HEADER HYDROLASE/HYDROLASE INHIBITOR 13-APR-11 3RIL TITLE THE ACID BETA-GLUCOSIDASE ACTIVE SITE EXHIBITS PLASTICITY IN BINDING TITLE 2 3,4,5,6-TETRAHYDROXYAZEPANE-BASED INHIBITORS: IMPLICATIONS FOR TITLE 3 PHARMACOLOGICAL CHAPERONE DESIGN FOR GAUCHER DISEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYLCERAMIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ACID BETA-GLUCOSIDASE, ALGLUCERASE, BETA-GLUCOCEREBROSIDASE, COMPND 5 D-GLUCOSYL-N-ACYLSPHINGOSINE GLUCOHYDROLASE, IMIGLUCERASE; COMPND 6 EC: 3.2.1.45; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GBA, GC, GLUC; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS TIM-BARREL, LYSOSOMAL HYDROLASE, HYDROLASE, GLYCOSYLATION, LYSOSOME, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.D.ORWIG,R.L.LIEBERMAN REVDAT 4 29-JUL-20 3RIL 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 SSBOND LINK SITE REVDAT 3 15-AUG-18 3RIL 1 REMARK REVDAT 2 05-DEC-12 3RIL 1 LINK REMARK REVDAT 1 14-MAR-12 3RIL 0 JRNL AUTH S.D.ORWIG,Y.L.TAN,N.P.GRIMSTER,Z.YU,E.T.POWERS,J.W.KELLY, JRNL AUTH 2 R.L.LIEBERMAN JRNL TITL BINDING OF 3,4,5,6-TETRAHYDROXYAZEPANES TO THE JRNL TITL 2 ACID-BETA-GLUCOSIDASE ACTIVE SITE: IMPLICATIONS FOR JRNL TITL 3 PHARMACOLOGICAL CHAPERONE DESIGN FOR GAUCHER DISEASE JRNL REF BIOCHEMISTRY V. 50 10647 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 22047104 JRNL DOI 10.1021/BI201619Z REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 100647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 290 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 15700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 280 REMARK 3 SOLVENT ATOMS : 1184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.309 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.950 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 16434 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 22432 ; 1.805 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1980 ; 7.141 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 720 ;36.125 ;23.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2512 ;16.378 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 84 ;21.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2460 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12504 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 9920 ; 0.215 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 16038 ; 0.398 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6514 ; 0.375 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6398 ; 0.665 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3RIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT REMARK 200 SOFTWARE USED: REFMAC 5.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-12% PEG 3350, 0.18-0.205 M AMMONIUM REMARK 280 SULFATE, AND 0.1 M ACETATE BUFFER, PH 4.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.71250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -215.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -213.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 317 REMARK 465 LEU C 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 168 O HOH B 824 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 784 O HOH C 610 2656 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 60 CG HIS A 60 CD2 0.060 REMARK 500 TRP A 291 CE2 TRP A 291 CD2 0.081 REMARK 500 TRP A 312 CE2 TRP A 312 CD2 0.082 REMARK 500 HIS A 374 CG HIS A 374 CD2 0.055 REMARK 500 TRP A 378 CE2 TRP A 378 CD2 0.103 REMARK 500 HIS A 419 CG HIS A 419 CD2 0.061 REMARK 500 HIS A 451 CG HIS A 451 CD2 0.066 REMARK 500 HIS A 490 CG HIS A 490 CD2 0.061 REMARK 500 HIS B 145 CG HIS B 145 CD2 0.064 REMARK 500 HIS B 273 CG HIS B 273 CD2 0.068 REMARK 500 HIS B 274 CG HIS B 274 CD2 0.055 REMARK 500 TRP B 291 CE2 