HEADER VIRAL PROTEIN 14-APR-11 3RIQ TITLE SIPHOVIRUS 9NA TAILSPIKE RECEPTOR BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAILSPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT, RECEPTOR BINDING DOMAIN, RESIDUES 131- COMPND 5 673; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIPHOVIRUS 9NA; SOURCE 3 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 4 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET 11D KEYWDS RIGHT HANDED BETA-HELIX, TAILSPIKE, ENDORHAMNOSIDASE, KEYWDS 2 LIPOPOLYSACCHARIDE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.ANDRES,Y.ROSKE,C.DOERING,U.HEINEMANN,R.SECKLER,S.BARBIRZ REVDAT 3 13-SEP-23 3RIQ 1 REMARK REVDAT 2 04-APR-12 3RIQ 1 JRNL REVDAT 1 29-FEB-12 3RIQ 0 JRNL AUTH D.ANDRES,Y.ROSKE,C.DOERING,U.HEINEMANN,R.SECKLER,S.BARBIRZ JRNL TITL TAIL MORPHOLOGY CONTROLS DNA RELEASE IN TWO SALMONELLA JRNL TITL 2 PHAGES WITH ONE LIPOPOLYSACCHARIDE RECEPTOR RECOGNITION JRNL TITL 3 SYSTEM. JRNL REF MOL.MICROBIOL. V. 83 1244 2012 JRNL REFN ISSN 0950-382X JRNL PMID 22364412 JRNL DOI 10.1111/J.1365-2958.2012.08006.X REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 83067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4372 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 320 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4154 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 701 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.332 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4317 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5884 ; 1.430 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 563 ; 6.618 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;37.184 ;24.874 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 700 ;11.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;12.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 662 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3322 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2712 ; 1.402 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4388 ; 2.154 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1605 ; 3.386 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1486 ; 4.818 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4317 ; 1.611 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87485 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 33.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : 0.75500 REMARK 200 R SYM FOR SHELL (I) : 0.68600 REMARK 200 FOR SHELL : 2.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 5000 MME, 0.1M BISTRIS PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.56600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.56600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.56600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.56600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 74.56600 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 74.56600 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 74.56600 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 74.56600 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 74.56600 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 74.56600 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 74.56600 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 74.56600 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.56600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 74.56600 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 74.56600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.56600 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 74.56600 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 74.56600 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 74.56600 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 74.56600 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 74.56600 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 74.56600 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 