HEADER STRUCTURAL PROTEIN 14-APR-11 3RIP TITLE CRYSTAL STRUCTURE OF HUMAN GAMMA-TUBULIN COMPLEX PROTEIN 4 (GCP4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-TUBULIN COMPLEX COMPONENT 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GCP-4, HGCP4, GAMMA-RING COMPLEX PROTEIN 76 KDA, H76P, COMPND 5 HGRIP76; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TUBGCP4, 76P, GCP4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B (+) KEYWDS HELIX BUNDLES, GAMMA-TUBULIN RING COMPLEX, GAMMA-TURC, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.GREGORY-PAURON,V.GUILLET,L.MOUREY REVDAT 3 03-APR-24 3RIP 1 REMARK SEQADV REVDAT 2 03-JUL-13 3RIP 1 JRNL VERSN REVDAT 1 06-JUL-11 3RIP 0 JRNL AUTH V.GUILLET,M.KNIBIEHLER,L.GREGORY-PAURON,M.H.REMY,C.CHEMIN, JRNL AUTH 2 B.RAYNAUD-MESSINA,C.BON,J.M.KOLLMAN,D.A.AGARD,A.MERDES, JRNL AUTH 3 L.MOUREY JRNL TITL CRYSTAL STRUCTURE OF GAMMA-TUBULIN COMPLEX PROTEIN GCP4 JRNL TITL 2 PROVIDES INSIGHT INTO MICROTUBULE NUCLEATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 915 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21725292 JRNL DOI 10.1038/NSMB.2083 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 73248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5329 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 259 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92000 REMARK 3 B22 (A**2) : 1.92000 REMARK 3 B33 (A**2) : -2.88000 REMARK 3 B12 (A**2) : 0.96000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4726 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6396 ; 2.105 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 568 ; 6.252 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;36.004 ;24.266 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 802 ;19.268 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.073 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 725 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3503 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1524 ; 1.784 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2452 ; 2.645 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 958 ; 3.148 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 914 ; 5.046 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: THE STARTING MODEL WAS SOLVED AND PARTIALLY REMARK 200 REFINED FROM SAD DATA COLLECTED USING THE SELENEMETHIONINE REMARK 200 PROTEIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-10% MPD (2-METHYL-2,4-PENTANEDIOL), REMARK 280 0-20% GLYCEROL (W/V), 300-400 MM TRIS-HCL, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.33000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.33000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.33000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.33000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.33000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 66 REMARK 465 GLN A 67 REMARK 