56 B ARG 57 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 113 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 110 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASN _struct_mon_prot_cis.pdbx_label_seq_id_2 114 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASN _struct_mon_prot_cis.pdbx_auth_seq_id_2 111 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 10.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 34 ? TYR A 35 ? ALA A 31 TYR A 32 A 2 PRO A 79 ? THR A 85 ? PRO A 76 THR A 82 A 3 LEU A 68 ? ASN A 74 ? LEU A 65 ASN A 71 B 1 ALA B 34 ? TYR B 35 ? ALA B 31 TYR B 32 B 2 ARG B 80 ? THR B 85 ? ARG B 77 THR B 82 B 3 LEU B 68 ? ASP B 73 ? LEU B 65 ASP B 70 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 34 ? N ALA A 31 O TYR A 83 ? O TYR A 80 A 2 3 O TYR A 82 ? O TYR A 79 N GLU A 71 ? N GLU A 68 B 1 2 N ALA B 34 ? N ALA B 31 O TYR B 83 ? O TYR B 80 B 2 3 O ARG B 80 ? O ARG B 77 N ASP B 73 ? N ASP B 70 # _atom_sites.entry_id 3RI2 _atom_sites.fract_transf_matrix[1][1] 0.017927 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017927 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007551 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 TYR 6 3 3 TYR ALA A . n A 1 7 ASP 7 4 4 ASP ASP A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 ILE 9 6 6 ILE ILE A . n A 1 10 VAL 10 7 7 VAL VAL A . n A 1 11 SER 11 8 8 SER SER A . n A 1 12 SER 12 9 9 SER SER A . n A 1 13 MSE 13 10 10 MSE MSE A . n A 1 14 VAL 14 11 11 VAL VAL A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 GLU 16 13 13 GLU GLU A . n A 1 17 LEU 17 14 14 LEU LEU A . n A 1 18 ARG 18 15 15 ARG ARG A . n A 1 19 ARG 19 16 16 ARG ARG A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 THR 21 18 18 THR THR A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 VAL 23 20 20 VAL VAL A . n A 1 24 MSE 24 21 21 MSE MSE A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 VAL 26 23 23 VAL VAL A . n A 1 27 LEU 27 24 24 LEU LEU A . n A 1 28 SER 28 25 25 SER SER A . n A 1 29 GLN 29 26 26 GLN GLN A . n A 1 30 LEU 30 27 27 LEU LEU A . n A 1 31 ARG 31 28 28 ARG ARG A . n A 1 32 GLU 32 29 29 GLU GLU A . n A 1 33 PRO 33 30 30 PRO PRO A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 TYR 35 32 32 TYR TYR A . n A 1 36 GLY 36 33 33 GLY GLY A . n A 1 37 TYR 37 34 34 TYR TYR A . n A 1 38 ALA 38 35 35 ALA ALA A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 VAL 40 37 37 VAL VAL A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 SER 42 39 39 SER SER A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 