74.56600 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 74.56600 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 74.56600 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 74.56600 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 74.56600 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -74.56600 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 74.56600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 773 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 833 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 957 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 964 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 131 REMARK 465 VAL A 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 134 CD NE CZ NH1 NH2 REMARK 470 ASP A 267 CG OD1 OD2 REMARK 470 ASP A 654 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 977 O HOH A 1145 1.97 REMARK 500 O HOH A 21 O HOH A 1167 2.10 REMARK 500 NZ LYS A 336 O HOH A 990 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 796 O HOH A 862 7555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 480 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 480 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 162 -68.75 -124.70 REMARK 500 ASN A 285 60.49 63.73 REMARK 500 GLU A 318 -120.62 -112.60 REMARK 500 TYR A 344 -145.03 57.65 REMARK 500 GLU A 375 -117.27 -117.39 REMARK 500 GLU A 375 -117.20 -113.00 REMARK 500 ASN A 383 -139.48 62.84 REMARK 500 ASN A 399 69.51 68.18 REMARK 500 TYR A 407 -120.77 -104.48 REMARK 500 VAL A 412 59.88 -108.01 REMARK 500 ASP A 458 -160.90 -125.12 REMARK 500 ASN A 466 76.17 68.04 REMARK 500 LYS A 474 -147.48 -101.66 REMARK 500 ALA A 594 73.52 -106.64 REMARK 500 LEU A 622 18.72 59.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 DBREF 3RIQ A 131 673 PDB 3RIQ 3RIQ 131 673 SEQRES 1 A 543 ALA VAL PHE ARG SER GLU ALA ASP LYS LYS PHE LYS TYR SEQRES 2 A 543 SER VAL LYS LEU SER ASP TYR MET THR LEU GLN GLU ALA SEQRES 3 A 543 ALA THR ALA ALA VAL ASP SER LEU LEU ILE ASP ILE ASP SEQRES 4 A 543 TYR ASN PHE ILE ASP GLY GLU ALA VAL ASP PHE GLY GLY SEQRES 5 A 543 LYS VAL LEU THR ILE GLU CYS LYS ALA LYS PHE ILE GLY SEQRES 6 A 543 ASP GLY VAL LEU ASN TRP ASN ASN LEU GLY SER GLY SER SEQRES 7 A 543 LYS VAL ILE SER PRO HIS MET HIS THR LYS THR THR PRO SEQRES 8 A 543 TYR THR VAL TYR ARG PHE ASP ASP ASN GLY ASN TRP VAL SEQRES 9 A 543 THR ASN PRO THR THR VAL LEU ALA SER VAL ALA GLN ARG SEQRES 10 A 543 LEU ASP LYS GLY TYR LYS PRO ASN VAL ASN ASP HIS ASP SEQRES 11 A 543 ILE TRP ALA SER LEU PRO ASP ASN VAL LYS ASN GLN VAL SEQRES 12 A 543 ALA GLY ALA THR LEU ARG VAL ASN SER ALA ASN ASN ILE SEQRES 13 A 543 ILE PHE THR HIS PRO GLU ALA THR MET GLY GLY TYR LEU SEQRES 14 A 543 PHE THR LEU CYS ASN HIS ILE LEU VAL GLU SER PRO ARG SEQRES 15 A 543 ASN PHE ILE ALA TRP GLU SER GLY ILE THR PHE GLU ASN SEQRES 16 A 543 HIS HIS THR THR ALA TRP GLY THR GLY ASN LYS VAL VAL SEQRES 17 A 543 GLY GLY GLU ILE LYS TYR GLY SER GLY SER ALA VAL LEU SEQRES 18 A 543 PHE ILE ARG ASN ASP GLY GLY ASP ASP HIS ASP GLY GLY SEQRES 19 A 543 VAL ARG ASP LEU ILE SER TYR ARG VAL GLY GLU SER GLY SEQRES 20 A 543 VAL LYS THR TYR GLN ASN GLU ILE GLY GLY ARG SER ALA SEQRES 21 A 543 ARG ASN TYR ARG LEU VAL PHE ASP ASN ILE THR THR ILE SEQRES 22 A 543 GLN CYS TYR TYR ASP GLY ILE ASP VAL ASN ALA ASP THR SEQRES 23 A 543 GLY SER PRO THR GLU ARG VAL ASP ASP TYR THR LEU ALA SEQRES 24 A 543 GLU TYR PRO TRP PHE GLN LEU PRO THR GLN HIS ILE ILE SEQRES 25 A 543 ARG ASN ILE ILE THR ARG ASP CYS MET GLY ILE GLY ALA SEQRES 26 A 543 TRP TRP ASP GLY GLN LYS ASN ILE ILE ASP ASN VAL VAL SEQRES 27 A 543 THR TYR GLU ALA HIS LYS GLU GLY MET PHE ASP ARG GLY SEQRES 28 A 543 THR ASN ASN ASP ILE THR ASN ILE THR VAL VAL CYS ALA SEQRES 29 A 543 ASN LYS ASP LEU THR ASN LEU ASN GLN ILE VAL CYS GLU SEQRES 30 A 543 GLY GLY SER ARG LEU ARG GLY ILE MET VAL HIS ALA TYR SEQRES 31 A 543 THR THR GLN GLY TYR ALA VAL TYR ALA PRO SER SER GLU SEQRES 32 A 543 VAL