465 GLN A 68 REMARK 465 GLN A 69 REMARK 465 ASP A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 PRO A 73 REMARK 465 SER A 74 REMARK 465 GLN A 75 REMARK 465 GLN A 76 REMARK 465 GLY A 77 REMARK 465 GLN A 78 REMARK 465 PRO A 209 REMARK 465 SER A 210 REMARK 465 SER A 211 REMARK 465 GLY A 212 REMARK 465 ASN A 213 REMARK 465 VAL A 214 REMARK 465 SER A 215 REMARK 465 ALA A 216 REMARK 465 GLN A 217 REMARK 465 PRO A 218 REMARK 465 GLU A 219 REMARK 465 GLU A 220 REMARK 465 ASP A 221 REMARK 465 GLU A 222 REMARK 465 GLU A 223 REMARK 465 ASP A 224 REMARK 465 LEU A 225 REMARK 465 GLY A 226 REMARK 465 ILE A 227 REMARK 465 GLY A 228 REMARK 465 GLY A 229 REMARK 465 LEU A 230 REMARK 465 THR A 231 REMARK 465 GLY A 232 REMARK 465 LYS A 233 REMARK 465 GLN A 234 REMARK 465 LEU A 235 REMARK 465 ARG A 236 REMARK 465 GLU A 237 REMARK 465 LEU A 238 REMARK 465 GLN A 239 REMARK 465 ASP A 240 REMARK 465 LEU A 241 REMARK 465 ARG A 242 REMARK 465 LEU A 243 REMARK 465 ILE A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 GLU A 247 REMARK 465 ASN A 248 REMARK 465 MET A 249 REMARK 465 LEU A 250 REMARK 465 ALA A 251 REMARK 465 PRO A 252 REMARK 465 GLN A 289 REMARK 465 ARG A 295 REMARK 465 LYS A 296 REMARK 465 GLY A 297 REMARK 465 LYS A 423 REMARK 465 GLU A 424 REMARK 465 HIS A 425 REMARK 465 LYS A 426 REMARK 465 ASP A 427 REMARK 465 ALA A 428 REMARK 465 THR A 429 REMARK 465 GLN A 430 REMARK 465 ALA A 431 REMARK 465 ARG A 432 REMARK 465 GLU A 433 REMARK 465 GLY A 434 REMARK 465 PRO A 435 REMARK 465 SER A 436 REMARK 465 ARG A 437 REMARK 465 GLU A 438 REMARK 465 THR A 439 REMARK 465 SER A 440 REMARK 465 PRO A 441 REMARK 465 ARG A 442 REMARK 465 GLU A 443 REMARK 465 ALA A 444 REMARK 465 PRO A 445 REMARK 465 GLY A 601 REMARK 465 PRO A 602 REMARK 465 THR A 655 REMARK 465 GLN A 656 REMARK 465 ALA A 657 REMARK 465 GLY A 658 REMARK 465 GLY A 659 REMARK 465 THR A 660 REMARK 465 LEU A 661 REMARK 465 GLY A 662 REMARK 465 SER A 663 REMARK 465 PHE A 664 REMARK 465 GLY A 665 REMARK 465 MET A 666 REMARK 465 CYS A 667 REMARK 465 GLY A 668 REMARK 465 ARG A 669 REMARK 465 LEU A 670 REMARK 465 GLU A 671 REMARK 465 HIS A 672 REMARK 465 HIS A 673 REMARK 465 HIS A 674 REMARK 465 HIS A 675 REMARK 465 HIS A 676 REMARK 465 HIS A 677 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 47 CD NE CZ NH1 NH2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 HIS A 65 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 144 CE NZ REMARK 470 LYS A 147 CE NZ REMARK 470 ARG A 169 CD NE CZ NH1 NH2 REMARK 470 LYS A 185 NZ REMARK 470 LYS A 255 CD CE NZ REMARK 470 GLN A 256 CG CD OE1 NE2 REMARK 470 ASN A 290 CG OD1 ND2 REMARK 470 VAL A 291 CG1 CG2 REMARK 470 ASN A 292 CG OD1 ND2 REMARK 470 LEU A 293 CG CD1 CD2 REMARK 470 THR A 294 OG1 CG2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 ASN A 409 CG OD1 ND2 REMARK 470 GLU A 419 CD OE1 OE2 REMARK 470 ARG A 551 CG CD REMARK 470 LEU A 600 CD1 CD2 REMARK 470 LEU A 603 