TRP B 291 CD2 0.084 REMARK 500 TRP B 378 CE2 TRP B 378 CD2 0.088 REMARK 500 TRP B 393 CE2 TRP B 393 CD2 0.081 REMARK 500 HIS C 145 CG HIS C 145 CD2 0.054 REMARK 500 HIS C 255 CG HIS C 255 CD2 0.063 REMARK 500 HIS C 274 CG HIS C 274 CD2 0.059 REMARK 500 HIS C 290 CG HIS C 290 CD2 0.061 REMARK 500 TRP C 291 CE2 TRP C 291 CD2 0.081 REMARK 500 TRP C 378 CE2 TRP C 378 CD2 0.088 REMARK 500 HIS C 419 CG HIS C 419 CD2 0.064 REMARK 500 HIS C 451 CG HIS C 451 CD2 0.054 REMARK 500 HIS C 490 CG HIS C 490 CD2 0.060 REMARK 500 HIS D 145 CG HIS D 145 CD2 0.061 REMARK 500 HIS D 273 CG HIS D 273 CD2 0.063 REMARK 500 HIS D 290 CG HIS D 290 CD2 0.060 REMARK 500 TRP D 291 CE2 TRP D 291 CD2 0.080 REMARK 500 HIS D 311 CG HIS D 311 CD2 0.060 REMARK 500 TRP D 312 CE2 TRP D 312 CD2 0.085 REMARK 500 TRP D 357 CE2 TRP D 357 CD2 0.072 REMARK 500 TRP D 378 CE2 TRP D 378 CD2 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 406 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG A 433 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU A 480 CA - CB - CG ANGL. DEV. = 19.9 DEGREES REMARK 500 LEU B 314 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 LEU B 480 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG C 39 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU C 314 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ILE C 406 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG C 433 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU C 480 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 TRP D 312 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU D 314 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 ARG D 353 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU D 480 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 75 -138.26 -116.03 REMARK 500 ALA A 124 -145.54 70.93 REMARK 500 TYR A 133 149.59 -176.90 REMARK 500 ASP A 141 61.65 -104.88 REMARK 500 LEU A 156 -71.47 -103.97 REMARK 500 ASN A 192 -165.21 -123.80 REMARK 500 GLU A 233 138.12 167.13 REMARK 500 ASP A 263 -63.89 -121.04 REMARK 500 LEU A 281 -85.37 71.67 REMARK 500 TYR A 313 -79.73 -132.08 REMARK 500 THR A 323 -74.07 -106.42 REMARK 500 GLN A 350 77.01 72.73 REMARK 500 TRP A 381 -138.10 -88.61 REMARK 500 VAL A 394 -62.25 -106.81 REMARK 500 ARG A 395 137.43 -176.07 REMARK 500 MET B 49 45.94 38.79 REMARK 500 THR B 63 -79.63 171.13 REMARK 500 PHE B 75 -141.96 -118.68 REMARK 500 ALA B 124 -154.58 76.56 REMARK 500 GLU B 233 134.05 159.53 REMARK 500 ASP B 263 -61.91 -122.61 REMARK 500 LEU B 281 -80.81 67.88 REMARK 500 TYR B 313 91.14 -25.40 REMARK 500 LEU B 314 89.44 46.30 REMARK 500 ASP B 315 -72.88 92.27 REMARK 500 LEU B 317 40.98 -105.69 REMARK 500 ALA B 318 86.22 -168.16 REMARK 500 THR B 323 -78.66 -120.09 REMARK 500 SER B 345 107.93 70.28 REMARK 500 HIS B 374 -6.05 85.84 REMARK 500 TRP B 381 -135.13 -82.59 REMARK 500 ASP B 409 52.68 37.52 REMARK 500 ASN C 19 -159.35 -157.09 REMARK 500 ALA C 33 151.13 -47.60 REMARK 500 PHE C 75 -140.58 -122.34 REMARK 500 ASN C 117 18.16 -141.54 REMARK 500 ALA C 124 -149.62 76.05 REMARK 500 TYR C 133 146.99 174.96 REMARK 500 ASP C 141 68.15 -103.38 REMARK 500 LEU C 156 -71.74 -106.21 REMARK 500 ASN C 192 -158.34 -125.66 REMARK 500 GLU C 233 140.10 178.66 REMARK 500 LEU C 281 -86.25 71.90 REMARK 500 TYR C 313 -165.05 19.46 REMARK 500 THR C 323 -78.20 -109.97 REMARK 500 SER C 345 92.38 139.41 REMARK 500 HIS C 374 -0.48 76.99 REMARK 500 TRP C 381 -136.65 -86.37 REMARK 500 ARG C 395 129.61 -179.60 REMARK 500 ASP C 409 46.24 38.11 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 349 GLN A 350 45.