ASP 45 42 42 ASP ASP A . n A 1 46 HIS 46 43 43 HIS HIS A . n A 1 47 GLY 47 44 44 GLY GLY A . n A 1 48 ILE 48 45 45 ILE ILE A . n A 1 49 PRO 49 46 46 PRO PRO A . n A 1 50 ILE 50 47 47 ILE ILE A . n A 1 51 GLU 51 48 48 GLU GLU A . n A 1 52 ALA 52 49 49 ALA ALA A . n A 1 53 ASN 53 50 50 ASN ASN A . n A 1 54 THR 54 51 51 THR THR A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 TYR 56 53 53 TYR TYR A . n A 1 57 PRO 57 54 54 PRO PRO A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 MSE 59 56 56 MSE MSE A . n A 1 60 ARG 60 57 57 ARG ARG A . n A 1 61 ARG 61 58 58 ARG ARG A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 GLU 63 60 60 GLU GLU A . n A 1 64 SER 64 61 61 SER SER A . n A 1 65 GLN 65 62 62 GLN GLN A . n A 1 66 GLY 66 63 63 GLY GLY A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 LEU 68 65 65 LEU LEU A . n A 1 69 ALA 69 66 66 ALA ALA A . n A 1 70 SER 70 67 67 SER SER A . n A 1 71 GLU 71 68 68 GLU GLU A . n A 1 72 TRP 72 69 69 TRP TRP A . n A 1 73 ASP 73 70 70 ASP ASP A . n A 1 74 ASN 74 71 71 ASN ASN A . n A 1 75 GLY 75 72 72 GLY GLY A . n A 1 76 GLY 76 73 73 GLY GLY A . n A 1 77 SER 77 74 74 SER SER A . n A 1 78 LYS 78 75 75 LYS LYS A . n A 1 79 PRO 79 76 76 PRO PRO A . n A 1 80 ARG 80 77 77 ARG ARG A . n A 1 81 LYS 81 78 78 LYS LYS A . n A 1 82 TYR 82 79 79 TYR TYR A . n A 1 83 TYR 83 80 80 TYR TYR A . n A 1 84 ARG 84 81 81 ARG ARG A . n A 1 85 THR 85 82 82 THR THR A . n A 1 86 THR 86 83 83 THR THR A . n A 1 87 ASP 87 84 84 ASP ASP A . n A 1 88 GLU 88 85 85 GLU GLU A . n A 1 89 GLY 89 86 86 GLY GLY A . n A 1 90 LEU 90 87 87 LEU LEU A . n A 1 91 ARG 91 88 88 ARG ARG A . n A 1 92 VAL 92 89 89 VAL VAL A . n A 1 93 LEU 93 90 90 LEU LEU A . n A 1 94 ARG 94 91 91 ARG ARG A . n A 1 95 GLU 95 92 92 GLU GLU A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 ALA 98 95 95 ALA ALA A . n A 1 99 GLN 99 96 96 GLN GLN A . n A 1 100 TRP 100 97 97 TRP TRP A . n A 1 101 HIS 101 98 98 HIS HIS A . n A 1 102 VAL 102 99 99 VAL VAL A . n A 1 103 LEU 103 100 100 LEU LEU A . n A 1 104 CYS 104 101 101 CYS CYS A . n A 1 105 ASP 105 102 102 ASP ASP A . n A 1 106 GLY 106 103 103 GLY GLY A . n A 1 107 VAL 107 104 104 VAL VAL A . n A 1 108 GLY 108 105 105 GLY GLY A . n A 1 109 LYS 109 106 106 LYS LYS A . n A 1 110 LEU 110 107 107 LEU LEU A . n A 1 111 LEU 111 108 108 LEU LEU A . n A 1 112 GLU 112 109 109 GLU GLU A . n A 1 113 THR 113 110 110 THR THR A . n A 1 114 ASN 114 111 111 ASN ASN A . n A 1 115 GLY 115 112 ? ? ? A . n A 1 116 GLU 116 113 ? ? ? A . n A 1 117 ASP 117 114 ? ? ? A . n A 1 