CG CD1 CD2 REMARK 470 GLU A 605 CG CD OE1 OE2 REMARK 470 LYS A 616 CD CE NZ REMARK 470 TYR A 654 CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 554 O3 GOL A 685 2.15 REMARK 500 OE2 GLU A 281 O HOH A 834 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 367 CG GLU A 367 CD 0.886 REMARK 500 GLU A 367 CD GLU A 367 OE2 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 27 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PRO A 134 C - N - CA ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 260 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLU A 367 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 GLU A 367 CB - CG - CD ANGL. DEV. = -34.0 DEGREES REMARK 500 GLU A 367 OE1 - CD - OE2 ANGL. DEV. = -9.9 DEGREES REMARK 500 GLU A 367 CG - CD - OE1 ANGL. DEV. = 21.6 DEGREES REMARK 500 GLU A 367 CG - CD - OE1 ANGL. DEV. = -23.2 DEGREES REMARK 500 GLU A 367 CG - CD - OE2 ANGL. DEV. = 32.8 DEGREES REMARK 500 LEU A 413 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 633 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 633 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 22 -71.83 -43.34 REMARK 500 LEU A 165 92.79 106.09 REMARK 500 HIS A 193 14.64 -141.33 REMARK 500 ASP A 198 58.01 -149.15 REMARK 500 LYS A 255 116.97 78.08 REMARK 500 ASN A 292 -125.47 167.13 REMARK 500 LEU A 293 95.05 151.30 REMARK 500 LYS A 301 -160.89 102.42 REMARK 500 ASP A 406 -79.91 -75.92 REMARK 500 ASP A 407 87.59 -23.56 REMARK 500 HIS A 421 -84.79 86.56 REMARK 500 ASN A 507 -143.02 -136.97 REMARK 500 VAL A 535 -77.45 -115.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 678 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 679 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 680 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 681 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 682 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 683 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 684 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 685 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 686 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IN THE SEQRES RECORDS CORRESPONDS TO THE SEQUENCE OF REMARK 999 ISOFORM 2 OF THE UNP ENTRY GCP4_HUMAN. DBREF 3RIP A 1 666 UNP Q9UGJ1 GCP4_HUMAN 1 666 SEQADV 3RIP CYS A 667 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP GLY A 668 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP ARG A 669 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP LEU A 670 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP GLU A 671 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP HIS A 672 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP HIS A 673 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP HIS A 674 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP HIS A 675 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP HIS A 676 UNP Q9UGJ1 EXPRESSION TAG SEQADV 