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 883 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 844 DISTANCE = 6.72 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RIK RELATED DB: PDB DBREF 3RIL A 1 497 UNP P04062 GLCM_HUMAN 40 536 DBREF 3RIL B 1 497 UNP P04062 GLCM_HUMAN 40 536 DBREF 3RIL C 1 497 UNP P04062 GLCM_HUMAN 40 536 DBREF 3RIL D 1 497 UNP P04062 GLCM_HUMAN 40 536 SEQADV 3RIL HIS A 495 UNP P04062 ARG 534 VARIANT SEQADV 3RIL HIS B 495 UNP P04062 ARG 534 VARIANT SEQADV 3RIL HIS C 495 UNP P04062 ARG 534 VARIANT SEQADV 3RIL HIS D 495 UNP P04062 ARG 534 VARIANT SEQRES 1 A 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 A 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 A 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 A 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 A 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 A 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 A 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 A 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 A 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 A 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 A 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 A 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 A 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 A 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 A 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 A 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 A 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 A 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 A 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 A 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 A 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 A 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 A 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 A 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 A 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 A 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 A 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 A 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 A 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 A 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 A 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 A 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 A 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 A 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 A 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 A 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 A 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 A 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 A 497 HIS ARG GLN SEQRES 1 B 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 B 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 B 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 B 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 B 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 B 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 B 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 B 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 B 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 B 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 B 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 B 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 B 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 B 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 B 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 B 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 B 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 B 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 B 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 B 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 B 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 B 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 