118 ARG 118 115 ? ? ? A . n A 1 119 GLU 119 116 ? ? ? A . n A 1 120 HIS 120 117 ? ? ? A . n A 1 121 ALA 121 118 ? ? ? A . n A 1 122 GLU 122 119 ? ? ? A . n A 1 123 ARG 123 120 ? ? ? A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 0 ALA ALA B . n B 1 4 MSE 4 1 1 MSE MSE B . n B 1 5 ALA 5 2 2 ALA ALA B . n B 1 6 TYR 6 3 3 TYR TYR B . n B 1 7 ASP 7 4 4 ASP ASP B . n B 1 8 ASP 8 5 5 ASP ASP B . n B 1 9 ILE 9 6 6 ILE ILE B . n B 1 10 VAL 10 7 7 VAL VAL B . n B 1 11 SER 11 8 8 SER SER B . n B 1 12 SER 12 9 9 SER SER B . n B 1 13 MSE 13 10 10 MSE MSE B . n B 1 14 VAL 14 11 11 VAL VAL B . n B 1 15 LEU 15 12 12 LEU LEU B . n B 1 16 GLU 16 13 13 GLU GLU B . n B 1 17 LEU 17 14 14 LEU LEU B . n B 1 18 ARG 18 15 15 ARG ARG B . n B 1 19 ARG 19 16 16 ARG ARG B . n B 1 20 GLY 20 17 17 GLY GLY B . n B 1 21 THR 21 18 18 THR THR B . n B 1 22 LEU 22 19 19 LEU LEU B . n B 1 23 VAL 23 20 20 VAL VAL B . n B 1 24 MSE 24 21 21 MSE MSE B . n B 1 25 LEU 25 22 22 LEU LEU B . n B 1 26 VAL 26 23 23 VAL VAL B . n B 1 27 LEU 27 24 24 LEU LEU B . n B 1 28 SER 28 25 25 SER SER B . n B 1 29 GLN 29 26 26 GLN GLN B . n B 1 30 LEU 30 27 27 LEU LEU B . n B 1 31 ARG 31 28 28 ARG ARG B . n B 1 32 GLU 32 29 29 GLU GLU B . n B 1 33 PRO 33 30 30 PRO PRO B . n B 1 34 ALA 34 31 31 ALA ALA B . n B 1 35 TYR 35 32 32 TYR TYR B . n B 1 36 GLY 36 33 33 GLY GLY B . n B 1 37 TYR 37 34 34 TYR TYR B . n B 1 38 ALA 38 35 35 ALA ALA B . n B 1 39 LEU 39 36 36 LEU LEU B . n B 1 40 VAL 40 37 37 VAL VAL B . n B 1 41 LYS 41 38 38 LYS LYS B . n B 1 42 SER 42 39 39 SER SER B . n B 1 43 LEU 43 40 40 LEU LEU B . n B 1 44 ALA 44 41 41 ALA ALA B . n B 1 45 ASP 45 42 42 ASP ASP B . n B 1 46 HIS 46 43 43 HIS HIS B . n B 1 47 GLY 47 44 44 GLY GLY B . n B 1 48 ILE 48 45 45 ILE ILE B . n B 1 49 PRO 49 46 46 PRO PRO B . n B 1 50 ILE 50 47 47 ILE ILE B . n B 1 51 GLU 51 48 ? ? ? B . n B 1 52 ALA 52 49 ? ? ? B . n B 1 53 ASN 53 50 50 ASN ASN B . n B 1 54 THR 54 51 51 THR THR B . n B 1 55 LEU 55 52 52 LEU LEU B . n B 1 56 TYR 56 53 53 TYR TYR B . n B 1 57 PRO 57 54 54 PRO PRO B . n B 1 58 LEU 58 55 55 LEU LEU B . n B 1 59 MSE 59 56 56 MSE MSE B . n B 1 60 ARG 60 57 57 ARG ARG B . n B 1 61 ARG 61 58 58 ARG ARG B . n B 1 62 LEU 62 59 59 LEU LEU B . n B 1 63 GLU 63 60 60 GLU GLU B . n B 1 64 SER 64 61 61 SER SER B . n B 1 65 GLN 65 62 62 GLN GLN B . n B 1 66 GLY 66 63 63 GLY GLY B . n B 1 67 LEU 67 64 64 LEU LEU B . n B 1 68 LEU 68 65 65 LEU LEU B . n B 1 69 ALA 69 66 66 ALA ALA B . n B 1 70 SER 70 67 67 SER SER B . n B 1 71 GLU 71 68 68 GLU GLU B . n B 1 72 TRP 72 69 