3RIP HIS A 677 UNP Q9UGJ1 EXPRESSION TAG SEQRES 1 A 677 MET ILE HIS GLU LEU LEU LEU ALA LEU SER GLY TYR PRO SEQRES 2 A 677 GLY SER ILE PHE THR TRP ASN LYS ARG SER GLY LEU GLN SEQRES 3 A 677 VAL SER GLN ASP PHE PRO PHE LEU HIS PRO SER GLU THR SEQRES 4 A 677 SER VAL LEU ASN ARG LEU CYS ARG LEU GLY THR ASP TYR SEQRES 5 A 677 ILE ARG PHE THR GLU PHE ILE GLU GLN TYR THR GLY HIS SEQRES 6 A 677 VAL GLN GLN GLN ASP HIS HIS PRO SER GLN GLN GLY GLN SEQRES 7 A 677 GLY GLY LEU HIS GLY ILE TYR LEU ARG ALA PHE CYS THR SEQRES 8 A 677 GLY LEU ASP SER VAL LEU GLN PRO TYR ARG GLN ALA LEU SEQRES 9 A 677 LEU ASP LEU GLU GLN GLU PHE LEU GLY ASP PRO HIS LEU SEQRES 10 A 677 SER ILE SER HIS VAL ASN TYR PHE LEU ASP GLN PHE GLN SEQRES 11 A 677 LEU LEU PHE PRO SER VAL MET VAL VAL VAL GLU GLN ILE SEQRES 12 A 677 LYS SER GLN LYS ILE HIS GLY CYS GLN ILE LEU GLU THR SEQRES 13 A 677 VAL TYR LYS HIS SER CYS GLY GLY LEU PRO PRO VAL ARG SEQRES 14 A 677 SER ALA LEU GLU LYS ILE LEU ALA VAL CYS HIS GLY VAL SEQRES 15 A 677 MET TYR LYS GLN LEU SER ALA TRP MET LEU HIS GLY LEU SEQRES 16 A 677 LEU LEU ASP GLN HIS GLU GLU PHE PHE ILE LYS GLN GLY SEQRES 17 A 677 PRO SER SER GLY ASN VAL SER ALA GLN PRO GLU GLU ASP SEQRES 18 A 677 GLU GLU ASP LEU GLY ILE GLY GLY LEU THR GLY LYS GLN SEQRES 19 A 677 LEU ARG GLU LEU GLN ASP LEU ARG LEU ILE GLU GLU GLU SEQRES 20 A 677 ASN MET LEU ALA PRO SER LEU LYS GLN PHE SER LEU ARG SEQRES 21 A 677 VAL GLU ILE LEU PRO SER TYR ILE PRO VAL ARG VAL ALA SEQRES 22 A 677 GLU LYS ILE LEU PHE VAL GLY GLU SER VAL GLN MET PHE SEQRES 23 A 677 GLU ASN GLN ASN VAL ASN LEU THR ARG LYS GLY SER ILE SEQRES 24 A 677 LEU LYS ASN GLN GLU ASP THR PHE ALA ALA GLU LEU HIS SEQRES 25 A 677 ARG LEU LYS GLN GLN PRO LEU PHE SER LEU VAL ASP PHE SEQRES 26 A 677 GLU GLN VAL VAL ASP ARG ILE ARG SER THR VAL ALA GLU SEQRES 27 A 677 HIS LEU TRP LYS LEU MET VAL GLU GLU SER ASP LEU LEU SEQRES 28 A 677 GLY GLN LEU LYS ILE ILE LYS ASP PHE TYR LEU LEU GLY SEQRES 29 A 677 ARG GLY GLU LEU PHE GLN ALA PHE ILE ASP THR ALA GLN SEQRES 30 A 677 HIS MET LEU LYS THR PRO PRO THR ALA VAL THR GLU HIS SEQRES 31 A 677 ASP VAL ASN VAL ALA PHE GLN GLN SER ALA HIS LYS VAL SEQRES 32 A 677 LEU LEU ASP ASP ASP ASN LEU LEU PRO LEU LEU HIS LEU SEQRES 33 A 677 THR ILE GLU TYR HIS GLY LYS GLU HIS LYS ASP ALA THR SEQRES 34 A 677 GLN ALA ARG GLU GLY PRO SER ARG GLU THR SER PRO ARG SEQRES 35 A 677 GLU ALA PRO ALA SER GLY TRP ALA ALA LEU GLY LEU SER SEQRES 36 A 677 TYR LYS VAL GLN TRP PRO LEU HIS ILE LEU PHE THR PRO SEQRES 37 A 677 ALA VAL LEU GLU LYS TYR ASN VAL VAL PHE LYS TYR LEU SEQRES 38 A 677 LEU SER VAL ARG ARG VAL GLN ALA GLU LEU GLN HIS CYS SEQRES 39 A 677 TRP ALA LEU GLN MET GLN ARG LYS HIS LEU LYS SER ASN SEQRES 40 A 677 GLN THR ASP ALA ILE LYS TRP ARG LEU ARG ASN HIS MET SEQRES 41 A 677 ALA PHE LEU VAL ASP ASN LEU GLN TYR TYR LEU GLN VAL SEQRES 42 A 677 ASP VAL LEU GLU SER GLN PHE SER GLN LEU LEU HIS GLN SEQRES 43 A 677 ILE ASN