SER ASN VAL SER CYS ALA GLY SER GLY THR LYS LYS SEQRES 33 A 543 ILE LEU CYS THR TYR VAL ALA ASP ILE GLN GLY GLY ASN SEQRES 34 A 543 ILE ASN VAL GLN HIS GLY GLU ASN ALA MET THR LEU SER SEQRES 35 A 543 MET ARG PRO ALA MET GLY GLY THR ILE ASN PRO SER LEU SEQRES 36 A 543 VAL LEU THR ALA ASP CYS GLN VAL ALA SER PRO GLY ASN SEQRES 37 A 543 GLU ALA SER ILE VAL LYS LEU SER ALA ILE GLN ASP GLY SEQRES 38 A 543 ALA ARG VAL GLY GLU LEU GLN LEU ASN ARG LEU GLY PHE SEQRES 39 A 543 LYS HIS MET SER ILE PRO VAL ALA GLU SER GLN LEU PRO SEQRES 40 A 543 GLU SER ALA LEU GLU PHE ASN SER SER ILE GLY PHE PHE SEQRES 41 A 543 PHE GLY THR ASP ASP GLU LEU ARG ILE LEU ALA LYS LYS SEQRES 42 A 543 PRO ASP GLY THR PHE VAL THR TYR SER LEU HET GOL A 1 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *701(H2 O) HELIX 1 1 SER A 135 PHE A 141 1 7 HELIX 2 2 SER A 148 TYR A 150 5 3 HELIX 3 3 THR A 152 ALA A 160 1 9 HELIX 4 4 ASN A 236 SER A 243 1 8 HELIX 5 5 ILE A 261 LEU A 265 5 5 HELIX 6 6 PRO A 266 ASN A 271 1 6 HELIX 7 7 ARG A 621 PHE A 624 5 4 HELIX 8 8 PRO A 637 LEU A 641 5 5 SHEET 1 A11 TYR A 170 ASN A 171 0 SHEET 2 A11 PHE A 193 GLY A 195 1 O ILE A 194 N TYR A 170 SHEET 3 A11 HIS A 214 THR A 217 1 O HIS A 216 N PHE A 193 SHEET 4 A11 GLU A 292 THR A 301 1 O THR A 294 N MET A 215 SHEET 5 A11 ALA A 276 ASN A 281 1 N LEU A 278 O LEU A 299 SHEET 6 A11 GLY A 197 ASN A 202 1 N TRP A 201 O ARG A 279 SHEET 7 A11 GLU A 176 ASP A 179 1 N VAL A 178 O ASN A 202 SHEET 8 A11 GLY A 197 ASN A 202 1 O ASN A 202 N VAL A 178 SHEET 9 A11 ALA A 276 ASN A 281 1 O ARG A 279 N TRP A 201 SHEET 10 A11 GLU A 292 THR A 301 1 O LEU A 299 N LEU A 278 SHEET 11 A11 PHE A 314 GLU A 324 1 O GLU A 324 N PHE A 300 SHEET 1 B 8 SER A 144 LYS A 146 0 SHEET 2 B 8 SER A 163 ILE A 166 1 O LEU A 165 N VAL A 145 SHEET 3 B 8 THR A 186 CYS A 189 1 O GLU A 188 N ILE A 166 SHEET 4 B 8 LYS A 209 ILE A 211 1 O ILE A 211 N ILE A 187 SHEET 5 B 8 ASN A 284 THR A 289 1 O ILE A 287 N VAL A 210 SHEET 6 B 8 ASN A 304 GLU A 309 1 O GLU A 309 N PHE A 288 SHEET 7 B 8 LYS A 336 VAL A 338 1 O LYS A 336 N ILE A 306 SHEET 8 B 8 GLY A 364 TYR A 371 1 O ARG A 366 N VAL A 337 SHEET 1 C 8 GLY A 364 TYR A 371 0 SHEET 2 C 8 VAL A 396 ILE A 403 1 O THR A 401 N SER A 370 SHEET 3 C 8 ILE A 441 ARG A 448 1 O ARG A 443 N PHE A 397 SHEET 4 C 8 ILE A 463 TYR A 470 1 O ILE A 463 N ILE A 442 SHEET 5 C 8 ASP A 485 VAL A 492 1 O ASP A 485 N ILE A 464 SHEET 6 C 8 ARG A 511 HIS A 518 1 O ARG A 511 N ILE A 486 SHEET 7 C 8 VAL A 527 CYS A 539 1 O GLU A 533 N LEU A 512 SHEET 8 C 8 ILE A 547 VAL A 552 1 O LEU A 548 N VAL A 527 SHEET 1 D10 GLY A 364 TYR A 371 0 SHEET 2 D10 GLU A 341 TYR A 344 1 N ILE A 342 O TYR A 371 SHEET 3 D10 PHE A 314 GLU A 324 1 N ALA A 316 O LYS A 343 SHEET 4 D10 VAL A 350 ILE A 353 1 O LEU A 351 N PHE A 323 SHEET 5 D10 LYS A 379 THR A 380 1 O LYS A 379 N VAL A 350 SHEET 6 D10 ASP A 411 VAL A 412 1 O ASP A 411 N THR A 380 SHEET 7 D10 TRP A 456 TRP A 457 1 O TRP A 456 N VAL A 412 SHEET 8 D10 MET A 477 ASP A 479 1 O PHE A 478 N TRP A 457 SHEET 9 D10 ILE A 504 CYS A 506 1 O VAL A 505 N ASP A 479 SHEET 10 D10 VAL A 527 CYS A 539 1 O TYR A 528 N ILE A 504 SHEET 1 E 2 TYR A 222 THR A 223 0 SHEET 2 E 2 ALA A 245 GLN A 246 -1 O ALA A 245 N THR A 223 SHEET 1 F 2 GLU A 384 ILE A 385 0 SHEET 2 F 2 ARG A 388 SER A 389 -1 O ARG A 388 N ILE A 385 SHEET 1 G 5 ALA A 568 MET A 573 0 SHEET 2 G 5 LEU A 585 VAL A 593 -1 O LEU A 587 N LEU A 571 SHEET 3 G 5 ALA A 600 GLN A 609 -1 O ILE A 602 N ASP A 590 SHEET 4 G 5 ALA A 612 LEU A 619 -1 O ALA A 612 N GLN A 609 SHEET 5 G 5 MET A 627 SER A 628 -1 O SER A 628 N GLN A 618 SHEET 1 H 3 SER A 646 PHE A 651 0 SHEET 2 H 3 LEU A 657 LYS A 662 -1 O LYS A 662 N SER A 646 SHEET 3 H 3 PHE A 668 SER A 672 -1 O VAL A 669 N ALA A 661 SITE 1 AC1 10 ASP A 174 GLY A 175 VAL A 198 ARG A 279 SITE 2 AC1 10 GLU A 324 HIS A 327 HOH A 774 HOH A 775 SITE 3 AC1 10 HOH A 865 HOH A1029 CRYST1 149.132 149.132 149.132 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006705 0.00000