69 TRP TRP B . n B 1 73 ASP 73 70 70 ASP ASP B . n B 1 74 ASN 74 71 71 ASN ASN B . n B 1 75 GLY 75 72 72 GLY GLY B . n B 1 76 GLY 76 73 73 GLY GLY B . n B 1 77 SER 77 74 ? ? ? B . n B 1 78 LYS 78 75 75 LYS LYS B . n B 1 79 PRO 79 76 76 PRO PRO B . n B 1 80 ARG 80 77 77 ARG ARG B . n B 1 81 LYS 81 78 78 LYS LYS B . n B 1 82 TYR 82 79 79 TYR TYR B . n B 1 83 TYR 83 80 80 TYR TYR B . n B 1 84 ARG 84 81 81 ARG ARG B . n B 1 85 THR 85 82 82 THR THR B . n B 1 86 THR 86 83 83 THR THR B . n B 1 87 ASP 87 84 84 ASP ASP B . n B 1 88 GLU 88 85 85 GLU GLU B . n B 1 89 GLY 89 86 86 GLY GLY B . n B 1 90 LEU 90 87 87 LEU LEU B . n B 1 91 ARG 91 88 88 ARG ARG B . n B 1 92 VAL 92 89 89 VAL VAL B . n B 1 93 LEU 93 90 90 LEU LEU B . n B 1 94 ARG 94 91 91 ARG ARG B . n B 1 95 GLU 95 92 92 GLU GLU B . n B 1 96 VAL 96 93 93 VAL VAL B . n B 1 97 GLU 97 94 94 GLU GLU B . n B 1 98 ALA 98 95 95 ALA ALA B . n B 1 99 GLN 99 96 96 GLN GLN B . n B 1 100 TRP 100 97 97 TRP TRP B . n B 1 101 HIS 101 98 98 HIS HIS B . n B 1 102 VAL 102 99 99 VAL VAL B . n B 1 103 LEU 103 100 100 LEU LEU B . n B 1 104 CYS 104 101 101 CYS CYS B . n B 1 105 ASP 105 102 102 ASP ASP B . n B 1 106 GLY 106 103 103 GLY GLY B . n B 1 107 VAL 107 104 104 VAL VAL B . n B 1 108 GLY 108 105 105 GLY GLY B . n B 1 109 LYS 109 106 106 LYS LYS B . n B 1 110 LEU 110 107 107 LEU LEU B . n B 1 111 LEU 111 108 108 LEU LEU B . n B 1 112 GLU 112 109 109 GLU GLU B . n B 1 113 THR 113 110 110 THR THR B . n B 1 114 ASN 114 111 111 ASN ASN B . n B 1 115 GLY 115 112 ? ? ? B . n B 1 116 GLU 116 113 ? ? ? B . n B 1 117 ASP 117 114 ? ? ? B . n B 1 118 ARG 118 115 ? ? ? B . n B 1 119 GLU 119 116 ? ? ? B . n B 1 120 HIS 120 117 ? ? ? B . n B 1 121 ALA 121 118 ? ? ? B . n B 1 122 GLU 122 119 ? ? ? B . n B 1 123 ARG 123 120 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 121 1 HOH HOH A . C 2 HOH 2 122 2 HOH HOH A . C 2 HOH 3 123 6 HOH HOH A . C 2 HOH 4 124 8 HOH HOH A . C 2 HOH 5 125 9 HOH HOH A . C 2 HOH 6 126 10 HOH HOH A . C 2 HOH 7 127 12 HOH HOH A . C 2 HOH 8 128 15 HOH HOH A . C 2 HOH 9 129 20 HOH HOH A . C 2 HOH 10 130 21 HOH HOH A . C 2 HOH 11 131 22 HOH HOH A . C 2 HOH 12 132 26 HOH HOH A . C 2 HOH 13 133 31 HOH HOH A . C 2 HOH 14 134 35 HOH HOH A . C 2 HOH 15 135 36 HOH HOH A . C 2 HOH 16 136 37 HOH HOH A . C 2 HOH 17 137 39 HOH HOH A . C 2 HOH 18 138 40 HOH HOH A . C 2 HOH 19 139 41 HOH HOH A . C 2 HOH 20 140 42 HOH HOH A . C 2 HOH 21 141 43 HOH HOH A . C 2 HOH 22 142 44 HOH HOH A . C 2 HOH 23 143 47 HOH HOH A . C 2 HOH 24 144 50 HOH HOH A . C 2 HOH 25 145 52 HOH