B 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 B 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 B 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 B 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 B 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 B 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 B 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 B 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 B 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 B 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 B 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 B 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 B 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 B 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 B 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 B 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 B 497 HIS ARG GLN SEQRES 1 C 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 C 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 C 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 C 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 C 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 C 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 C 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 C 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 C 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 C 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 C 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 C 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 C 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 C 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 C 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 C 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 C 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 C 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 C 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 C 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 C 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 C 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 C 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 C 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 C 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 C 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 C 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 C 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 C 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 C 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 C 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 C 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 C 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 C 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 C 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 C 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 C 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 C 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 C 497 HIS ARG GLN SEQRES 1 D 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 D 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 D 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 D 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 D 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 D 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 D 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 D 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 D 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 D 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 D 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 D 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 D 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 D 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 D 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 D 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 D 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 D 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 D 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 D 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 D 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 D 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 D 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 D 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 D 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 D 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 D 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 D 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 D 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 D 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 D 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 D 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 D 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 D 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 D 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 D 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 D 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 D 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 D 497 HIS ARG GLN MODRES 3RIL ASN A 19 ASN GLYCOSYLATION SITE MODRES 3RIL ASN C 19 ASN GLYCOSYLATION SITE MODRES 3RIL ASN B 19 ASN GLYCOSYLATION SITE MODRES 3RIL ASN D 19 ASN GLYCOSYLATION SITE HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 A 510 5 HET SO4 A 511 5 HET NAG A 512 14 HET 3RK A 513 11 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET SO4 B 505 5 HET SO4 B 506 5 HET SO4 B 507 5 HET NAG B 508 14 HET 3RK B 509 11 HET SO4 C 501 5 HET SO4 C 502 5 HET SO4 C 503 5 HET SO4 C 504 5 HET SO4 C 505 5 HET SO4 C 506 5 HET SO4 C 507 5 HET SO4 C 508 5 HET SO4 C 509 5 HET SO4 C 510 5 HET SO4 C 511 5 HET NAG C 512 14 HET 3RK C 513 11 HET SO4 D 501 5 HET SO4 D 502 5 HET SO4 D 503 5 HET SO4 D 504 5 HET SO4 D 505 5 HET SO4 D 506 5 HET SO4 D 507 5 HET NAG D 508 14 HET 3RK D 509 11 HETNAM SO4 SULFATE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 3RK (3S,4R,5R,6S)-AZEPANE-3,4,5,6-TETROL FORMUL 5 SO4 36(O4 S 2-) FORMUL 16 NAG 4(C8 H15 N O6) FORMUL 17 3RK 4(C6 H13 N O4) FORMUL 49 HOH *1184(H2 O) HELIX 1 1 THR A 86 ALA A 95 1 10 HELIX 2 2 SER A 97 SER A 110 1 14 HELIX 3 3 PRO A 150 LYS A 155 1 6 HELIX 4 4 LEU A 156 ALA A 168 1 13 HELIX 5 5 PRO A 182 LYS A 186 5 5 HELIX 6 6 ASP A 203 HIS A 223 1 21 HELIX 7 7 GLU A 235 LEU A 241 5 7 HELIX 8 8 THR A 252 ASP A 263 1 12 HELIX 9 9 ASP A 263 ASN A 270 1 8 HELIX 10 10 LEU A 286 LEU A 288 5 3 HELIX 11 11 PRO A 289 THR A 297 1 9 HELIX 12 12 ASP A 298 LYS A 303 1 6 HELIX 13 13 PRO A 319 PHE A 331 1 13 HELIX 14 14 SER A 356 TYR A 373 1 18 HELIX 15 15 ILE A 406 ASP A 409 5 4 HELIX 16 16 GLN A 414 LYS A 425 1 12 HELIX 17 17 THR B 86 LEU B 96 1 11 HELIX 18 18 SER B 97 SER B 110 1 14 HELIX 19 19 PRO B 150 LYS B 155 1 6 HELIX 20 20 LEU B 156 ALA B 168 1 13 HELIX 21 21 PRO B 182 LYS B 186 5 5 HELIX 22 22 ASP B 203 HIS B 223 1 21 HELIX 23 23 GLU B 235 LEU B 241 5 7 HELIX 24 24 THR B 252 ASP B 263 1 12 HELIX 25 25 ASP B 263 ASN B 270 1 8 HELIX 26 26 LEU B 286 LEU B 288 5 3 HELIX 27 27 PRO B 289 THR B 297 1 9 HELIX 28 28 ASP B 298 LYS B 303 1 6 HELIX 29 29 THR B 323 PHE B 331 1 9 HELIX 30 30 SER B 356 TYR B 373 1 18 HELIX 31 31 GLN B 414 LYS B 425 1 12 HELIX 32 32 THR C 86 ALA C 95 1 10 HELIX 33 33 SER C 97 SER C 110 1 14 HELIX 34 34 PRO C 150 LEU C 156 1 7 HELIX 35 35 LEU C 156 ALA C 168 1 13 HELIX 36 36 PRO C 182 LYS C 186 5 5 HELIX 