SER THR ARG ASP PHE GLU SER ILE ARG LEU ALA SEQRES 44 A 677 HIS ASP HIS PHE LEU SER ASN LEU LEU ALA GLN SER PHE SEQRES 45 A 677 ILE LEU LEU LYS PRO VAL PHE HIS CYS LEU ASN GLU ILE SEQRES 46 A 677 LEU ASP LEU CYS HIS SER PHE CYS SER LEU VAL SER GLN SEQRES 47 A 677 ASN LEU GLY PRO LEU ASP GLU ARG GLY ALA ALA GLN LEU SEQRES 48 A 677 SER ILE LEU VAL LYS GLY PHE SER ARG GLN SER SER LEU SEQRES 49 A 677 LEU PHE LYS ILE LEU SER SER VAL ARG ASN HIS GLN ILE SEQRES 50 A 677 ASN SER ASP LEU ALA GLN LEU LEU LEU ARG LEU ASP TYR SEQRES 51 A 677 ASN LYS TYR TYR THR GLN ALA GLY GLY THR LEU GLY SER SEQRES 52 A 677 PHE GLY MET CYS GLY ARG LEU GLU HIS HIS HIS HIS HIS SEQRES 53 A 677 HIS HET MRD A 678 8 HET GOL A 679 6 HET GOL A 680 6 HET GOL A 681 6 HET GOL A 682 6 HET GOL A 683 6 HET GOL A 684 6 HET GOL A 685 6 HET GOL A 686 6 HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MRD C6 H14 O2 FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *215(H2 O) HELIX 1 1 MET A 1 SER A 10 1 10 HELIX 2 2 HIS A 35 TYR A 62 1 28 HELIX 3 3 GLY A 83 LEU A 97 1 15 HELIX 4 4 LEU A 97 ASP A 114 1 18 HELIX 5 5 SER A 118 LEU A 126 1 9 HELIX 6 6 LEU A 126 LYS A 147 1 22 HELIX 7 7 GLY A 150 GLY A 163 1 14 HELIX 8 8 LEU A 165 GLY A 194 1 30 HELIX 9 9 VAL A 261 LEU A 264 5 4 HELIX 10 10 PRO A 269 MET A 285 1 17 HELIX 11 11 ASN A 302 GLN A 316 1 15 HELIX 12 12 SER A 321 SER A 348 1 28 HELIX 13 13 ASP A 349 TYR A 361 1 13 HELIX 14 14 ARG A 365 LYS A 381 1 17 HELIX 15 15 VAL A 387 VAL A 403 1 17 HELIX 16 16 LEU A 410 PRO A 412 5 3 HELIX 17 17 PRO A 461 LEU A 465 5 5 HELIX 18 18 THR A 467 MET A 499 1 33 HELIX 19 19 GLN A 500 LEU A 504 5 5 HELIX 20 20 ASN A 507 VAL A 535 1 29 HELIX 21 21 VAL A 535 SER A 549 1 15 HELIX 22 22 ASP A 552 LEU A 574 1 23 HELIX 23 23 LEU A 574 SER A 597 1 24 HELIX 24 24 ASP A 604 HIS A 635 1 32 HELIX 25 25 ASN A 638 TYR A 654 1 17 SHEET 1 A 2 THR A 18 ASN A 20 0 SHEET 2 A 2 GLY A 24 GLN A 26 -1 O GLY A 24 N ASN A 20 SHEET 1 B 2 ILE A 205 GLN A 207 0 SHEET 2 B 2 PHE A 257 LEU A 259 -1 O SER A 258 N LYS A 206 SHEET 1 C 2 LEU A 414 ILE A 418 0 SHEET 2 C 2 LEU A 452 TYR A 456 -1 O SER A 455 N HIS A 415 SSBOND 1 CYS A 494 CYS A 589 1555 1555 2.13 CISPEP 1 TRP A 460 PRO A 461 0 5.71 SITE 1 AC1 3 HIS A 590 CYS A 593 HOH A 869 SITE 1 AC2 2 LYS A 479 SER A 483 SITE 1 AC3 3 PRO A 13 TRP A 19 GLU A 57 SITE 1 AC4 3 GLN A 570 HIS A 635 GLN A 636 SITE 1 AC5 6 HIS A 3 GLU A 108 LYS A 502 ASN A 599 SITE 2 AC5 6 HOH A 811 HOH A 867 SITE 1 AC6 6 MET A 1 ILE A 2 ILE A 119 ASN A 526 SITE 2 AC6 6 TYR A 529 TYR A 530 SITE 1 AC7 1 ALA A 511 SITE 1 AC8 6 LYS A 275 PHE A 278 ARG A 333 GLU A 554 SITE 2 AC8 6 GOL A 686 HOH A 847 SITE 1 AC9 5 GLU A 274 LEU A 277 GLU A 281 ARG A 557 SITE 2 AC9 5 GOL A 685 CRYST1 214.950 214.950 128.660 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004652 0.002686 0.000000 0.00000 SCALE2 0.000000 0.005372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007772 0.00000