HOH A . C 2 HOH 26 146 54 HOH HOH A . C 2 HOH 27 147 55 HOH HOH A . C 2 HOH 28 148 56 HOH HOH A . C 2 HOH 29 149 59 HOH HOH A . C 2 HOH 30 150 61 HOH HOH A . C 2 HOH 31 151 62 HOH HOH A . C 2 HOH 32 152 63 HOH HOH A . C 2 HOH 33 153 64 HOH HOH A . C 2 HOH 34 154 65 HOH HOH A . C 2 HOH 35 155 66 HOH HOH A . C 2 HOH 36 156 71 HOH HOH A . C 2 HOH 37 157 75 HOH HOH A . C 2 HOH 38 158 76 HOH HOH A . C 2 HOH 39 159 77 HOH HOH A . C 2 HOH 40 160 78 HOH HOH A . C 2 HOH 41 161 81 HOH HOH A . C 2 HOH 42 162 82 HOH HOH A . C 2 HOH 43 163 83 HOH HOH A . C 2 HOH 44 164 85 HOH HOH A . C 2 HOH 45 165 87 HOH HOH A . C 2 HOH 46 166 88 HOH HOH A . C 2 HOH 47 167 89 HOH HOH A . C 2 HOH 48 168 94 HOH HOH A . C 2 HOH 49 169 95 HOH HOH A . C 2 HOH 50 170 97 HOH HOH A . C 2 HOH 51 171 98 HOH HOH A . C 2 HOH 52 172 102 HOH HOH A . C 2 HOH 53 173 103 HOH HOH A . C 2 HOH 54 174 104 HOH HOH A . C 2 HOH 55 175 105 HOH HOH A . C 2 HOH 56 176 106 HOH HOH A . C 2 HOH 57 177 108 HOH HOH A . C 2 HOH 58 178 109 HOH HOH A . C 2 HOH 59 179 110 HOH HOH A . C 2 HOH 60 180 111 HOH HOH A . C 2 HOH 61 181 112 HOH HOH A . C 2 HOH 62 182 114 HOH HOH A . C 2 HOH 63 183 116 HOH HOH A . C 2 HOH 64 184 117 HOH HOH A . D 2 HOH 1 121 3 HOH HOH B . D 2 HOH 2 122 4 HOH HOH B . D 2 HOH 3 123 5 HOH HOH B . D 2 HOH 4 124 7 HOH HOH B . D 2 HOH 5 125 11 HOH HOH B . D 2 HOH 6 126 13 HOH HOH B . D 2 HOH 7 127 14 HOH HOH B . D 2 HOH 8 128 16 HOH HOH B . D 2 HOH 9 129 17 HOH HOH B . D 2 HOH 10 130 18 HOH HOH B . D 2 HOH 11 131 19 HOH HOH B . D 2 HOH 12 132 23 HOH HOH B . D 2 HOH 13 133 24 HOH HOH B . D 2 HOH 14 134 25 HOH HOH B . D 2 HOH 15 135 27 HOH HOH B . D 2 HOH 16 136 28 HOH HOH B . D 2 HOH 17 137 29 HOH HOH B . D 2 HOH 18 138 30 HOH HOH B . D 2 HOH 19 139 32 HOH HOH B . D 2 HOH 20 140 33 HOH HOH B . D 2 HOH 21 141 34 HOH HOH B . D 2 HOH 22 142 38 HOH HOH B . D 2 HOH 23 143 45 HOH HOH B . D 2 HOH 24 144 46 HOH HOH B . D 2 HOH 25 145 48 HOH HOH B . D 2 HOH 26 146 49 HOH HOH B . D 2 HOH 27 147 51 HOH HOH B . D 2 HOH 28 148 53 HOH HOH B . D 2 HOH 29 149 57 HOH HOH B . D 2 HOH 30 150 58 HOH HOH B . D 2 HOH 31 151 60 HOH HOH B . D 2 HOH 32 152 67 HOH HOH B . D 2 HOH 33 153 68 HOH HOH B . D 2 HOH 34 154 69 HOH HOH B . D 2 HOH 35 155 70 HOH HOH B . D 2 HOH 36 156 72 HOH HOH B . D 2 HOH 37 157 73 HOH HOH B . D 2 HOH 38 158 74 HOH HOH B . D 2 HOH 39 159 79 HOH HOH B . D 2 HOH 40 160 80 HOH HOH B . D 2 HOH 41 161 84 HOH HOH B . D 2 HOH 42 162 86 HOH HOH B . D 2 HOH 43 163 90 HOH HOH B . D 2 HOH 44 164 91 HOH HOH B . D 2 HOH 45 165 92 HOH HOH B . D 2 HOH 46 