37 37 ASP C 203 HIS C 223 1 21 HELIX 38 38 SER C 237 LEU C 241 5 5 HELIX 39 39 THR C 252 ASP C 263 1 12 HELIX 40 40 ASP C 263 ASN C 270 1 8 HELIX 41 41 LEU C 286 LEU C 288 5 3 HELIX 42 42 PRO C 289 THR C 297 1 9 HELIX 43 43 ASP C 298 LYS C 303 1 6 HELIX 44 44 PRO C 319 PHE C 331 1 13 HELIX 45 45 SER C 356 TYR C 373 1 18 HELIX 46 46 ILE C 406 ASP C 409 5 4 HELIX 47 47 GLN C 414 LYS C 425 1 12 HELIX 48 48 THR D 86 LEU D 96 1 11 HELIX 49 49 SER D 97 SER D 110 1 14 HELIX 50 50 PRO D 150 LYS D 155 1 6 HELIX 51 51 LEU D 156 ALA D 168 1 13 HELIX 52 52 PRO D 182 LYS D 186 5 5 HELIX 53 53 ASP D 203 HIS D 223 1 21 HELIX 54 54 GLU D 235 LEU D 241 5 7 HELIX 55 55 THR D 252 ASP D 263 1 12 HELIX 56 56 ASP D 263 ASN D 270 1 8 HELIX 57 57 LEU D 286 LEU D 288 5 3 HELIX 58 58 PRO D 289 THR D 297 1 9 HELIX 59 59 ASP D 298 LYS D 303 1 6 HELIX 60 60 THR D 323 PHE D 331 1 9 HELIX 61 61 SER D 356 TYR D 373 1 18 HELIX 62 62 ILE D 406 LYS D 408 5 3 HELIX 63 63 GLN D 414 LYS D 425 1 12 SHEET 1 A 4 PRO A 6 LYS A 7 0 SHEET 2 A 4 VAL A 15 CYS A 18 -1 O VAL A 15 N LYS A 7 SHEET 3 A 4 THR A 410 LYS A 413 -1 O PHE A 411 N CYS A 18 SHEET 4 A 4 ILE A 402 ASP A 405 -1 N ASP A 405 O THR A 410 SHEET 1 B 9 GLU A 50 PRO A 55 0 SHEET 2 B 9 THR A 36 THR A 43 -1 N ARG A 39 O SER A 52 SHEET 3 B 9 SER A 488 TRP A 494 -1 O LEU A 493 N SER A 38 SHEET 4 B 9 ALA A 456 ASN A 462 -1 N VAL A 458 O TYR A 492 SHEET 5 B 9 LEU A 444 MET A 450 -1 N ASP A 445 O LEU A 461 SHEET 6 B 9 GLN A 432 ALA A 438 -1 N GLN A 432 O MET A 450 SHEET 7 B 9 LEU A 65 LYS A 77 -1 N PHE A 75 O ARG A 433 SHEET 8 B 9 VAL A 468 ASP A 474 1 O LYS A 473 N LEU A 67 SHEET 9 B 9 GLY A 478 SER A 484 -1 O LEU A 480 N ILE A 472 SHEET 1 C 9 GLY A 80 ALA A 84 0 SHEET 2 C 9 ILE A 118 MET A 123 1 O ARG A 120 N GLY A 83 SHEET 3 C 9 SER A 173 PRO A 178 1 O LEU A 175 N VAL A 121 SHEET 4 C 9 ALA A 229 THR A 231 1 O THR A 231 N ALA A 176 SHEET 5 C 9 ARG A 277 GLN A 284 1 O LEU A 279 N VAL A 230 SHEET 6 C 9 GLY A 307 TRP A 312 1 O ALA A 309 N MET A 280 SHEET 7 C 9 MET A 335 ALA A 341 1 O MET A 335 N ILE A 308 SHEET 8 C 9 VAL A 375 ASN A 382 1 O VAL A 376 N LEU A 336 SHEET 9 C 9 GLY A 80 ALA A 84 1 N GLY A 82 O ASP A 380 SHEET 1 D 5 PRO B 6 LYS B 7 0 SHEET 2 D 5 VAL B 15 CYS B 18 -1 O VAL B 15 N LYS B 7 SHEET 3 D 5 THR B 410 LYS B 413 -1 O PHE B 411 N CYS B 18 SHEET 4 D 5 ILE B 402 ASP B 405 -1 N ASP B 405 O THR B 410 SHEET 5 D 5 ALA B 384 LEU B 385 1 N LEU B 385 O VAL B 404 SHEET 1 E 9 GLU B 50 PRO B 55 0 SHEET 2 E 9 THR B 36 THR B 43 -1 N ARG B 39 O SER B 52 SHEET 3 E 9 SER B 488 TRP B 494 -1 O LEU B 493 N SER B 38 SHEET 4 E 9 ALA B 456 ASN B 462 -1 N ASN B 462 O SER B 488 SHEET 5 E 9 LEU B 444 MET B 450 -1 N LEU B 449 O VAL B 457 SHEET 6 E 9 GLN B 432 ALA B 438 -1 N GLN B 432 O MET B 450 SHEET 7 E 9 LEU B 66 LYS B 77 -1 N THR B 68 O VAL B 437 SHEET 8 E 9 VAL B 468 ASP B 474 1 O LYS B 473 N LEU B 69 SHEET 9 E 9 GLY B 478 SER B 484 -1 O GLY B 478 N ASP B 474 SHEET 1 F 9 GLY B 80 ALA B 84 0 SHEET 2 F 9 ILE B 118 MET B 123 1 O ARG B 120 N GLY B 83 SHEET 3 F 9 SER B 173 PRO B 178 1 O LEU B 175 N VAL B 121 SHEET 4 F 9 ALA B 229 THR B 231 1 O THR B 231 N ALA B 176 SHEET 5 F 9 ARG B 277 GLN B 284 1 O ARG B 277 N VAL B 230 SHEET 6 F 9 GLY B 307 HIS B 311 1 O ALA B 309 N MET B 280 SHEET 7 F 9 MET B 335 GLU B 340 1 O MET B 335 N ILE B 308 SHEET 8 F 9 GLY B 377 ASN B 382 1 O GLY B 377 N ALA B 338 SHEET 9 F 9 GLY B 80 ALA B 84 1 N GLY B 82 O ASP B 380 SHEET 1 G 4 PRO C 6 LYS C 7 0 SHEET 2 G 4 VAL C 15 CYS C 18 -1 O VAL C 15 N LYS C 7 SHEET 3 G 4 THR C 410 LYS C 413 -1 O PHE C 411 N CYS C 18 SHEET 4 G 4 ILE C 402 ASP C 405 -1 N ASP C 405 O THR C 410 SHEET 1 H 9 GLU C 50 PRO C 55 0 SHEET 2 H 9 THR C 36 THR C 43 -1 N ARG C 39 O SER C 52 SHEET 3 H 9 SER C 488 TRP C 494 -1 O LEU C 493 N SER C 38 SHEET 4 H 9 ALA