166 93 HOH HOH B . D 2 HOH 47 167 96 HOH HOH B . D 2 HOH 48 168 99 HOH HOH B . D 2 HOH 49 169 100 HOH HOH B . D 2 HOH 50 170 101 HOH HOH B . D 2 HOH 51 171 107 HOH HOH B . D 2 HOH 52 172 113 HOH HOH B . D 2 HOH 53 173 115 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 13 A MSE 10 ? MET SELENOMETHIONINE 3 A MSE 24 A MSE 21 ? MET SELENOMETHIONINE 4 A MSE 59 A MSE 56 ? MET SELENOMETHIONINE 5 B MSE 4 B MSE 1 ? MET SELENOMETHIONINE 6 B MSE 13 B MSE 10 ? MET SELENOMETHIONINE 7 B MSE 24 B MSE 21 ? MET SELENOMETHIONINE 8 B MSE 59 B MSE 56 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C 2 1,3 B,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3380 ? 1 MORE -40 ? 1 'SSA (A^2)' 12900 ? 2 'ABSA (A^2)' 3930 ? 2 MORE -43 ? 2 'SSA (A^2)' 12460 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 55.7830000000 0.0000000000 -1.0000000000 0.0000000000 55.7830000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 6_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-04-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 19.7260 14.9470 9.9010 0.2290 0.3747 0.4731 0.0488 0.0363 0.0567 0.2672 20.8756 14.2442 -0.4509 -1.6422 -10.7106 -0.0961 0.5973 -0.5012 0.1181 0.0275 1.1242 0.1760 0.4746 -0.6638 'X-RAY DIFFRACTION' 2 ? refined 21.5170 35.6110 5.7370 0.2276 0.2172 0.3452 -0.0061 -0.0162 -0.0203 2.8424 11.8026 1.9177 -4.4477 -0.3626 1.3383 -0.1587 0.1326 0.0262 -0.1639 -0.1836 0.2058 0.0436 0.4322 -0.0839 'X-RAY DIFFRACTION' 3 ? refined 10.3370 46.0310 7.7170 0.1889 0.2379 0.3797 0.0816 0.0382 0.0128 15.2188 4.9866 3.9810 -3.6187 5.8600 3.3664 0.1660 -0.2399 0.0738 0.2058 0.1703 0.0091 -0.0070 -0.0445 -0.1939 'X-RAY DIFFRACTION' 4 ? refined 11.0650 35.4210 4.6250 0.5362 0.3310 0.5586 0.0119 -0.1413 -0.0617 1.2320 35.7440 14.1099 6.5511 4.3569 21.8980 0.2175 0.1402 -0.3577 0.2987 -0.0426 -0.5444 0.5628 1.1039 0.1158 'X-RAY DIFFRACTION' 5 ? refined 17.6490 37.7100 15.3140 0.2533 0.2809 0.3876 0.0081 -0.0250 0.0303 5.8037 7.5327 1.7251 4.5247 0.4037 1.6267 0.1367 -0.1131 -0.0236 -0.4557 -0.2977 0.2883 0.2353 0.2629 -0.1772 'X-RAY DIFFRACTION' 6 ? refined 14.6080 50.3050 13.2290 0.1889 0.2222 0.3743 0.0060 -0.0199 -0.0535 6.9112 2.2508 1.9174 -0.6016 -0.6856 -0.3311 -0.0026 0.1044 -0.1018 -0.4946 0.5184 0.2442 0.1578 0.0437 -0.2427 'X-RAY DIFFRACTION' 7 ? refined 29.3930 44.8310 1.8030 0.1438 0.2267 0.3483 -0.0008 -0.0315 0.0136 4.5314 13.2068 2.9891 -5.7269 -3.1334 2.1544 0.0619 0.2796 -0.3415 0.1151 0.2954 -0.0729 -0.1025 -0.2255 -0.1701 'X-RAY DIFFRACTION' 8 ? refined 34.0060 26.1050 -3.5750 0.1844 0.2371 0.3424 -0.0252 0.0516 0.0104 4.0587 12.7945 4.9889 -4.9662 0.0068 0.6850 -0.2823 -0.0439 0.3263 -0.0577 -0.2122 0.2058 -0.3565 0.0996 0.2044 'X-RAY DIFFRACTION' 9 ? refined 7.6170 -13.8130 -7.2880 0.2643 0.4231 0.5217 0.0342 0.0532 -0.0741 2.0911 13.2067 6.8057 0.6914 1.9631 -1.8261 0.2710 -0.3918 0.1209 0.3990 -0.4427 -0.7448 -0.4170 0.3944 0.0669 'X-RAY DIFFRACTION' 10 ? refined 6.2570 7.5980 -3.3000 0.2355 0.2945 0.4572 -0.0102 0.0274 0.0536 0.3422 3.8995 4.4303 -0.4963 0.1960 1.0287 0.0653 -0.0095 -0.0558 -0.0378 -0.1671 0.0604 -0.2488 0.5202 -0.1097 'X-RAY DIFFRACTION' 11 ? refined 17.5990 18.0870 -5.2420 0.2612 0.2386 0.4174 -0.0707 -0.0044 0.0498 16.5032 4.2742 2.0644 -1.0657 5.0590 -3.0699 0.0822 -0.0501 -0.0321 -0.2187 0.2473 0.2230 0.0997 0.0046 0.0697 'X-RAY DIFFRACTION' 12 ? refined 16.7290 7.6320 -2.1380 0.3473 0.3248 0.5060 0.0633 0.0270 0.0307 4.3692 18.4447 14.0589 1.8314 1.2901 -14.6387 -0.4525 0.6352 -0.1827 -0.1029 -0.2141 0.3807 0.1042 0.0728 -0.3227 'X-RAY DIFFRACTION' 13 ? refined 9.1910 10.6580 -12.5210 0.8056 1.2325 0.7638 -0.1271 0.1150 -0.2476 -0.4399 25.4875 -3.1369 -7.8900 -4.2984 11.2057 0.0050 -0.0774 0.0725 0.3477 0.0940 -0.5353 0.0766 0.3308 0.0643 'X-RAY DIFFRACTION' 14 ? refined 13.2690 22.4560 -10.8550 0.2427 0.1710 0.3525 0.0031 -0.0134 0.0566 5.3704 3.3868 4.7202 0.1662 -1.3230 -0.7696 0.1260 0.0122 -0.1382 0.1509 -0.0313 0.0292 -0.0589 0.2291 -0.0581 'X-RAY DIFFRACTION' 15 ? refined -1.4490 16.8640 0.7430 0.1504 0.3519 0.5674 0.0546 0.0963 0.1095 0.2006 7.5419 4.1797 0.8323 0.9918 -0.1224 0.0179 0.0375 -0.0554 0.1722 0.1107 0.3237 0.2777 -0.4100 0.3855 'X-RAY DIFFRACTION' 16 ? refined -6.4920 -2.7940 6.3930 0.1785 0.2734 0.3915 -0.0363 0.0290 0.0050 2.5774 13.9701 1.1285 -2.6971 0.2541 0.8101 -0.0407 0.0478 -0.0071 0.1980 -0.1032 0.3246 0.4963 0.1802 -0.2183 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 12 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 13 A 28 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 29 A 34 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 35 A 45 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 46 A 59 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 60 A 83 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 84 A 95 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 A 96 A 111 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 B 0 B 12 ? . . . . ? 'X-RAY DIFFRACTION' 10 10 B 13 B 28 ? . . . . ? 'X-RAY DIFFRACTION' 11 11 B 29 B 34 ? . . . . ? 'X-RAY DIFFRACTION' 12 12 B 35 B 45 ? . . . . ? 