C 456 ASN C 462 -1 N VAL C 458 O TYR C 492 SHEET 5 H 9 LEU C 444 MET C 450 -1 N ASP C 445 O LEU C 461 SHEET 6 H 9 GLN C 432 ALA C 438 -1 N GLN C 432 O MET C 450 SHEET 7 H 9 LEU C 65 LYS C 77 -1 N GLN C 70 O GLY C 435 SHEET 8 H 9 VAL C 468 ASP C 474 1 O THR C 471 N LEU C 67 SHEET 9 H 9 GLY C 478 SER C 484 -1 O LEU C 480 N ILE C 472 SHEET 1 I 9 GLY C 80 ALA C 84 0 SHEET 2 I 9 ILE C 118 MET C 123 1 O ARG C 120 N GLY C 83 SHEET 3 I 9 SER C 173 PRO C 178 1 O LEU C 175 N VAL C 121 SHEET 4 I 9 PHE C 227 THR C 231 1 O THR C 231 N ALA C 176 SHEET 5 I 9 ARG C 277 GLN C 284 1 O ARG C 277 N VAL C 230 SHEET 6 I 9 GLY C 307 TRP C 312 1 O ALA C 309 N MET C 280 SHEET 7 I 9 MET C 335 ALA C 341 1 O MET C 335 N ILE C 308 SHEET 8 I 9 VAL C 375 ASN C 382 1 O VAL C 376 N LEU C 336 SHEET 9 I 9 GLY C 80 ALA C 84 1 N GLY C 82 O ASP C 380 SHEET 1 J 4 PRO D 6 LYS D 7 0 SHEET 2 J 4 VAL D 15 ASN D 19 -1 O VAL D 15 N LYS D 7 SHEET 3 J 4 THR D 410 LYS D 413 -1 O PHE D 411 N CYS D 18 SHEET 4 J 4 ILE D 402 ASP D 405 -1 N ASP D 405 O THR D 410 SHEET 1 K 9 GLU D 50 PRO D 55 0 SHEET 2 K 9 THR D 36 THR D 43 -1 N ARG D 39 O SER D 52 SHEET 3 K 9 SER D 488 TRP D 494 -1 O LEU D 493 N SER D 38 SHEET 4 K 9 ALA D 456 ASN D 462 -1 N ASN D 462 O SER D 488 SHEET 5 K 9 LEU D 444 MET D 450 -1 N LEU D 449 O VAL D 457 SHEET 6 K 9 GLN D 432 ALA D 438 -1 N GLN D 432 O MET D 450 SHEET 7 K 9 LEU D 65 LYS D 77 -1 N THR D 68 O VAL D 437 SHEET 8 K 9 VAL D 468 ASP D 474 1 O LYS D 473 N LEU D 69 SHEET 9 K 9 GLY D 478 SER D 484 -1 O GLY D 478 N ASP D 474 SHEET 1 L 9 GLY D 80 ALA D 84 0 SHEET 2 L 9 ILE D 118 MET D 123 1 O ARG D 120 N GLY D 83 SHEET 3 L 9 SER D 173 PRO D 178 1 O LEU D 175 N VAL D 121 SHEET 4 L 9 ALA D 229 THR D 231 1 O ALA D 229 N ALA D 176 SHEET 5 L 9 ARG D 277 GLN D 284 1 O ARG D 277 N VAL D 230 SHEET 6 L 9 GLY D 307 HIS D 311 1 O ALA D 309 N MET D 280 SHEET 7 L 9 MET D 335 GLU D 340 1 O MET D 335 N ILE D 308 SHEET 8 L 9 GLY D 377 ASN D 382 1 O GLY D 377 N ALA D 338 SHEET 9 L 9 GLY D 80 ALA D 84 1 N GLY D 82 O ASP D 380 SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.09 SSBOND 2 CYS A 18 CYS A 23 1555 1555 2.11 SSBOND 3 CYS B 4 CYS B 16 1555 1555 2.11 SSBOND 4 CYS B 18 CYS B 23 1555 1555 2.13 SSBOND 5 CYS C 4 CYS C 16 1555 1555 2.09 SSBOND 6 CYS C 18 CYS C 23 1555 1555 2.15 SSBOND 7 CYS D 4 CYS D 16 1555 1555 2.10 SSBOND 8 CYS D 18 CYS D 23 1555 1555 2.15 LINK ND2 ASN A 19 C1 NAG A 512 1555 1555 1.50 LINK ND2 ASN B 19 C1 NAG B 508 1555 1555 1.78 LINK ND2 ASN C 19 C1 NAG C 512 1555 1555 1.53 LINK ND2 ASN D 19 C1 NAG D 508 1555 1555 1.98 CISPEP 1 LEU A 288 PRO A 289 0 3.06 CISPEP 2 TYR A 313 LEU A 314 0 26.47 CISPEP 3 VAL A 343 GLY A 344 0 15.91 CISPEP 4 GLY A 390 PRO A 391 0 1.36 CISPEP 5 THR B 61 GLY B 62 0 -4.63 CISPEP 6 GLY B 62 THR B 63 0 18.42 CISPEP 7 LEU B 288 PRO B 289 0 4.07 CISPEP 8 LEU B 314 ASP B 315 0 -15.36 CISPEP 9 VAL B 343 GLY B 344 0 -6.00 CISPEP 10 GLY B 344 SER B 345 0 18.42 CISPEP 11 SER B 345 LYS B 346 0 -8.70 CISPEP 12 GLY B 390 PRO B 391 0 10.57 CISPEP 13 LEU C 288 PRO C 289 0 2.08 CISPEP 14 TRP C 312 TYR C 313 0 -20.57 CISPEP 15 TYR C 313 LEU C 314 0 -24.81 CISPEP 16 ALA C 318 PRO C 319 0 -24.84 CISPEP 17 VAL C 343 GLY C 344 0 -6.01 CISPEP 18 GLY C 344 SER C 345 0 -11.33 CISPEP 19 GLY C 390 PRO C 391 0 0.55 CISPEP 20 PHE D 31 PRO D 32 0 -14.52 CISPEP 21 THR D 61 GLY D 62 0 -6.98 CISPEP 22 PRO D 71 GLU D 72 0 15.22 CISPEP 23 LEU D 288 PRO D 289 0 0.53 CISPEP 24 LEU D 314 ASP D 315 0 -14.02 CISPEP 25 VAL D 343 GLY D 344 0 1.94 CISPEP 26 GLY D 344 SER D 345 0 0.78 CISPEP 27 GLY D 390 PRO D 391 0 4.74 CRYST1 109.217 91.425 152.659 90.00 110.95 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009156 0.000000 0.003506 0.00000 SCALE2 0.000000 0.010938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007014 0.00000