'X-RAY DIFFRACTION' 13 13 B 46 B 59 ? . . . . ? 'X-RAY DIFFRACTION' 14 14 B 60 B 83 ? . . . . ? 'X-RAY DIFFRACTION' 15 15 B 84 B 95 ? . . . . ? 'X-RAY DIFFRACTION' 16 16 B 96 B 111 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC5 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 4 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 6 HKL-3000 . ? ? ? ? phasing ? ? ? 7 MLPHARE . ? ? ? ? phasing ? ? ? 8 DM . ? ? ? ? phasing ? ? ? 9 SHELXDE . ? ? ? ? phasing ? ? ? 10 RESOLVE . ? ? ? ? phasing ? ? ? 11 ARP/wARP . ? ? ? ? phasing ? ? ? 12 Coot . ? ? ? ? phasing ? ? ? 13 REFMAC 5.5.0109 ? ? ? ? refinement ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLY 17 ? ? O A HOH 163 ? ? 2.03 2 1 O A ARG 15 ? ? OG1 A THR 18 ? ? 2.15 3 1 O A ARG 28 ? ? O A HOH 167 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OH A TYR 79 ? ? 1_555 OD2 B ASP 102 ? ? 6_565 2.13 2 1 NH2 A ARG 57 ? ? 1_555 OD2 B ASP 5 ? ? 3_555 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A 1 ? ? -152.02 -26.51 2 1 SER A 74 ? ? -71.52 -73.73 3 1 GLU A 109 ? ? -94.90 41.58 4 1 ASN B 71 ? ? -63.35 -72.88 5 1 GLU B 109 ? ? -107.02 69.49 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 3 ? CG ? A TYR 6 CG 2 1 Y 1 A TYR 3 ? CD1 ? A TYR 6 CD1 3 1 Y 1 A TYR 3 ? CD2 ? A TYR 6 CD2 4 1 Y 1 A TYR 3 ? CE1 ? A TYR 6 CE1 5 1 Y 1 A TYR 3 ? CE2 ? A TYR 6 CE2 6 1 Y 1 A TYR 3 ? CZ ? A TYR 6 CZ 7 1 Y 1 A TYR 3 ? OH ? A TYR 6 OH 8 1 Y 1 A ASN 111 ? CG ? A ASN 114 CG 9 1 Y 1 A ASN 111 ? OD1 ? A ASN 114 OD1 10 1 Y 1 A ASN 111 ? ND2 ? A ASN 114 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A GLY 112 ? A GLY 115 4 1 Y 1 A GLU 113 ? A GLU 116 5 1 Y 1 A ASP 114 ? A ASP 117 6 1 Y 1 A ARG 115 ? A ARG 118 7 1 Y 1 A GLU 116 ? A GLU 119 8 1 Y 1 A HIS 117 ? A HIS 120 9 1 Y 1 A ALA 118 ? A ALA 121 10 1 Y 1 A GLU 119 ? A GLU 122 11 1 Y 1 A ARG 120 ? A ARG 123 12 1 Y 1 B SER -2 ? B SER 1 13 1 Y 1 B ASN -1 ? B ASN 2 14 1 Y 1 B GLU 48 ? B GLU 51 15 1 Y 1 B ALA 49 ? B ALA 52 16 1 Y 1 B SER 74 ? B SER 77 17 1 Y 1 B GLY 112 ? B GLY 115 18 1 Y 1 B GLU 113 ? B GLU 116 19 1 Y 1 B ASP 114 ? B ASP 117 20 1 Y 1 B ARG 115 ? B ARG 118 21 1 Y 1 B GLU 116 ? B GLU 119 22 1 Y 1 B HIS 117 ? B HIS 120 23 1 Y 1 B ALA 118 ? B ALA 121 24 1 Y 1 B GLU 119 ? B GLU 122 25 1 Y 1 B ARG 120 ? B ARG 123 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.fraction _pdbx_reflns_twin.operator _pdbx_reflns_twin.type _pdbx_reflns_twin.mean_F_square_over_mean_F2 _pdbx_reflns_twin.mean_I2_over_mean_I_square 1 1 1 0.590 'H, K, L' ? ? ? 2 1 1 0.410 'K, H, -L' ? ? ? #